Hippoglossus stenolepis (Pacific halibut): 118098915
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Entry
118098915 CDS
T08308
Name
(RefSeq) polycystic kidney disease 1 like 1
KO
K04987
polycystin 1L1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hsp03037
]
118098915
04040 Ion channels [BR:
hsp04040
]
118098915
Cilium and associated proteins [BR:
hsp03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
118098915
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
118098915
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
REJ
PKD
Polycystin_dom
PKD_channel
PKD_4
PLAT
GPS
ig
Ion_trans
Ig_3
Zn_ribbon_InsA
Motif
Other DBs
NCBI-GeneID:
118098915
NCBI-ProteinID:
XP_047193883
LinkDB
All DBs
Position
19:9963953..9994726
Genome browser
AA seq
2879 aa
AA seq
DB search
MYTRHVNVSSPADRVQTGRTFVVEVSGNLAGRPDQPTGIPSLAGPDLSLVSVEFLDMTAK
GQSSHHVSVLDDGSFSVSTHWILETPGKYEINVRVSNLLSTLSSTLQLFVLQPSPQISLL
HGPLGVPSCVHPQQPTSHSVTTQAAHVGDPVTLQANAVVLPAVSDLKVKVSTNHLRAGAS
VSLDVELFTTMKHLLVLDLTLTAEYERSHESDVDLSSEGHASKITDWKNSTDRDLLLSTA
LPQAFKVYEQICALRPSGSWMSAVQTHLEFSLEVVSQGRYNVTVEAFNPVSRASFQTHIL
VQDPVGELELSVPRAIRTNQKHVVLFSVAAGSNVTVSLLVNATLLYRNSSYATGEEAAAV
LLFHHAGTFPFELRATNQVSSQNKSVRVCVEENRKSSPQVTVDANWEPHTSQIPSLGDNV
RIYAEKPAYPTNTDITFVAVADAPEPVEFMWHFGDSVSVRTTSRAVTKRYNKPGRFDVFV
LMSAGQASVTSDLLPLVVQRAVKLNRLVHQASVLQNQTVTLSCRVNVGTDLTFHWSFGDG
SSRLGQSTEQHVFHRTGEFRVEVTASNLVSSSSLSSHIFVVDRPCQPPPVKNMGPPKLQV
RRYEVIRLGVTYETEIDCDTSGGLQYTWTLLDSAGRILRLPRTDTHRQSLTLQSHLLQYD
TYSATARVQVVGSVVYSNYSVRVQVMPSPPVVFIQGGTNVFINSGNATVLTLDGQRSYDP
DFPMNLLSYSWMCKPLSSISTSCFNQHISTSSPVLTVPAGFLKRDFDQFQFTLTVRSGER
SASAETFLTVKPNLIGKLSVSCPRCQGDQVNWDQSFSVDTWCEDCDVSLAHIQYTWSLFL
VDASSRPVIEVPFCSTMDLGAPSTIIEDQTAETSTLRPSDTSHDARTDLRTRKIGARRQY
LGLTDGEEPLYHSPGEFPPAEHHPSTDYPPLTLDSSRDQYSEQFGQSDIISEFPVHSDPS
AEWEFSFPVLEGGDMGDQAESVTESDYDVHSPHAEEGDPGSSAGRPTGVDGETFSPGEDA
VFDPAEHESEGSNLVVSRPSVLIQEPTLLDLPRDPVDGDIFESYTYTGISSSTLRVRPFS
LRPGSRYMLEVTAKCRNSFVGRTQLFLKSKPAPEGVKCQVQPVRGTELHTHFSIFCTSGK
EDLLYEYSFSVGGRPRRVLYQGRDFQYYFNLPAGDASDDYKATIYTEIRSSTYGTATKPC
PVSVRVQPSFLRDTSSHQDPDLELSAAGLRNLSALLQLGNSHEVRNYVSVLATVLNRLSL
DSEANAHAQRLIRNVLICTVCELKSGTAEQESMVDSICTLKDLLQVSNQVSLASVRHVTL
HIQTISDLFLESSAPVQHHLDHETLDTLLVLLSYILQAAVTDHDVTPETANKGNITQVLE
SDSVNTTATPRRCIPASSRDPIKQGGSISAEQRTRLVDDILQTASDLMLKYIFLHKVQEH
RVSTGLISLYAANQNQTSTVISSGSATFYLPPSLIQLLFIHGSGAAESTQRQPCVLSVLT
TLTLNPYTCACSPTQLTGPVVDLSLYKCSGRRKITVRSLNQPIDIELQHPPRNKSSVREY
VLLRSQVNYHSFNITRDHLQQVIQLSVAFTPPPDRVFPIMLLFRMCERPTPSMHHLHRTH
QWESNNIRITLPSSYLNAAGVGHLALLNAHFGKERRHKQLSEEISYSLTVVSSQCLTWDG
HQGAWTHLGCRTQQEDTTAAVNCSCHQLRPLTVVQHQIQTRHDTDDLDPFLSVSRDHTVL
VVMVLCLCLYIPGLVACKRADDVSEKNGRVHYLSDNSPLDPHLYAVTIHTGVCSAASLSA
KVYIKLYGEDGIPHTRELQVPGCTLFRRNSQDTFILSAADSLGSVWRVHIWHDGSGPSPN
WYLKHVEVSEVTSGHVKGCVWLFVGQCWLAVNKGDGQVERALCVCTHGIGFAKMLCFKLS
DFLADFHIWMSVYRCPYPNLFTHTQRLSVCLLLLLGYACVNTLIISQMDDQLPMELGILD
VSSVSVTTGLLSVVAVLPGTTIISSLFRLHEVKVTRSGVQHAKGRKTENDDFEGEGTNLL
PVSTAMLENKEPANQPDVRVRKDDDPAVESSAGLAIWNLSLISKGENDDRATLGKEIHLS
SESSKFCGTQKDVLSVCMREEDQDKKKKEDTQGNRFHVMGKLNRRKVGRASPWCQSLAWT
LCLLLSLSCLVLSAVLGMRFSSSKVLLWIHSLFFSLVSCIFFIQPVAILTVAVIVSCWYR
NRTDFHTFSTIKEFEIQQCSHSAANRPEEQFRPPDFPQDTSSYLDKLLAARQRARYLRLV
RPPAPAELRRSRGRRRRETLIHDTLRDLCVCVSMIALMLCVTYGSSFSHHYHLNKAVRKQ
FIRNDDNDFMSIKTHEDWWKWTETRLLNQLYKNASTKTEQSHILMGEPILWKSEASSSFQ
EQVPRATFVPGRLRSFFARSGASTYPHSIVMVPTATAQKTCGRLGCYSGPSTTIGLGHTK
SDATSKLNLLHSGGWLGRRTVALKVQFTLYSPAPNLFTSVTLLTEQSPTSVLVPSSNVQS
VRVYHTPAVWDYVVMVCQTSFCHKPKGFFMFPLPPLQLIFLLLSLLQLCLQVCAVRQQGL
MGYWRRPHNWLELTLLTVTLVYYVYYIYHSIIILEAVELLQRHRGHVDVSVLASWEQDVR
ALRGVTLFLLTLKCVTVLSRNRTLASSAALLTRSLSSLLWPTLSGLILLVALSCAGNLLF
AQSSWAFSSIPRSLQTLLCHFWGLRPTRSLHRLLSGRDLLYSGALYLSSTVVWTAGVLGL
VSTVVRVAKRSQSRWDIFTAADLARYIRRRISEVTGQRELKWIDDHVESRTYYLEEFESL
VDELLFRLNALSSCLHHTQPPKLHHDVLEQSPVTSPLQEPSNTDTQDFVRRLVAQQTIR
NT seq
8640 nt
NT seq
+upstream
nt +downstream
nt
atgtatacacgtcacgttaatgtgtcgtctcctgcagacagagttcagactgggagaacc
tttgttgtggaggtttctggaaacttggctggacgtcccgaccagcccacagggattcct
agtctggcaggaccggacctctccttggtctctgtggagttcctggacatgactgctaaa
ggtcaaagttcacatcatgtcagcgtattggatgatggctccttttctgtgtcaacacac
tggattttagaaactccaggaaaatatgaaatcaatgtcagagtgtccaacctcctctcc
acgctctcctccactctccagctcttcgtcttgcagccctctccacagatctctctgctc
cacgggcccctgggcgtcccctcctgcgttcaccctcaacagcccacctcgcacagtgtg
accacacaggcagcccatgtgggcgaccctgtcacactgcaggcaaacgcagtcgtgctt
cctgctgtttctgaccttaaagtgaaggtttcgacgaatcatctgagagctggagcgagc
gtctctctggatgtggagctgttcacgaccatgaagcacctacttgtcctcgacctcacg
ctcactgccgagtacgagcgcagccacgagagcgacgtcgacctcagcagcgaaggacat
gcaagcaaaattaccgactggaaaaacagcactgatcgagacttgctgctctccactgcg
ctgcctcaggccttcaaggtgtatgagcaaatctgtgccctgaggccttctgggagctgg
atgtcagccgttcaaacgcacttagagttcagcctggaggtcgtcagccaagggcgttat
aatgtcacagttgaggcttttaacccagtcagccgggcctcattccaaacacacatcctg
gttcaggatcccgtgggagagctggagttgagcgttccacgtgcgatcagaacaaatcag
aaacacgtggttttatttagcgtcgcagcaggatcaaacgtgaccgtctctctgctggtc
aacgcaacattactatacagaaacagcagctacgccacaggagaggaggcggcggcggtt
ctgctttttcaccacgccgggacgtttccgtttgagctcagagccacgaatcaagtgtct
tctcaaaacaagagcgtcagagtgtgtgttgaggaaaacaggaagtcgtcgccacaagtt
acagttgatgcaaactgggaaccacacaccagtcaaattcccagcctaggtgacaatgtg
cggatctatgcagaaaagccagcttatcccacgaacacagacataaccttcgtggctgtg
gctgatgcaccagagcctgtggagttcatgtggcactttggagactctgtatcagtcaga
actacctcaagagccgtcacaaaaagatacaacaaacccggcaggtttgatgtatttgtg
ctgatgtctgctggtcaggcgtccgtcacctctgacctgctccctctggtggtccagaga
gcggtgaagctcaacaggctcgtgcaccaggcctcggtgctgcagaatcagacggtaacg
ctgagctgccgggtcaacgtgggcaccgacctcaccttccactggagcttcggggacggt
tcatccaggctgggacagagcacggagcagcacgtgttccacagaacaggggagttcaga
gtcgaggtgaccgcctctaacctggtcagctcctcctctctgagcagtcacatctttgtt
gtggaccgaccttgtcagcctccaccggtcaaaaacatgggtcctcccaaactacaggtg
cgtaggtatgaagttatccgtctgggggtgacctacgagactgaaattgactgcgacaca
tcaggaggccttcagtacacttggactctgttggactctgcaggccggatcctccgtctg
cctcgcacagacacacacagacagagtctcacactgcagagccacctcctgcagtacgac
acctacagcgccacagccagggtccaggtcgtcggtagtgtggtgtatagtaactacagt
gtgagagttcaggtgatgccgagccctcctgtggtttttatccagggtggcaccaacgtc
ttcattaacagcgggaacgccaccgtactaaccctggacgggcagagatcttacgacccc
gacttccccatgaacctgctcagctacagctggatgtgtaaacctctcagctccatcagc
acctcctgtttcaaccaacacatttccacctcctcgcctgtgctcactgttcctgctggt
ttcttaaaacgtgacttcgaccagttccagttcacactcaccgtacgcagcggggagcgc
tcagcttccgcagagaccttcctcacagtcaaaccaaatctgattgggaagttgtctgtt
tcctgccctcgttgccagggcgaccaggtgaactgggatcagtcgttctctgtcgacacc
tggtgtgaagactgtgatgtttccctcgctcacatccaatacacctggagtctgttcctg
gtcgacgcctcctccagacctgtcatagaagtgccattttgttccacaatggatctcggt
gctccttccacaatcatcgaggatcagactgctgagacgtccaccctgcgtccgtctgac
acatcacacgacgcccgaactgatctcaggacccggaaaattggagcgagaaggcaatat
cttggcctgactgacggagaggagcccttatatcattccccaggagagtttccccctgcc
gagcatcacccctccactgactacccgccactcacccttgacagcagcagagaccaatat
tcagagcagtttggccaaagcgacattatcagtgaattcccagttcactccgacccctct
gctgagtgggagttttcttttccggtcctggagggtggtgacatgggagatcaagctgag
tctgttacagagtcagattacgacgttcactccccacatgcagaggaaggagaccctggg
agctctgcaggaagacccacaggtgtggatggcgaaacattcagtccaggagaagacgca
gtattcgatccagcagaacatgaatctgagggcagtaatctggtggtttccagaccctct
gtcctgatccaggagccaactttacttgatttgcctcgagacccagtggacggagacatt
ttcgagtcctacacttacacaggaatttcctcctctacgctcagggtcagacccttcagt
ctgaggccggggagcagatacatgttggaggtcacagccaaatgtcggaacagttttgtc
ggccggactcagctgttcttgaaatccaagcctgctccagagggcgtgaagtgccaggtg
cagccggtcagagggacggagctacacacacatttcagcatcttctgcacgtcagggaaa
gaggatctactgtatgagtacagcttcagtgtaggaggcagaccccgtagggtgctgtac
caggggagagatttccaatactacttcaaccttcctgcaggtgacgccagtgatgactat
aaagcaacaatttatactgaaatccgaagcagcacatatgggacggccactaaaccctgt
cctgtcagcgtccgagtccagccaagcttcctcagagacacatcctcccatcaggaccct
gacctcgagctgtcagcggcaggtctgaggaacctgtcggctctgctgcagcttgggaac
agtcatgaggttcgtaactacgtcagtgttctagccaccgtcctgaacagactcagcctg
gactccgaggccaacgcacatgctcagagactcatccgcaatgtgctcatttgcacagtg
tgtgagctcaagagcggtacagcggaacaggagtcaatggttgacagcatctgcacttta
aaagaccttttacaagtttcaaatcaggtatctttagcaagtgtcagacacgtgacactt
cacattcagaccatctcagacctgtttttggagtccagcgctccagtccaacatcatctg
gaccacgagaccctcgacactctgcttgtcctgctgtcgtacatcctgcaggctgctgtc
acagatcatgacgtcacacccgaaacagccaacaagggcaatatcacacaggtactggag
tcagactctgtaaataccactgcaactcccaggaggtgcataccagcatcatccagggac
cccatcaaacagggaggatcaatttcagcagagcagaggacacggcttgttgatgatatt
ctgcagactgcctcagacctgatgctgaagtacattttcttgcacaaggtccaggagcac
agagtcagcacaggcctcatctccttatacgctgcaaaccaaaaccaaacatccacggtc
atcagcagcggctcagccaccttctacctgcctccttctctgatccagcttttgttcatt
catggcagtggagcagcagagagcacgcagcggcagccatgcgtgctcagcgtgttgacc
acgctcaccctcaacccttacacctgcgcctgcagtcccacacagctcactggaccagtg
gttgacttgagtctgtacaagtgcagcgggaggagaaagatcactgtccgttccctcaat
cagccaatcgacatcgagctgcaacatccaccaagaaacaagagctccgtgcgtgagtac
gtcctcctccgcagccaggtcaattaccacagcttcaacattaccagggaccatctgcag
caggtcatccagctgagcgtggcgttcacgccgccgcccgacagagtgtttcccatcatg
ctgctcttcaggatgtgtgagaggccgactcccagcatgcaccacctgcacaggactcat
cagtgggagagcaacaacatacgtatcactctgccctcgtcctacctcaacgctgcaggg
gtcggtcacctggctctgctgaatgctcattttgggaaagagcgcagacacaagcagctg
agtgaagagatcagctacagtctcactgtggtcagcagtcaatgcttgacctgggatggc
caccagggggcctggacacatctgggctgcaggacacagcaagaagacacaacagctgct
gtcaactgcagctgtcaccagttgaggcctctgactgtggtgcagcaccagatccagacc
agacatgacacagatgatctggacccgttcctaagtgtgtcccgagatcacactgtgctg
gtcgtcatggtgctgtgtctgtgcctgtacatccccgggctggtggcgtgtaagagagct
gatgacgtctcagagaagaatggaagagtccattatctttctgacaactctccattggac
ccacatctttatgctgtaaccatccacactggtgtctgctctgcagccagtttgagcgcc
aaggtgtacataaagctgtacggtgaagatgggatcccacacacaagagaattacaagtc
ccaggatgcactctgttcaggagaaactctcaggacacatttatactgagtgcagcagac
agcttgggctccgtgtggagggttcacatctggcatgacggctctggaccttccccgaac
tggtacctcaaacatgtagaggtatctgaggtgaccagtgggcatgtaaagggatgcgtg
tggctcttcgtgggtcagtgctggttggccgtgaacaaaggtgatggccaggtggagaga
gcgctgtgtgtttgcacccacggaataggctttgctaagatgttgtgctttaaattatcc
gacttcttggccgacttccacatctggatgtctgtgtaccgctgcccctaccctaacttg
ttcacccacactcaaagactcagtgtgtgtctgctgctgctgttggggtacgcatgtgtc
aacacactcatcatatcgcaaatggacgatcagttaccgatggagttgggtattcttgac
gtatcctccgtctctgtgacaacaggactgttgagtgtggtggcagtgttgcccggaaca
acaattatatcttctctgtttcgactgcatgaggtcaaagtgacaaggtcgggagtccaa
catgcaaaaggcagaaagactgagaatgatgactttgaaggtgagggaacaaacttgctc
ccagtgtccactgcgatgctggaaaataaagaacctgcaaaccaaccagatgtgagagta
agaaaggacgatgatccggcagttgagagcagtgcgggactagcgatttggaatttgtcg
ttgatttcaaagggggaaaatgatgatcgagcaactctgggaaaagaaattcatctttca
agtgaaagtagcaagttttgtgggacccagaaagatgttttgtctgtatgtatgagagag
gaagatcaagacaagaagaagaaagaagatactcaaggaaaccgtttccatgtaatgggc
aaactgaacaggagaaaagttggacgagcgtccccgtggtgtcaatctttggcctggacc
ctctgtctgctgctgtccctctcctgcctggtgctctctgcagtgctgggaatgagattc
agcagcagcaaggttttgctttggatccactccctatttttctctctggtttcttgcatc
ttcttcatccagccggtcgcgatactcactgtggcagtgatcgtctcctgttggtacaga
aacagaacagactttcatactttctccacaattaaagagtttgagattcaacagtgcagc
cacagtgctgctaatcgaccagaggagcagttcaggcctcctgatttccctcaggacaca
agctcatacctcgacaagctgcttgctgctcgtcagcgagctcgctacctgcgtcttgtg
cggccgccggctccggcagagctgaggagaagtcgtgggaggagaagaagagagactctc
atccatgacactctcagggatttgtgcgtctgtgtctccatgatcgcactgatgctgtgt
gtaacatatggcagctcattcagtcatcattaccacctcaataaagctgtcaggaaacag
tttatacggaatgatgataatgactttatgtccataaaaacacatgaggactggtggaag
tggacagagacccgtctgctcaatcagctgtacaagaatgcatcaaccaaaactgagcag
tcacacatcttgatgggagagccaatcctgtggaagtcagaggcatcgagctcgttccag
gagcaggttcccagggcgacttttgtaccaggacgtcttcgctcattcttcgcaaggagc
ggagcatccacttaccctcactccattgtcatggttcccacggcaacggcccagaagaca
tgcggtcgcctgggctgctactcggggccgagtactacaattggcttaggccacacaaag
tcggacgccacatccaaactgaatctcctgcactcaggcggctggttgggcagacggacg
gtggccctgaaggtccaattcaccttgtacagccccgcacccaacttgttcaccagtgtg
accctgctcactgagcagagccccaccagtgtcctggtgccctcttctaacgtgcagtct
gtcagggtgtaccacactcctgctgtgtgggactatgttgttatggtgtgccagaccagt
ttctgtcacaagcctaaaggttttttcatgtttcctcttcctcctctccagctcatcttc
ctcctcctgtctctactgcaactctgtcttcaagtgtgcgccgtgaggcagcaagggctg
atgggatactggaggagaccccacaattggctagaactcactctcctgacagtgaccctc
gtgtattatgtttattacatctatcactccatcatcatcctggaggctgtggagctgctg
cagagacacagaggacatgttgatgtcagcgtcctggcttcatgggaacaagacgttcgt
gctctgcgtggcgttacacttttccttctcaccttgaagtgtgtgactgtgctgagcagg
aacaggaccttggcttcctctgctgcactgctcactcgctccctctccagcctcctctgg
ccaacgctttcaggtctgatcctgttggtggcgctgtcctgtgctgggaatcttctgttt
gcacaaagctcctgggctttcagctccattcctcgctcccttcagactctgctctgtcac
ttctggggtctcagacccaccaggagcctccatcgccttctctctggacgagacctcctg
tacagtggagctctctatctgtcttccactgtggtgtggacagcaggggttctcggtttg
gtgtccaccgtggtcagagttgccaaaagatctcagagcaggtgggacatcttcaccgcg
gcagatttagcccgctacatcagacggaggatttctgaggtcactgggcagcgtgaactc
aaatggattgatgaccacgtggagagcagaacttactaccttgaagagtttgagagcctg
gtggacgagctgctgttcagactcaacgctctctccagctgcctgcaccacacgcagccc
ccgaaactccatcacgacgtgttggagcagagtcctgtcacctcacccctacaggaaccc
tccaacacggacacacaggactttgtgagaagactcgtggcacaacaaacaatcaggtag
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integrated database retrieval system
