Hippoglossus stenolepis (Pacific halibut): 118099168
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Entry
118099168 CDS
T08308
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118099168 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118099168 (hbs1l)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118099168 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
118099168
NCBI-ProteinID:
XP_034999393
LinkDB
All DBs
Position
20:10670721..10690498
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AA seq
695 aa
AA seq
DB search
MSRHRNVRGYNYDEDFDDDDVYGQSVDDDYCCISPTTANQFIYSRQERQAPKGEPLEEEG
DEEVLVSPTVSHNLDPLEQAKLYSCLDHMRTVLGEAVPDSVLSQAAIRHGFDPQKALDAV
LSEDAKTAQVNVETDVVARVGQEKAPLPQRTKQAATAEKAKSRDVSQSKLDPEVVPKVAR
MTVSGKKQTMGFDVPSTAENGVATASVRRRGSPENATNATEATSKRPETPSKGSNGDETS
TVSTPGRSTGKSRQSINVKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNK
RTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFESNSKVVTLMDAPGHK
DFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMD
QVNWQQERFQDIISKLGHFLKQAGFKESDVFYVPTSGLSGENLTTRSSVSQLTSWYSGFS
LLEQIDAFKAPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTGDRILAMPPNETC
TVKGITLHDEALDWAAAGDHVSLTVTGMDIIKMNVGCVVCNPKEPIRVCTRFRARILLFN
IEVPITKGFPVLLHYQTVSEPATIRKLISVLHKSSGEVLKKKPKCLSKGMNAIVEVQTQR
PVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIKD
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgtccgaggttacaactacgatgaagactttgatgatgacgat
gtgtacggacagtctgtggacgatgactactgctgcatatcaccaacaacagcaaatcag
ttcatctattcacgtcaagagaggcaagctccaaagggggagcctctagaagaggaagga
gatgaagaggttcttgtctcccctactgtcagccacaaccttgaccctcttgaacaagcc
aagttgtattcgtgtctggaccatatgcggacagtgctgggagaagcagtaccagattca
gtcctgagccaggccgccataagacatggatttgacccacagaaggccctggatgcagtc
ctgtctgaagacgctaaaacagcccaagttaatgttgagacggatgtggtagcaagagtt
ggccaggagaaagctccacttccacaaagaaccaaacaagcggccacagctgagaaagct
aaaagcagagatgtgtctcagagtaaactggaccctgaagtggttcctaaagttgctcgc
atgaccgtctctggcaagaagcagaccatgggcttcgatgttcccagcacagccgagaac
ggcgtggccaccgcctcagttcgccgccgcggcagtccggaaaacgcaacaaatgcaaca
gaggccacctccaaacgtcccgagaccccgtccaaagggtcgaatggagacgagacctcc
acggtttccacgccaggccgctctactgggaagtcccggcaatccatcaacgttaaggcc
gagctggagaagagacagggcggcaagcctctgttaaatttggtggttataggtcacgtg
gacgcaggtaaaagcacgctgatgggccacctgctctatctgctgggcaacgtcaacaaa
cgtacaatgcacaagtacgagcaggagtcgaagaaggcggggaaagcctccttcgcctac
gcttgggttctggatgaaactggcgaggagagggacagaggtgtgacgatggatgtcggc
atgaccaagtttgagagcaactctaaggtggtgactctgatggatgcacccggacacaaa
gacttcatccccaacatgatcactggagctgcacaggcggacgtggccgtgctcgtggtg
gatgccagcagaggagagtttgaggcaggatttgaggcgggtggtcagaccagagaacat
gccctgctggtgcgttcgctgggcgtcactcagctggcggtcgccgtcaacaagatggac
caggtaaactggcaacaagagcgtttccaagatatcatctccaaactcggccactttctc
aagcaggctggattcaaggagtctgatgttttctacgtccccaccagcggcctatcggga
gaaaaccttaccaccaggagttcagtttcccagctcacctcctggtactctggtttcagc
ctgctggagcagattgatgcattcaaagctcctcagaggtctgtagacaaacctttcaga
ctgtgcgtctcagacgtgttcaaagaccagggttcaggcttctgtgtcacggggaagatt
gaggcgggttatgttcagactggggacagaatactggccatgcctcccaatgaaacctgc
actgtcaaaggtatcactctccatgacgaggctctggactgggccgcagcaggagaccat
gtcagtctgacggtcaccggcatggacatcatcaagatgaacgtgggctgcgtggtctgt
aatcccaaggagccgattcgagtctgtactcgattcagagcccgaatcctcctcttcaat
atcgaggtgcccatcacaaaaggcttcccggtgttgttgcattaccagacagtgagtgaa
ccagccaccattaggaaactgatcagtgttctacacaagagcagcggtgaagtcctcaag
aagaaaccaaaatgtttgagtaaaggtatgaacgctatcgtggaggtccagacccagcgg
ccggtgtcattagagctgtacaaggactacaaggagctgggtcgcttcatgctgcgatac
gtgggctccaccattgctgcaggggtcgtcaccgagatcaaagactga
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