Hippoglossus stenolepis (Pacific halibut): 118099700
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Entry
118099700 CDS
T08308
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04140
Autophagy - animal
hsp04148
Efferocytosis
hsp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118099700 (vps18)
04148 Efferocytosis
118099700 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
118099700 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118099700 (vps18)
Membrane trafficking [BR:
hsp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118099700 (vps18)
Hops complex
118099700 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf_RING_Vps8
zf-RING_Vps41
zf-RING_16
DUF2175
zf-RING_2
zf-RING_11
DUF1664
Apolipoprotein
zf-C3HC4_2
zf-RING_UBOX
LETM1_C
DUF5600
Sec8_N
zf-rbx1
zf-ANAPC11
zf-RING_5
DUF4446
Motif
Other DBs
NCBI-GeneID:
118099700
NCBI-ProteinID:
XP_035000305
LinkDB
All DBs
Position
20:complement(9039227..9044825)
Genome browser
AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNTRQSAQQHSRLSSANIGITHSGFVNVRLEEEKPIFNKQRIDFTPPEK
INHLAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDDSKVHKLFLDPTGSHVLISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGNETSTGPILVGTGQGIIFEAEISA
SEGSLFNTNPDQYFRQVHSLEEDGKPAPICCLEVERGLENKYFIIATTRKRLFQFVGKIP
EGSEQLGFSSIFNQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWDYTPDIDLTLKKPISIVLTQFHFLLLLHDRVKAICTLNGQVVYE
DVFPDKFGALKRMIKDPVGGLVWIYTERAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSERTQITLLVTWLAELYLNSLGQLESDGNSIIFQETRDEFRNFLSCSKHKECLF
NNRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDYSAALDVLSKHCDEKLFYK
FSPVLMQHIPKKVVDAWIQMGKKLEPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELN
VTEEAIHNYLLSLYAKYKPDSLLAYLEQAGKHASEIHYDLKYALRLCAEHGYLRACVLVY
RIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCL
SSCDLLKIEDILPFFPDFVTIDHFKEAICSSLQEYNQHIEELKQEMEEATESAKRIREDI
QEMRNKYGVVDSQEKCAACDFPLLNRQFYLFLCGHMFHYDCLFQEVTPHMSTYKQGRLEE
LQKKLSATTQTSKSRQRAATKDEGDTSSLGKGNAGTSREQIKSDIDDIIASECVYCGELM
IKSIDKPFIDPLKFEEEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaattctcgacgagtacgaggactcgcagaacacgaggcagagtgcgcagcag
cacagccgcctgtcaagtgccaacatcgggataacgcactcaggctttgtgaacgtgaga
ctggaggaagagaagccgatattcaacaagcagaggatcgacttcacacccccggagaag
ataaaccatcttgcagtctgcaacaatcagctgtgcatgagtctggggaaggacaccctg
ctgaggattgacttggccaagccagatcagcctaatcagatcgaattgggaaggaaagac
gacagcaaagtgcacaaactgttcctggaccccacaggctcccatgtgctgatcagcctg
agcaccagtgagtgtctgtacctcaacaggaacacgcagaaggtgcgcagtctgtcccgc
tggagaggccacctcattgagagcgttggctggaacaagctgctgggcaacgagaccagc
acgggacccatcctggttggcaccggtcaaggcatcatctttgaggctgagatatccgca
agcgagggcagcctgttcaacaccaatccagaccagtacttcagacaggtccactctctg
gaggaggatgggaagccagcacccatctgctgcctggaggtggagcgcggcctggagaac
aagtacttcatcatcgccaccacacgcaaacgcctgttccagtttgtgggtaagataccc
gaggggtcagagcagctgggcttcagctccatcttcaaccagaaccaggacctgctgccc
agtttccaggagttcccggccaacatgggctacagcgagatcacgttctacacctcgaag
ctgcgcacttcccccaaggcgtttgcctggatgatgggtaatggagttctttatggtcag
ctggactatgtgaggcctgattccctgctaagtgatgtgcaggtatgggactacaccccg
gacattgaccttactctcaagaagcccatctccattgtgctgacacagttccacttcctg
ttgttgctccatgaccgagtcaaggccatctgcactctgaatggacaggttgtttacgag
gatgtgttcccagataaatttggcgccctcaagaggatgattaaggacccagttggtggg
ttggtgtggatctacaccgagcgggcagtcttccgctatcacatccagcgcgaggccagg
gacgtctggcagatgtacatgagcatgaataaatttgatctggccaaggagtactgccgt
gaccgacctgagtgcatggacatggtactggcgaaggaggctgagcactgcttccagaat
aagcgatacctggagagcgccaagtgctatgcactgacacagaactactttgaggaaata
gcgctcaagttcatcgaagccaaacaagaggaagccttgaaggagttcttactgaagaaa
ctaaataacttgaaacagagtgagagaacgcagatcaccttgctggtcacctggctagca
gagctctatctgaacagtctcggccagctggagagtgacggtaacagcatcatcttccag
gagacccgtgatgagttccgcaacttcctcagctgctccaagcacaaggagtgcctgttc
aacaaccgcagcaccatctatgacctgctggccagccacggcaacgtggacgacatggtt
tacttctccgtcgtcatgcaggactacgagagggtgatttcccactactgccaacacgat
gactacagcgccgctctggacgtgctctccaagcactgtgacgagaagctcttttacaag
ttctcccccgtcctcatgcagcacattcccaaaaaagtggtcgacgcgtggatccagatg
ggcaagaagctggagccaaagaaactcatcccggcccttatgaactacagccagatgggc
agcacccagcagatcagtgaaaccattcgctacatggagttctgcgtctacgagctcaat
gtgacagaggaggcgatccacaactacctgctgtcgctctatgccaagtacaagccggac
tctctgctggcgtacctggagcaggcaggtaaacacgcctcagagatacactatgacctg
aagtatgctctcaggttgtgcgctgaacatggctacctccgcgcctgtgtcctggtttat
aggattatggaactgtatgaggaggcagtggatctcgctttacaagttgatgtagacctg
gccaagtcatgcgctgacctgcctgaggatgacgaggaactgaggaaaaagctttggctg
aagatcgcccggcacgttgtccaagaggagaaagacgtgaagaaggccatgaactgcctg
tccagctgcgacctgctgaagatcgaagacatcctgcccttcttcccggactttgtcacc
attgaccactttaaggaggccatctgcagctccctgcaggagtacaaccagcacatcgag
gagctgaagcaggaaatggaggaggctacggaaagcgccaagcgaataagagaagacatc
caagaaatgaggaacaaatatggtgtggttgattcccaagagaaatgtgctgcctgtgac
ttcccgttgctcaacaggcagttctatctattcttgtgtggacacatgttccactatgac
tgcctcttccaggaagtgactcctcatatgtcgacctacaagcagggtcgcctggaggag
cttcagaaaaagctgtccgcaaccacgcaaacgtccaagtctcgccagcgcgcggcgacc
aaggacgagggtgacacttccagcctgggaaagggcaatgcgggcacgagccgggagcag
ataaaatcagacattgacgacatcattgcgtccgagtgcgtgtactgcggcgaactgatg
atcaaatccatcgacaagcctttcatcgacccacttaaatttgaggaggaaaagtccagc
tggctatga
DBGET
integrated database retrieval system
