Hippoglossus stenolepis (Pacific halibut): 118098930
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Entry
118098930 CDS
T08308
Symbol
lama1
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-1
KO
K05637
laminin, alpha 1/2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118098930 (lama1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118098930 (lama1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118098930 (lama1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_B
Laminin_N
Laminin_II
Laminin_G_3
Laminin_I
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
118098930
NCBI-ProteinID:
XP_047200554
LinkDB
All DBs
Position
19:20217686..20242951
Genome browser
AA seq
3079 aa
AA seq
DB search
MKILILLLLMEQTAAQQRGLFPAILNLASNAAISSNATCGDPEPEVYCKLVEHVPGRIIK
NSHCPRCDANSVLSKERHPITNAIDGTNQWWQSPSIKNGQRFHWTTITLDLKQIFQVAYI
IIKAANSPRPGNWILERSLDGVTFEPWQFYAISDTECLTRYNIPPRRGPPTYKSDTEVIC
TSYYSRLNPLEHGEIHTSLINGRPSADDLTSVLLNFTSARYIRLRLQRIRTLNADLMTLS
ARDPREIDPIVTRRYYYSIKDVSVGGMCICYGHAKSCPLDPVTKRLQCVCEHNTCGESCN
QCCPGYHQDPWQPGTVSEGNKCERCNCHNKAVDCLFNQTVSDLFLSLNTRGVRHGGGVCI
NCQQNTAGINCEMCRDEYYRPAEVSPYSDFPCVQCNCDLRGSKSSVCSRDDSQSGVSAGQ
CVCHEGFAGRQCDRCAFGYRGFPRCGRCECDLSGSTNADPCSPCICKMNVMGAHCDLCKP
GFYNLNHNNPLGCTDCFCFGVSXVCESATWSTAQVFQTEAWLRPSQSLHTPPSLHGNELF
IPGNASSGHTHQQVLSWAAPAGFLGNKLVSYGGYLNYSVAYDVTMDNEDHSIPAHCDIII
EGNGQTLRLSPPLVLLLSPLAEHSVSVAMIPQKFVDDQTGFPVPRDDLLSVLYGVTSLTV
RVHLNNSANWPIRLRSVSLDVADSESVSGVQAVAVETCECPWGYSGTSCETCLTGFYRVG
GVLFGGNCMQCECNDHATECNSNGVCLGCTHNTTGPHCDQCLPGFYGDPAEGTANDCRLC
PCPLTEPSNSFSPTCMLESSGQVSCDQCQDGYTGSNCERCASGHYGNPQMVGGACVRCDC
NGNVDVSEMGHCDIITGECLRCLGNTTGRHCEVCQPGYYGDAVHAKDCRECGCVSGALSS
VCDVTTGQCKCREQVTGQTCDRCQSGFFGLQSGRGCRACNCSQSGSVSESCDEDGRCRCV
EGVGGDKCDRCRRGYYGFHGNGCTACTCDHTGGNCNPDNGECICPIHTEGDTCDRCETGH
WGHNLTTGCKPCSCSTAGSSAPQCDVMNGQCPCREGFSGRSCEQCAPGHHGYPVCSACGC
DMSGTEERVCNTTLGVCDCRQTGECLCKVGVSGRRCEECVSGWFGLSTTNPDGCSKCFCS
GLSRVCEEKGGLIRTPITLDHSPALLSLVSQSNLQGVVSGVYQQGGGDMLLDTRHLNVSR
LTGPLYWRLPPQFEGTKLMSYGGLLSYIITFYAEDGMGLSNQEPQVLMRGGTLRKLVIYT
DMVAPSNGVTTQHDIRMTEHKWKYFNSVSEKAVSHSDFMSVLSNVQYVIIKASYGTRLQQ
SRISNMTMETAGEVESEEGSEVTGGVARLIESCICPPGYMGLSCQECAAGYFRQPQSELS
SQSQKLMFVRPCVRCRCNNHSESCDTETGECQDCELHTSGRSCERCAPGYYGNTVSGSIS
DCSLCACPLRDNSFSPTCESDGALGDFRCTACQTGYEGRYCERCSVGYYGNPSLQGGRCS
QCTCSRWGSVHSLCDAQTGQCECNPGVKGQSCDQCDERHILQGGECVSCDDECTGVLLTD
LDELHYHFLSVNVSGVTFAPYRQLVVLENQTRDMQVILSEKSSVSVHVSRVKDELSHVTS
DLRALLQQVTHLSHHMEEVDLSINNSLSQSALLLQSISSLQDSIQVLLREAEHLNQTTEE
ELESANQTHLLEELEFMLENMRAVNLPAANAAAHQELSLSESLAHSLQVHFLSSRRQIDN
RLLLLSNSLTDARETLQNAHMHLNNATQRNTETHNLLNNTHTLLHQYQSVHQHLTDECLS
VEGVMEENQLMLDDSISLINELTNTTTQVEVLAGQLDQWRPLLREQVDSLVVGLKMTDAL
ENVYRAENHAHQLQSHAHSLHSSLLSVCNMSRNGTQLVQIESDITIIMRVESAQQVASVA
YVSASHALNMTAQSEQPLSKDVRANQNISSAVLQESRRINETVEDLQLKVSMVTSRLGLI
KDSVHNSSLLLRQPIRELQSLSNGSAVSLQQAQLQTAAAHSGLQVALQQLERLKDQLQDS
SSVVENTVKTVTETNQLVAHTDTAANDAQRKLEEAEHRTEHLMERIKPLSILGETLSRNL
SDIRELIDQARRQAASIKVAVQADRDCVRSYKPQIDSSNFNTLSLILKTTSKDNLLFYLG
GITTVDYLAVEMHDGKVSLLWDLGSGTNKLEFPGLDITNNRWTRINATRFGAQVSLSVHQ
LDSEVSLLPTVTGRSVGSSRVLDIDKNTVIHIGGLGAHTQSPAALRSSTFQGCFGEALLN
ERNIGLWNYDSREGACGGCFSSPQTEETSFHFDGSGFSLVQKSLRATSTSIVFQFKTLSP
GGLLLYLASNNTRDFLSIELVEGRVRLTFDLGSGVLILTSNRKYNTGVWYKITLQRNKRK
GYLSIMAADQSSEKEVLEAESPGIASDLNRSDLDPIYIGGLPASRPIRRQVVSRSYVGCI
KNVEIARSNFDLLRDAYGVRKGCVLEAVRSVSVLSGGFVQISPPSFSQEAELLFSFSSNN
QSGVLLAALSDDRLHKQYFLCAHLVLGTLEAELGEVGGATRKVKVMKPDGSFGDGEKHSV
IITINRKSLSVQVDEDHLKSVPLLPGGFPRLSPASFFIGGLPSAEDSHLPIRLQDLSRSF
RGCIQDLVVGGALVDLSGAVRYEGVELDSCLLQKRVGAVLPDDQDVEPTPDPTHVYVATP
TYLSALTPGALTCVSEAEPSFLSSAAQFGSSRHSHMTFVINPNTVRKSVSVRLSVRSRAA
NGLIVLLSDSKHTDFIVVKLMGGRLMMSADLGKGPASVTSSVAINDGDWHAVSAEVSRRS
VSLSVDGLSLESVTVKGNQLDVDNTLYLGGLPHAYTSRRINVSSSLQGCIRSVSLNGAML
DLTKPASQDDVTSCFTKDQTGSYFNGSGYAILMHDGYKVGSDVSVSLEFRTSQSEGVFLG
ISSAKVDAIGLEMVNGQVVFNVNNGAGRVSVRSIGQGLCDGQWHRLLARKTKHSLSLNVD
GRSYTTPNPYPQSTSAETNNPVYVGGYPVGVRQNCLSSSSRFRGCLRNLQLIKSHLSNGL
DLSSAHFLLGVTPNSCPVV
NT seq
9240 nt
NT seq
+upstream
nt +downstream
nt
atgaagattttgattttgttgctgctgatggagcaaactgcagctcagcagagaggtctg
tttccagccattttgaacctggcgagtaacgcggcgatcagcagcaacgccacgtgtgga
gatccagaacctgaggtttactgtaaactggtcgaacacgttcccggaagaatcatcaag
aactcgcactgtcccaggtgtgacgccaactcagtcctctccaaagaacgtcatccgatc
actaacgccatcgatggaacaaatcagtggtggcagagtccgagcatcaaaaacggacaa
cggtttcactggaccaccatcacactggatctaaaacagatttttcaggtcgcttacatc
atcatcaaggcagctaactctcctcgcccaggtaactggatcctggagcgctctctggat
ggtgtgacctttgaaccctggcagttttatgccattagtgatactgagtgtttgactcgt
tacaacatcccaccgagacgcggaccaccgacgtacaagagcgacaccgaggtcatctgt
acgtcgtactactcccgactgaacccactggagcacggagagattcacacctccctgatt
aacggacgacccagtgcagatgatttgacgtctgttctcctgaacttcacgtcggctcgt
tacatccgactgagacttcagcgaatcagaactctgaacgccgacctgatgacgctgagc
gcacgagacccccgagagatcgaccccatcgtcacccggaggtattattactccatcaaa
gacgtctctgtgggggggatgtgtatctgctacggacacgctaagagctgcccgctggac
cctgttaccaagaggctgcagtgtgtgtgtgaacacaacacctgtggagagagctgcaat
cagtgttgccctggttaccaccaggatccatggcaaccaggaactgtctctgagggaaac
aagtgtgaaaggtgtaactgtcacaacaaagctgtcgactgtctcttcaatcaaaccgtg
tccgacctcttcttgagtttaaatactcgtggcgttcgtcatggaggcggagtttgtatc
aactgtcaacaaaacacggccggcatcaactgtgagatgtgtcgagacgaatactaccga
cctgctgaggtttctccatattcagattttccgtgtgttcagtgtaactgtgacctcaga
ggatcaaagtcttcagtctgcagccgtgacgactcacagtcaggtgtgtctgcaggtcag
tgtgtgtgccacgagggtttcgcaggtcgacagtgtgaccgttgtgcgtttggatacaga
ggtttccctcgatgtggtcgttgtgagtgtgacctttcaggaagcaccaacgccgacccc
tgcagcccctgcatctgcaagatgaacgtgatgggagctcactgcgacctctgtaaacca
ggtttctacaacctgaaccacaacaacccgctcggctgcaccgactgtttctgcttcggt
gtttcanncgtgtgtgagagcgccacctggtccacagctcaggtgtttcagactgaagct
tggctccgcccctctcagtccctccacacccccccttctttacatggcaacgaactcttt
atccctggcaacgcctcatctggccacacccaccaacaagtgctttcatgggcagcacct
gctggtttcctaggcaacaagctcgtgtcttacggaggttacctgaactactcggtggcc
tatgacgtgacaatggataatgaagaccactctatacccgcccactgtgacatcatcatt
gagggtaacggccagactcttcgtctctcaccccccctcgtcctcctcctctccccactg
gccgagcactccgtttccgtggcaatgatccctcagaagttcgtggacgatcagacaggt
tttccagttccccgcgacgacctgctgtccgtcctctacggtgtgacgtcactgacggtc
agagttcacctgaacaactctgccaactggccgattcgtctcaggtcagtgtctctggac
gttgctgactctgaatcagtctctggcgttcaagccgttgccgtggagacatgtgaatgt
ccgtggggctacagcggcacttcctgtgagacgtgtctcacaggtttctacagagtgggc
ggagtcttgtttggagggaactgtatgcagtgcgagtgtaacgatcacgcgaccgagtgc
aactcgaacggagtttgtttgggttgtactcacaacaccacaggtcctcactgtgatcag
tgtctccctggtttctatggcgaccccgcagaggggacagccaatgactgtcggctgtgt
ccgtgtcctctgacggaaccgtccaacagtttcagtcccacctgcatgttggagtcatca
ggtcaggtgtcatgtgaccagtgtcaggacgggtacacggggtcaaactgtgagaggtgt
gccagtggtcactatggtaacccacagatggtgggcggggcctgtgttcgctgtgactgt
aacggtaacgtggacgtcagcgagatgggacactgtgacatcatcactggggagtgtctg
cgttgcctcggtaacacgactggtagacactgtgaggtctgtcagcctggttactatgga
gacgccgtgcacgccaaagactgtcgggagtgtggctgtgtcagtggcgccctctccagt
gtgtgtgatgtcacaacaggtcaatgtaaatgcagagaacaagtgactggacaaacctgt
gaccgttgccagtctgggttcttcgggctgcagagtgggcggggctgcagggcttgtaac
tgcagccaatctggatctgtctctgagtcatgtgacgaggacggccggtgtcggtgtgtg
gagggcgttggtggagacaaatgtgaccgctgtcgtcggggttactatggtttccacggc
aacggatgcactgcatgcacctgtgatcacactggtgggaactgtaaccctgacaacgga
gagtgcatctgccccattcacacagagggagacacctgtgacaggtgtgagacaggtcac
tggggtcacaacctcaccacaggctgcaagccatgcagttgcagcacagcaggaagctcc
gcccctcagtgtgatgtcatgaacggtcagtgtccgtgcagagaggggttctctggtagg
tcatgtgagcagtgtgcacctggtcaccatggttacccggtgtgctcggcatgtggctgt
gacatgtcgggaacagaagagagggtctgcaacacgacgctcggagtgtgcgactgtcga
caaactggagagtgtttgtgcaaggtgggcgtgtcggggcggcgctgtgaggagtgcgtc
tctggttggttcggtttgtcgaccacgaatccagacggctgctcgaagtgtttctgttca
ggtctgagtcgagtctgtgaagagaagggaggactcatcagaacccccatcaccctggat
cactctcccgctctcttgtcattggtcagtcagtctaacctgcagggtgtggtatctgga
gtttaccagcagggcggcggcgacatgctacttgacacccgtcatcttaacgtcagcaga
ctcactggccccctctactggagactgcccccccaattcgaaggcaccaagctgatgtcg
tacggcggactgttgtcttacatcatcaccttctatgctgaagacggtatgggactgtcc
aatcaggagcctcaggttctgatgaggggcgggactctgaggaagcttgttatatacact
gacatggttgcccctagcaatggcgtcacgactcagcatgacatcaggatgacagagcac
aaatggaagtattttaactcggtttcagagaaggcggtgagtcactctgacttcatgtcc
gtccttagtaacgtccaatacgtcatcatcaaagcttcatatgggaccagacttcagcag
agcaggatctctaacatgaccatggagacagcgggggaggtggagtcagaggaagggtca
gaggtcacggggggtgtggccagactcattgagtcctgcatttgtccacctggatacatg
ggactgtcctgtcaggagtgtgcagcaggttatttccgtcagcctcagtctgagttgtca
tctcagagtcagaagttgatgtttgttcgtccgtgtgttcgatgtcgctgcaacaaccac
agtgagagctgtgacacggagactggagagtgtcaggactgcgagctacacaccagcggg
cgaagctgtgagcggtgtgccccagggtattatgggaatacagtcagtggctcaatcagt
gactgttcactttgtgcctgccccctacgggacaacagtttcagtccgacttgtgagtca
gatggagcgctcggggattttcgctgcaccgcctgtcagacgggatatgaggggagatac
tgtgagaggtgttcagttggttactacggtaacccctcattacaaggagggaggtgttcg
cagtgcacgtgcagtaggtggggctccgtccactcattgtgcgacgcacagacaggacag
tgtgagtgtaatcctggggtcaaaggtcaatcgtgtgaccagtgtgacgagagacacatc
ctgcagggaggagagtgtgtatcatgtgacgatgagtgcaccggcgttctgttgactgac
ctggacgaactgcactaccacttcctgtctgtcaatgtgagcggtgttacctttgcacca
taccgccagctggtggtgctagagaaccagaccagagacatgcaggtgattttatcggag
aaaagttccgtcagtgttcacgtgtccagagtcaaagacgagttgagtcatgtgacctct
gacctccgagcgttactacagcaggtcacacatctgtctcaccacatggaggaggtggac
ctgtctatcaacaacagcctctcccagagtgcactgctgctgcagagtatcagcagcctt
caagacagtattcaggtgctactgagggaggcggagcatctgaaccagaccacagaggag
gagcttgaatcagccaatcagacacatctgttggaggagttagaattcatgctggaaaac
atgagagccgtcaatctaccggccgccaacgccgcagctcatcaggagctcagcctatca
gagtctctcgctcactcgctgcaggtgcacttcctgtccagcaggaggcagattgacaac
aggcttctcctcctctccaactccctcactgacgccagggaaacgctgcaaaacgcacac
atgcacttaaacaatgctacacaacgaaacacagagacacacaatctgctgaacaacaca
cacactctgctgcaccaataccagtctgtccatcagcatctgacagacgagtgtctctct
gtcgagggagtgatggaggagaatcagctgatgttggacgacagcatcagtttgataaac
gagttaacaaacacaaccacacaggtggaggtgttggccggtcagctggatcagtggcgc
cccctgttgagggaacaggtggacagtttggtagttggacttaagatgacagatgctctg
gagaatgtttaccgtgcagagaaccacgcccaccaactacagagccacgcccactccctg
cacagctctctgttgtcagtgtgtaacatgtcccggaatggaacccaattggtccagatt
gagagtgacatcacgatcatcatgcgagttgagtccgcccagcaggtggcatcggttgcc
tatgtctccgcctcccacgctctcaatatgaccgcccaatcagagcagccgctgtccaag
gacgtcagagccaatcagaacatcagctccgctgttttacaagaaagtcgacgaataaat
gagacagttgaagacctacagctgaaggtctccatggtaaccagcagactgggacttatc
aaagacagtgtccataactcaagcctcctactccgtcagccaatcagagagctgcagagt
ctctctaacggttcagctgtgtcactgcagcaggctcagcttcagactgcagcagcacac
tctggtctgcaggtggcgctgcagcagctggagagactcaaagatcagctgcaggattct
tcttctgtggtggaaaacacagtcaaaacagtgacagagaccaaccagctggtggcgcac
acagacactgctgccaatgatgcgcagcgtaagcttgaggaggcagagcatcgtacggag
catctgatggagcgcataaagcccctgagcattctgggagaaacactgagccggaatctg
tccgacatcagagagctgatcgatcaggctcgtcgacaggctgcatcgataaaggtggcg
gtgcaggcggacagagactgtgttcgatcctacaaacctcagattgactccagtaacttc
aacactctgagtctgatcctgaagacgacgagtaaagacaacctgctcttctacctgggc
ggcatcaccacggtggactacctcgctgtagagatgcatgatgggaaggtttctctgttg
tgggatttggggtcaggaactaacaaactggagtttcctggactcgacataaccaacaac
aggtggaccagaatcaacgctacacggttcggggcgcaggtttctctgtcggtccatcag
ctggattcggaggtgtctctgttgcccacggtaacaggtcgatcagtgggatcgtcccga
gttttagacatcgacaaaaacacagtgattcacatcggaggcctgggcgctcacactcag
agccccgcagcgctgaggtcatcgacctttcagggctgttttggcgaagctttgctcaac
gagaggaatatcggactgtggaactacgacagcagagaaggagcatgtggaggctgcttc
agcagtcctcagacggaggagacgtccttccactttgatggatctggattctcattggtc
cagaaatctctgcgtgcgacgtcgacgtcgatcgtgtttcagtttaaaactctgtcgccg
ggcggattactgctctacctggcttctaacaacacgagagacttcctgtccattgagctg
gtggaggggcgtgtccgtctaacctttgacctcggttcaggcgttctgatcctgacgtcc
aacaggaagtacaacacaggagtgtggtacaagatcacgctgcagaggaacaaacgcaaa
ggatacctgtcaatcatggctgccgaccaatcatcagagaaggaagtgttggaggcggag
tctccagggattgcctccgaccttaaccgctctgacctcgaccctatctacatcggagga
cttcctgcctccagaccaatcaggcgacaggtggtgtccaggtcgtacgtcggctgtata
aagaacgtggagatcgctcgctccaacttcgacctgctgagagacgcatacggcgtcagg
aagggctgcgtactcgaggcggtgcggagtgtgtcggttctgtccggaggcttcgttcag
atctctcctccatcctttagtcaagaggcggagcttctcttctccttctcttccaacaac
caatcaggagtcctgctggctgcccttagtgacgatcgcttgcacaaacagtacttcctg
tgtgctcacctggtcttaggcaccttggaggcggagcttggtgaagtgggcggggccacc
cggaaggtgaaagtgatgaaaccggacggatcatttggtgacggagaaaaacactctgtg
attatcaccatcaacaggaagtctctgtccgtgcaggtggacgaagatcacctgaaatca
gtccctctgttgccaggcggatttcctcgtctgtctcctgcctccttcttcatcggtggg
ctgccctcagcagaggattcccatctaccaatcagattacaagatttatccaggtcgttc
agaggctgcatccaagacctggtggtgggcggagcacttgtcgacctatcaggagctgtg
aggtatgagggggtggagcttgacagctgtctgttgcagaagagggttggggcggtgctt
cctgatgaccaggatgtagaaccaactccagaccccacccacgtatatgtagccacgccc
acatatctgagtgccctgacacctggagcgctcacgtgtgtgtcggaggctgagccgagt
ttcctgtcgtcagccgctcagtttggttcgtccagacacagtcacatgaccttcgtcatc
aaccccaacaccgtgaggaagagcgtctctgtgaggttgtcggtgcgaagccgggctgcc
aacggtttgatcgttctactctcggactccaaacacacagacttcatcgttgtcaaactg
atgggagggagactgatgatgtcagctgacctgggaaaaggccccgcctctgtcacctcg
tctgttgccattaacgacggagactggcacgctgtgagcgctgaggtcagccggcgctca
gtgtcgctgtcagtcgatggtttgagtctggagtctgtgacagttaaaggaaaccagctg
gacgtggacaacacgctgtacctgggaggactaccacacgcatacaccagcaggaggatc
aacgtcagcagcagtttacaagggtgcattcgctcagtcagtctgaacggagccatgttg
gatctgaccaaaccagcctcacaggatgatgtcacttcctgtttcactaaagaccagaca
ggaagttactttaatggcagcggctacgccatcctcatgcatgatgggtataaagttggc
tcggacgtgtcagtatctctggagtttcgaacgagccaatcagaaggagtatttctggga
atcagcagtgcgaaggtcgacgccattggactggagatggtgaacggacaggtggtgttt
aatgtaaataacggggcgggacgagtgtctgtgcgttcgattggtcaggggttgtgtgat
ggacagtggcaccgcctactggccagaaaaaccaaacacagcctgagtctgaatgtagat
gggcggagttacaccacccctaacccctacccacaatccacctcagcagagaccaacaac
cccgtctacgtgggagggtatccagtgggagtgagacagaactgcctgtcgagcagctcc
aggtttagaggttgtctcaggaacctccagctcatcaagtctcacctgagcaacggtctc
gacctgagctccgcccacttcctgttgggtgtcacacctaactcgtgtcctgttgtctag
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integrated database retrieval system
