Hippoglossus stenolepis (Pacific halibut): 118099487
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Entry
118099487 CDS
T08308
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118099487 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118099487 (cpsf2)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118099487 (cpsf2)
U7-dependent histone pre-mRNA processing factors
118099487 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
PRP9_N
Motif
Other DBs
NCBI-GeneID:
118099487
NCBI-ProteinID:
XP_035000029
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Position
20:14571593..14579420
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFKLFTLDDVD
CAFDKIQQLKYSQIVHLKGKGHGLSITPLSAGHMIGGTIWKIVKDEEEEIIYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELEEFLEKDKQKKEAAKKLEQAKEVDVDSS
DESDLDDDLDQPAVVKNKHHDLMMKSEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKNKLESGMTNGDEPMDQDLSVVPTKCISSVENLEIKARITYID
YEGRSDGDSIKKIINQMKPRQLAIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKEDVEEGD
LAMDVVPDLGIDINATAVAAQRALKSLFGEDEKELSEESDVIPMLEPLPPPEIAGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgaccgccgtgtcgggggtccaggaggagtccgccctctgt
tacctgctgcaggtggatgagttccgcttcctcctggactgtggctgggatgagaacttc
tccatggacatcatcgatgctatgaaacgatatgttcatcaggtcgatgctgtgctcctc
tcccaccctgaccccttacacctgggagccctgccctacgctgtgggcaaactgggtcta
aactgtacaatttatgccacaattcctgtttataagatgggtcagatgttcatgtatgat
ctttatcagtctcgaaacaacagtgaagatttcaagctcttcactctcgacgatgtggac
tgtgcttttgataaaattcagcagctgaaatactctcagattgtccacctgaaaggcaaa
ggacatggtctctccatcacgccgctttcggccggtcacatgataggaggcaccatttgg
aaaattgtgaaagacgaggaggaggagattatttacgccgtggacttcaaccacaagaga
gagatccacctgaatggctgcacactggagagcatcagtcgtccttccttacttattaca
gactccttcaatgccacatatgtgcagccacgtcgtaaacaaagagatgagcagctcctt
actaatgtgatggagaccctccgaggtgacggtaatgtcctgattgctgtggatacagca
gggcgcgtgttggagttggctcagctcctggaccagatctggaggacaaaggatgctggg
ctgggggtttacccactcgctctgctaaacaatgtcagctataacgtggtggagttttcc
aagtcccaggtggagtggatgagtgacaaactcatgaggtgttttgaggacaagagaaac
aaccccttccagtttcgtcacctgaccttgtgccacagtctggcagacctggcccgggtg
cccagccccaaggtggtgctctgcagccagccagacctcgagtcaggcttttctcgagag
ctcttcatccagtggtgccaagatgccaaaaactccatcatcctgacctaccgcactaca
cctggaaccctggcccgttacctcatcgacaaccctggagagaagatgctggatctggag
gtgaggaaaagagtgaagctcgaaggcaaggagctggaagaattcctggaaaaggacaaa
caaaagaaagaagcagctaaaaaacttgaacaagcaaaagaggtggacgtggactccagc
gatgagagtgacttggacgatgatctggaccagcctgcagtagtaaaaaacaaacaccat
gacttgatgatgaagagcgaggggagccgcaaaggcagtttcttcaaacaagccaaaaaa
tcgtatccaatgttccccacgcacgaggaaaggatcaaatgggacgagtatggggaaatc
atcaggctagaggagtttctggttcccgaactgcaagccacagaggaggagaaaaacaaa
cttgaatctggcatgaccaacggtgatgaacctatggaccaggatctctctgtcgttccc
accaaatgcatctccagtgtagaaaacctcgaaattaaagcgagaataacatacatagac
tacgaaggtcgctctgacggcgactccatcaagaagattattaatcagatgaagcccagg
cagctcgccatcgttcacgggccaccagaagccagtctggacttggctgagtcttgcaag
gctttcagcaaggacatcaaggtctacacacccaaactgcaggagaccatagacgccacc
agtgagacacacatctaccaggtgcggttgaaggactccttggtgagctctctgcagttc
tgcaaagccaaggacacggagctggcatggattgatggcgtgctggacatgcgcgtggtg
aaggtggacaccggcgtgatgctcgaggagggagtgaaggaggatgtcgaggagggcgac
ctggccatggacgtcgtccccgatctcggcatcgacatcaacgccacagcggtggccgca
cagcgagccctcaagagcctgtttggagaggacgagaaggagctgtctgaagagagtgac
gtgattcccatgttagagccgctgcctccacccgagattgctgggcatcagtcggtgttc
atcaacgagccgcgcctgtctgacttcaagcaggtcctgctgagagagggcatccaggcc
gagtttgtgggaggagttctggtgtgcaacaacatggtggccgtccgcaggacggaggcc
ggacgcatcgggctggaaggctgcctgtgtgacgactactacaagatccgggagctgctg
tatcagcagtacgccgtggtatag
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