Hippoglossus stenolepis (Pacific halibut): 118100203
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Entry
118100203 CDS
T08308
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hsp03016
]
118100203 (trub1)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
118100203 (trub1)
Transfer RNA biogenesis [BR:
hsp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
118100203 (trub1)
Prokaryotic type
118100203 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
GAIN_A
Pus10_C
Motif
Other DBs
NCBI-GeneID:
118100203
NCBI-ProteinID:
XP_035000919
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All DBs
Position
21:255120..266411
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AA seq
285 aa
AA seq
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MAGNMSSSFAPITSSLSKLQSLNGLFAIYKKQGPTSAELLNTFKEALLKEAGVQNPNPRK
RKKQSLKLGHGGTLDSAASGVLVVGVGYGTKKLSTMLAGSKKYVAVGELGKATDTLDATG
KVILEKDFEHITRQDFEEKLKSFTGDIMQVPPLYSALKKDGQRLSVLLKKGHKVEAKPAR
PVTVYNLTLQEFKPPFFTLDVECGGGFYVRSLVDDLGKALSSCAHVKNLVRTKQGQFTLE
EHALHEEQWTLEHVLHSLQPCTESEQGTKPSDQHNVNRTQANNMT
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaacatgagtagcagctttgcccctataactagttctctgtctaaattgcag
tctctgaatgggctctttgccatttataaaaaacaagggcctacgtcagcagaattgttg
aatacgttcaaagaggctctgctcaaagaagccggtgtacaaaacccaaatccgcgaaag
agaaagaagcagagcctgaagctggggcatggagggactctggacagtgctgccagtgga
gtgttagttgttggtgttggatatggcacaaaaaagctcagtaccatgttagcgggttca
aagaaatatgttgctgtgggggagctgggaaaagcaacagacactcttgatgctactggt
aaagtgattttagagaaagactttgaacacattaccaggcaggactttgaggagaagctg
aaatccttcactggtgacatcatgcaagttcctccactctactctgctctgaaaaaggat
ggccagcgtctgtctgtcctgctgaaaaaaggtcacaaggttgaggccaaacctgctaga
ccagtcactgtgtacaacctgactctgcaggagttcaagcctcctttcttcactctagat
gttgaatgtggtgggggattttatgtcagaagcttggtggatgacctggggaaagctctg
tcatcctgtgctcatgtgaagaatctggtgcggaccaagcagggtcagttcaccctggag
gagcatgccttacacgaggagcagtggacactggagcatgtcctgcactctctgcaaccc
tgtacagagtcggagcagggtactaaaccatcagatcaacacaatgtgaacaggacccag
gctaataatatgacatga
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