Hippoglossus stenolepis (Pacific halibut): 118099444
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Entry
118099444 CDS
T08308
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03008
Ribosome biogenesis in eukaryotes
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118099444 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
118099444 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118099444 (xrn2)
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118099444 (xrn2)
03009 Ribosome biogenesis [BR:
hsp03009
]
118099444 (xrn2)
03016 Transfer RNA biogenesis [BR:
hsp03016
]
118099444 (xrn2)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118099444 (xrn2)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
118099444 (xrn2)
Ribosome biogenesis [BR:
hsp03009
]
Eukaryotic type
Pre-60S particles
RNases
118099444 (xrn2)
Transfer RNA biogenesis [BR:
hsp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118099444 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
118099444
NCBI-ProteinID:
XP_034999959
LinkDB
All DBs
Position
20:complement(20049377..20077193)
Genome browser
AA seq
1006 aa
AA seq
DB search
MGVPAFFRWLSRKYASIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTDEKNRMREEIIERGGYLPAEEIKERFDSNCITPGTEFMDNLAQCLRYYVAD
RLSNDPGWKNVTVILSDASVPGEGEHKIMDYIRKQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCNQMGHEIKDCQGAAREKQGQHDEFADTMPTSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVQKTGGYLTENGYVKLDRVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KRKRMKAEKRGPAYLTTGQFAPQALGRRDRPDAVQNARHQAYDMRMQPNKDAAQSLKAMM
KNGGNSSAGPSDGDGRGVKRKAEDSDSEPEPEDDVRLWEDGWKQRYYKTKFDVDVSDDDF
RKRVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKDMFKDFENDTKPFKP
LEQLMGVFPAASGNFLPQTWRNLMSSPDSSIIDFYPDDFAIDLNGKKYAWQGVALLPFVD
ERRLRAALADVYPDLTPEEVKRNSLGSDVLFLSKSHPLFDFIHELYRTEVQGGTEIPAEL
CHGIQGELNLDDNPILPDSTVTSPIPTLRDISVNSSIGVKFKDPQFAADFVFKAVLLPEA
KMPNKVLKPGDWERGNREPWRPQLGFNQNRQQAHLDQSSFRSLGHSMNRNQRGGGQYSSA
APPNSYQGNYRAPHSGGHQPFQHSRQNSLLGAPPSSYQSQYPRNQQQQQQSYGGGGGHGW
DRTMQSQQSAYQQNMNRGRGGSGGGSSSGGGTGGSGGGGGTGGSSQGSYQQRYDNRREDW
NDRRDDRRDDRRDNWGGAQQQQQQQQGQGSGRGYPPPPPARRQNWN
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttcagatggctgagccggaaatacgcgtcgatcattgttcac
tgtgtggaggagaaggggaaagaatgtaacggcgtccgtattcctgtggacacgaccaag
cccaaccccaatgaggtggaatttgacaacttgtacttggacatgaacgggatcattcac
ccatgtacacatccagaagacaaacctgctcccaaaaatgaagatgagatgatggtcgcc
attttcgagtacatcgaccgcctgtttaatatcgtgcggccccggagagttctttacatg
gccatcgatggagtggctccacgtgccaaaatgaaccagcagcgctctcggcgtttccgt
gcctccaaagaaggagtggagttgaccgatgagaagaatcgcatgagggaggagatcatc
gagagaggtggttatcttccagctgaggagattaaggagagatttgacagcaactgcatc
accccaggaacagagttcatggacaacctggcgcagtgtctccgatactacgtcgcagac
agactcagcaatgatccaggatggaagaacgtcacagtcatcttgtctgatgccagtgtt
ccaggtgaaggtgaacacaagattatggactacatcaggaaacagagagctcaaccccac
cacgaccccaacacacaccactgcctgtgtggagctgatgctgacctgattatgttgggc
ctggccacacacgagccaaacttcaccatcatcagagaggagttcaaacccaacaagccg
cggccctgtgcactctgcaatcagatgggacacgaaatcaaagactgtcagggggcggcc
agagagaaacagggacagcacgatgagttcgctgacactatgccgacgtctgagcaggag
ttcatcttcatcagactgtgtgtgctgcgggagtacctcgccagagagctgaccatggcc
agcctgccatttcccttcgactttgagaggagcgtcgacgactgggttttcatgtgcttc
tttgttggtaacgactttctgcctcatctgccgtccttagaaatcagggagggagcaata
gatcggctggtcggcatctacaaagacgttgtgcaaaaaacaggaggctacctgacggag
aacggctatgtcaagctggaccgagtagagctgatcatgcaggcggtgggcgttgccgag
gacaacatcttcaagaagcgcaaagaggacgatgaaggcttcaagagaagaatgaaagag
aaacgaaagaggatgaaggcggagaagcgcggtcccgcctacctgaccactggtcagttt
gccccacaggccctggggcgaagagaccgacctgatgccgtccaaaacgcacgccaccag
gcctacgacatgagaatgcaacccaacaaggatgctgctcagtctctgaaggccatgatg
aagaatggaggcaactcttctgcaggacccagtgacggagacggcaggggagtgaagagg
aaagccgaggacagcgacagcgagccggagcctgaagacgacgtcaggttgtgggaggac
ggctggaagcagagatactacaagaccaagttcgacgtggacgtttcagatgacgatttc
aggaagagggtggtgaagtcgtacgtggagggtctctgctgggtgctgcgctattactac
cagggctgtgcctcctggaagtggtacttccccttccattacgccccgttcgcctccgac
ttcaaagacatcaaagatatgtttaaggatttcgagaacgacaccaaaccgtttaagcca
ctggaacaactgatgggagtgtttcctgctgccagcggcaacttcctgcctcagacatgg
cggaacctcatgagcagcccggattcttccatcattgacttctaccccgacgacttcgcc
attgatctcaacggcaagaaatacgcttggcaaggtgtggccttgttaccttttgtggat
gaacgtcggttgagggcggctctggctgacgtctacccagacctcacacccgaggaagtg
aaaagaaacagtctgggaagcgacgtgttgtttctcagcaaatctcacccgctgttcgac
ttcatccatgaactctaccgcactgaagttcaggggggcactgagatccctgcagagctg
tgtcatgggatccaaggtgaattaaatcttgatgacaacccgattctcccagatagcaca
gtgacgtcgcccatcccgacgctgcgggacatttcagtgaacagctcgatcggagtgaag
ttcaaggatccgcagttcgcagctgacttcgtgttcaaggcggttctcctgcctgaagcc
aagatgcccaataaggtcctgaaaccaggcgactgggagagaggaaacagggaaccatgg
cgaccgcagctcggcttcaaccaaaacaggcagcaggctcacctggaccagtcgtccttc
agatctctgggtcacagcatgaacagaaaccagcgcggtggaggacagtacagcagcgcg
gcgccacccaacagctaccaaggaaactaccgtgctccacacagcggcggccatcagcct
ttccaacattccaggcagaacagtttgctgggagcgcctccctcctcgtaccagtcccag
tatccaaggaaccagcagcagcagcagcagtcgtacgggggaggcgggggtcatggctgg
gatcggaccatgcaatcgcagcagtcggcgtatcagcagaacatgaaccgcgggcgggga
ggcagcggcggtggcagcagcagcggcggtggaaccgggggcagcggcggcggcggtgga
accggcggcagcagccagggcagctaccagcagcgctacgataatcgcagagaggactgg
aacgaccgcagggacgatcgtagggacgatcgcagggacaactgggggggggcgcagcag
cagcagcagcagcagcagggccaaggctccggcagaggttaccctcctcctcctcccgcc
aggagacagaactggaattag
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integrated database retrieval system
