Hippoglossus stenolepis (Pacific halibut): 118100354
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Entry
118100354 CDS
T08308
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118100354 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118100354 (msh2)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118100354 (msh2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Levi_coat
Motif
Other DBs
NCBI-GeneID:
118100354
NCBI-ProteinID:
XP_035001224
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Position
21:11216452..11226984
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AA seq
932 aa
AA seq
DB search
MAVQPKHNLSMDSAAEHGFLSFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKLLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWKIEYKA
SPGNLTQFEEILFGGGTGAVGCAGVVAVRISTGADGQRVVGVGYVDAAQRTMGVCEFADN
EIFSNLESMLVQLGPKECLLAQGDGNGDGSKLRQVVERGGVLVSDRKRAEFSSKDMVQDL
NRLLRAKRGETTASSTLPELEKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYMR
LDNAAVNALNLFQASPDDTSRSHSLAGLLNKCRTPQGQRLVNQWIKQPLMDRTKIEERLD
LVESFVCDSELRHTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVTQIPALAAAI
ERYSGSYQVLLEAVFVSPLRDLHSDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDTLDKSMQTVLNSAARELGLDAGKTVKLESNAVLGFYLRVTCKVEKNLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIASGYVDPLQTLSDVIAQ
LDAVASFAVASVSAPVPYVRPRLLADGCRRMELLQARHPCMETDPDTAFIPNDITFVHGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVVDSVLARVGAGDCQVKG
VSTFMSEMLEIAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGGFCLFA
THFHELTALAAHEPTVHNLHVTALTSHDTLTMLYRVKPGVCDQSFGIHVAEMASFPPSVV
AMAKEKAEELEEFQEPAGGTSTQEEEPEAKRRLTDKQVGENLILNFLEKAKSLPATMSEA
EVKSELRRMKQELAAKNNTYITDILSRCVKTV
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcacaacttgtccatggacagcgcggccgaacatggcttcctc
agcttcatcttctccatgccggagaaaccggacaccacgttcaggatattcgaccgcaac
gactactacaccgtgcacgggaaagacgccatattcgcggcgaaggaggttttcaagact
aacggggtcatcaagcttctgggctcagggagccgtaagctggagagcgttgtcctgagc
aagctgaacttcgaggccttcgtgaaagacctgctgctggtgcggcagtacagagtggag
gtgtacaggaaccacagcaagagcagcaaggagcacgactggaagattgagtacaaggcc
tctccgggaaacctgactcagttcgaggagattctgttcggtggtggaaccggagcggtg
ggctgcgcgggagtcgtagccgtgcgcatctccacaggagctgatggacagcgcgtggtc
ggtgtcggctatgtggacgccgcgcagaggaccatgggagtgtgcgagtttgcagacaac
gagatcttctccaacctggagtccatgctcgtccagctcggccccaaagagtgtctctta
gcccagggggacggcaacggtgacggcagcaaactacgacaggtggtggagcgtggtggc
gtgctggtctctgacaggaagagggcagagttcagtagtaaggacatggtccaggatctc
aacaggctgctgcgagccaagagaggagagacgacagccagcagcacgctgcccgagctg
gagaagcaggtggcgatgtcctgcctggctgcagtagtgcgtttcctcgaactgctctcc
gacgagtccaacttcaactccttcagtctgaccactctggacctgggtcagtacatgagg
ctggacaatgctgcagtgaacgctctcaacctcttccaggcttcacctgacgacaccagc
agaagtcactcgctggccggtctgctaaacaagtgccggacaccgcagggccagcgtctc
gtcaaccagtggatcaaacagcctcttatggaccgaaccaaaatagaggagaggttggac
ttggtggagagtttcgtgtgtgactctgagctcaggcacacctgccaggaggacttgctg
cggcgctttcccgatctccaccgtctggccaagaagttccaccgtcacactgctacgctg
caggactgttaccgcgtctaccaggctgtgacccagatccccgcccttgccgcggccatc
gagagatactcaggcagctaccaggttctgttggaggccgtgttcgtctcccctctcaga
gacctgcactccgactttgtcaaatatcaggagatgatcgaaaccactctggacatgaac
cagatcgaccaccacgaattcctggtgaaggcgtcgttcgatccggtgttgagtgagctg
agagaaaagatggacacgcttgataagagcatgcagacagtgctgaacagcgcggcgaga
gaactaggtctagacgccggtaagacggtgaaattggagtcgaacgcggtgctgggcttt
tacctgagagtcacctgcaaggtggagaagaatctgaggaacaacaagaaattcaccaca
ctggacgtccagaagaacggagtgcgtttcaccaacagcaaactgagctctctgaatgag
gagtacaccaagagcagggaggagtacgaggaggcgcagaacgccatcgtcaaagagatc
atcagcatcgcctcaggttacgtggaccccctccagacgctgagcgacgtgatagcgcag
ctggacgcagtggcgagcttcgcggtggcgtccgtctccgctcctgtgccgtacgtgcgg
cctcgcctcttggctgacggctgcaggcgcatggagctgctgcaggccagacacccctgc
atggagacagacccggacacggccttcatacccaacgatatcaccttcgtccacggagag
aagaacttttatattataacaggaccgaacatgggaggcaagtcgacgtttatccgtcag
gtgggtgtgatcgccctcatggctcagatcggctgctttgtgccgtgcgagaaggcggag
ctgagcgtggtcgacagcgtcctggccagggtgggagcgggggactgccaggtgaaaggc
gtgtccaccttcatgtccgagatgttggaaatcgccgccattctccgctcggccactgag
aactctctgatcataatcgacgagcttggcagaggcacgtccacgtacgacggcttcggg
ctcgcctgggccatcagcgaacacattgcctccaaaatcggcggcttctgcctgtttgcc
acgcacttccacgagctgacggcgctcgcagcacatgagcccaccgttcacaacctgcac
gtcacggccctgacctctcatgacacgctcaccatgctgtacagagtcaaaccaggtgtg
tgcgaccagagtttcgggatccacgtcgccgagatggcctctttcccgccatctgtggtt
gccatggcgaaggagaaggccgaggagctggaggagttccaggaacctgcgggtgggacg
tcgacgcaggaggaagagcccgaggccaagagacgactgacggacaaacaagtgggggaa
aacctgatcctgaacttcctggagaaggcgaagtcacttcctgccaccatgagcgaggcg
gaggtgaagtcggagctgaggagaatgaagcaggagctggcagctaagaacaacacgtac
atcacagacatcctttcccgatgcgttaaaaccgtttga
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