Hippoglossus stenolepis (Pacific halibut): 118099515
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Entry
118099515 CDS
T08308
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp00100
Steroid biosynthesis
hsp01100
Metabolic pathways
Module
hsp_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
118099515 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
hsp01006
]
118099515 (fdft1)
Enzymes [BR:
hsp01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
118099515 (fdft1)
Prenyltransferases [BR:
hsp01006
]
Terpene biosynthesis
Squalene/phytoene synthase
118099515 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
118099515
NCBI-ProteinID:
XP_035000063
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All DBs
Position
20:11950244..11957715
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AA seq
458 aa
AA seq
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MAGAGYKCPVSLAVFKRSLSVAPRGCGGSAPRSLLPGWRLGERGLQEAARPSSAVRAASF
YRHSAFFCLSCQESMSDSLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDT
VEDDMSIPLDKKVPMLNNFHTFLYQDEWCFNESQEKDRQVLEDFPTISLEFRNLAQEYRD
VISDICQRMGVGMAEFLEKKVGSMKEWDQYCHYVAGLVGIGLSQLFSASQLEDPEVGQDT
ELANSMGLFLQKTNIIRDYLEDTQVGRAFWPQEAWSQFAVRLEDLAQPDKLESALSCLNL
LVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSKCYNNPMVFQGVVKIRKGQA
VTLMMEATNMRAVHTIISQHSQEILQKVSLTDPSRDKTLHILALIREKSALSQSTLPSRT
HHLSPMYLSAAMLLAALSWQYLSTTAAQAQGTGNMQGQ
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggccggagctggctacaagtgtcccgtctccctggccgtgttcaagcgctctctgtcg
gtggcgccgcgcggctgcggtgggtccgctccgcggtccctgctgccgggctggaggctc
ggggagcgcggcctgcaggaggccgcccgcccctccagcgccgtgagagccgccagcttt
taccgacacagcgccttcttctgtctctcctgccaggagtccatgagcgacagtctgcgg
acctgctacctgtacctgaaccaaaccagccggagcttcgcggccgtgatccaggcgctg
gacggggagctgagacatgcagtttgtattttctacttggtgctgcgagcgctggacaca
gtggaagatgacatgagcatccccctggacaagaaagtccccatgctgaataatttccac
accttcctgtaccaggacgagtggtgcttcaacgagagccaggagaaagatcggcaggtc
ctggaggatttccccacgatatcactggaattcagaaaccttgctcaggaatacagagac
gtcatctccgatatctgccaacgtatgggagtgggaatggccgagttcctggagaagaaa
gtgggatccatgaaggagtgggaccagtattgccactatgtggccgggctggtcggcatt
ggcctgtctcagctcttctctgcgtcccagctggaggaccctgaggtggggcaggacacc
gagctggccaactccatgggcctgttcctccagaagaccaacatcatccgggactatctg
gaggacacgcaagtgggacgagccttctggccacaagaggcttggagtcagtttgccgtt
cgtcttgaggacctggcccagccggacaagctggagtcggctctgtcgtgtctcaacctg
ctggtcaccgatgccctgcgacacgtcccagatgttatcgcctacctgtcgcggctgcgc
aaccagagcgtcttcaatttctgtgctattccacaggtgatggcgatagctacattatca
aaatgctacaacaaccccatggtgttccagggagtggtaaagatcaggaagggacaggct
gtcaccctcatgatggaggccaccaacatgagagctgtgcacaccatcatcagccagcac
agccaggagatcttacagaaggtctccctcaccgacccgtcacgggacaagaccctgcac
atcctggctctgatccgagagaagtccgcgctgtcgcagtccaccctcccctccaggacc
caccacctgtcgcctatgtacctgtccgccgccatgctgctggccgccctcagctggcag
tacctcagcaccactgcggcacaggcccagggcaccggcaacatgcagggacagtga
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