Hippoglossus stenolepis (Pacific halibut): 118100367
Help
Entry
118100367 CDS
T08308
Symbol
si:dkey-92j12.5
Name
(RefSeq) multiple PDZ domain protein isoform X1
KO
K06095
multiple PDZ domain protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118100367 (si:dkey-92j12.5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
L27_1
PilN_bio_d
Motif
Other DBs
NCBI-GeneID:
118100367
NCBI-ProteinID:
XP_047194013
LinkDB
All DBs
Position
2:complement(16090066..16130185)
Genome browser
AA seq
1864 aa
AA seq
DB search
MEIMDTQHALEAVGRLQAKLKERGEAPTQEKLSLLKTVLQSPLFHHILSLQQAKRKPLAK
GKGISKSVSMNCGPCPGVPVGLKTLCHSDSYTWAMENRSSHREGSMSSLGSQDLSFSDIY
PNNCTHTESQYCTPPRISRTMSMGRNLAAIAHERRHVEMIELTNDGKGLGFGIIGGRSTG
VMVKTILPGGAAGRDKRLRSGDQILRIGDTDLAGMNSEQVAQVLRNAGTKVKLLIARDIT
KDNHLSSPALSQDSLDGKLNDFNDEYEFSVQFTKNSRGLGFTISSYIGDLNSVYSAGVMV
KSIVKGSAIDQDGRIHIGDIILSVDGVSMHGCSEQRAMEVLRRTGPLVRLRLLRKSVRLS
HILPPVPPLQPLRHSHSFHEGNPYRVALNRIQETGICSLREISRRAAYANRRPRHDFRNG
GKLMPAEEEYLRKRWQHAVGPRYEVIVCQLERFSETSGLGISLEARAGHHYLCSVLPEGP
IGQSDKIFTGDQILEVNGIPLIGETHKEVVNLLKELPIHVCLVCSRVVPPSIPNSDEEDD
NEVHLTLKELLAEFNDKLDQGCVIPCPTAEDITKRGVPPMSPPLAMWEREAQVVELEKGE
SGLGFSILDYQDPEDVTKTVLVIRSLVPGGVADQDGRLLPGDRLMFVNDTDLEGSSLDYA
VYVLKSTGYGPVRVGVAKPLPLELCGGLTPISERSVRVSCDDTENHTQAGLLAEAAEAFA
NTYHSEDNSFGQQCYKRTENQPRYRFGIMDNDRQQAPPPPPRTSFEKTITVVRGNRSLGM
SVSAIKDGSGMLVRSVVQGGSVSQDGRLGVGDAILALNGEPTSNLTNAKARATLRRHSVI
GPEMSVTYVPAQQVDEHRIRLCLPPLASIEADSASSSPTPPTPSPEPASAPSRPLSPVKA
PAPTPASSTRTPSASVRFKTAAPHPASVRVSASLKAPFKGPAVVPTITPAPDSSVQLTRA
PGQSLGISIMGGRGMGRRLSSGEMMRGVFIKHISPDSPAADNGTLRTGDRILEVCGVDLR
DASHEQAVEAIRRAGDTVVFLVQSGQHRSQSPILTNHERQTPMSQPNSHGNKEAESCGGL
FLSLSPSNPFIPTPFKVPSPASERKDRRSTVTVTAPIAAAAAAADGGDRGRKKMLQRYGS
LSGKLHMIELEKDPAAHGLGISLTGNKDGSRARMSVFVADIDPQGPAGLDGRIRVGDELL
EINGQILYGRSHQNASTIINSAPSKVKIILIRNKAQSQKAQESRSECEDTVDSQIDSAER
GALSSDIQHVILPQDHAGLGLCLAEDDSKDGVVVRSLVQHGTASKDGRIMTGDTIIAVGD
EHVAGMSVEKVSSLILKHRVTVKLSISRSSSLSPSSSTQPLPSPLSQPCSTSPVPSQTLP
VSSSSSSSLKTTHTSTAGQSDWLGAAPTTSDPVSCPVVAGRETTIEICKGSVGLGLSIVG
GCDTLLGAVVIHEVNDGGAAQRDGRLQAGDQILEVNGIDLRQATHDEAIGVLRLTTQRVC
LRVFRHQEAYREEDLWDVFSMELRPRPGEELGFTTVGKSNDTGIFVSDIIRGGVADSDGS
LLLGDQILSINEEDVRAASQEHAQKLLQSYSGVVHLEVARFKAGVQYSQRSQSEDSDCST
LTPSSGGDASAGHQRESNNKAGSCSEWQSAFQDFPDVRKVIIQKDPCDSLGISVAGGVGS
PHGNVPLFIATMDTNGLAAKTQLLQTGDKLLSINDVSTEGMTHVQAGALLKNATGTVSLQ
VAEGSGVCSTKDDSDARARSSGQPSSLPCSHNNLCARMYKTITLERGSSGLGFSIVGGFG
SPHGDLPIYIKTVFNKGAAIADGRLKRGDQIIAVNGHCLEGVTHAEAVDILKKTKGSVVL
TVLS
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcatggatacgcagcatgccttggaggctgtggggagactacaagctaaactg
aaggagcggggggaggcccccacacaggagaaactctccctgctgaagaccgtcctgcag
agccccctgttccaccacatactcagcttacagcaagctaagcggaagcccctggcgaag
gggaagggcatttccaaatctgtatccatgaactgtggaccatgcccaggcgtaccagtg
gggttgaagactctgtgtcacagtgactcttacacatgggccatggagaacagatcctcc
cacagggagggcagcatgtcttccctgggctcgcaggatctgtccttctcggacatctat
cccaacaactgcactcacaccgaatcgcagtactgcactccccctcggatctcccgcacc
atgtccatgggcagaaacctggctgctattgctcacgagaggcgtcatgtggagatgatt
gagctgaccaatgacgggaagggccttggctttggcatcataggagggcggagcacagga
gttatggtcaagaccatcctacctggaggagctgccggccgggataaacgcctgcgtagt
ggagatcagatcctgcgcatcggagacacagacctggcgggcatgaacagtgagcaggtg
gcacaggtgctgcgaaatgctggtaccaaggtgaagctgctcattgccagggatatcacc
aaggacaaccacctatcctcacctgccctcagccaggacagcttggatggcaagctcaat
gacttcaatgatgagtatgagttcagtgtgcagttcactaaaaacagccggggcctggga
ttcaccatctctagctacataggtgacctcaattcagtgtacagtgccggtgtgatggtg
aagagcattgtgaaaggcagcgctattgatcaagatggacgcatccacattggagatatt
atactatctgtagatggcgtgagcatgcatggctgcagtgagcagagggcaatggaggtg
ctgaggaggacggggcccctggtcagactgaggttgctgaggaaatccgtccgtctgagt
cacatcctgccgccggttcctcccctgcagccgctccgacactcccacagcttccacgag
gggaatccctacagagtggccctcaacaggattcaagagacaggaatctgctccctgcgt
gagatctcccggcgagcagcatacgccaacagacgaccccgacatgatttcagaaatggc
gggaaactgatgccagctgaagaggagtacctgaggaagaggtggcagcatgcggttgga
ccccgatatgaagttattgtgtgtcagctggagcggttcagcgagacaagtggactgggc
atcagcctggaggctcgggcaggacatcattacctgtgctccgtcttacctgaggggccc
attggccaaagtgataagatcttcactggagaccagatattggaggtgaatgggatccct
ctcattggagagacacataaggaggtggtcaatcttctgaaggagctgccgatccatgta
tgtctggtgtgctctcgagttgtccccccttcaattccaaacagtgatgaggaagatgat
aatgaagtccacctcaccctgaaagagctgctggctgagttcaatgacaagttggaccag
ggctgtgtcatcccctgtcctacggctgaggacatcaccaagcgtggcgtaccacccatg
tcacctcctttggccatgtgggagagagaggctcaggtggtcgagctggagaaaggcgag
tcgggactgggcttcagtatcctggactaccaggatccagaagatgtcactaaaacagtg
ctggtcatccgctccttggtgcctgggggtgtagcagatcaagatggtcgcctgctgccc
ggcgaccgactcatgtttgtcaatgataccgacctggaaggttccagcctggattatgct
gtgtatgtccttaaatccactggttatggccctgtccgcgtcggtgttgccaaacccctg
ccgctggaactgtgtggcggcttgacgcccatctcagagaggagcgtgcgggtttcctgc
gatgacaccgagaatcacactcaggccggcctgctagctgaagcggccgaggctttcgcc
aacacttaccactctgaggacaacagcttcggccagcagtgttacaaaagaacggaaaac
cagccacgttatcgcttcggcatcatggacaacgacaggcagcaagcccctcctccgcct
ccccgcaccagctttgagaagacaatcactgttgtccggggcaaccgtagccttgggatg
tcggtgagtgctatcaaggacggctcaggcatgctggtgcgcagtgtggtccaggggggc
tctgttagccaggatggcaggctgggggtgggggacgccatcttggccctcaacggagaa
cctacctccaacctgacaaacgccaaggccagggccacgctccgcagacactctgtcata
gggccagaaatgagtgtaacctatgtcccagcccagcaggtggacgaacaccgtatccgt
ctgtgtttgccccctctggcgtccatcgaggccgacagcgcctcttcctcgcccacccca
ccgacaccctctccagaacctgcatcggccccatccagacccctcagtccagtcaaagct
ccagctccaactcctgcttcatccacccgcacaccctccgcctcggtcagatttaaaact
gctgctccacatccagcctcagtcagagtctctgcttcgcttaaagctccattcaagggc
ccagccgtagttcccaccatcaccccggccccagactcaagcgttcagctgacgcgagca
ccaggccaatccctaggtatcagcataatgggaggcagaggcatgggccgcagactgagc
agtggagagatgatgaggggagtcttcatcaagcacatcagccccgacagcccggcagca
gataatggcaccctccggactggagacaggatactggaagtttgtggtgtggacttacga
gacgccagccatgagcaggcagtggaggccatccgcagggctggagacactgtggtcttc
ctggtccagtcgggacaacacagatctcagtctccgatactcaccaaccatgaaagacaa
actccaatgtcgcaacccaattcacacggcaacaaggaagcagagtcctgcggtggtttg
ttccttagtctctccccttcaaaccccttcattcccaccccctttaaggtaccttcgccg
gcatccgagagaaaggatcgaaggagcaccgtgactgtcacagcacctatcgcagcagca
gcagcagctgcagacgggggcgacaggggcaggaaaaagatgctgcagcgctacggcagc
ctgtcagggaagctccacatgattgagctggagaaggaccccgccgctcacggcctggga
atcagtctcacggggaacaaggacggctccagggcccgcatgagcgtctttgtggcagat
atagaccctcaaggtcccgccggtttagatggaaggatacgggttggagacgagctactg
gagatcaatggtcagatcttgtacggtcgcagtcaccagaatgcctccaccatcatcaac
agcgctccatctaaagtcaagattattctcatcaggaataaagctcagagtcaaaaggcc
caggaatccagatcagagtgtgaggacacggtcgactcccagatagactctgcagaacgt
ggagcgttgtccagcgacatccagcatgtcatcctacctcaggatcatgcaggtcttggc
ctctgcctggcagaagatgactctaaggatggagtggtggtcaggtctctggtccagcac
ggcacagctagtaaggatggcaggataatgactggagacacaatcatagcagtgggggat
gaacatgtagctggaatgtcagtggaaaaggtgtccagtttgattctcaaacatcgggtc
actgtcaagctctccatcagccgctccagcagtctctccccctcctcctccactcaacct
ctcccctcacccctctcccaaccctgctccacctctcccgtaccgtcccaaaccctcccc
gtttcctcctcctcctcttcatccctcaaaaccacacacacctctaccgcaggacagtct
gattggctgggagctgcgcccacgacgtctgaccctgtgagctgcccggtcgtagcgggc
agggaaaccacgatagagatctgcaaagggagcgtgggcctgggcctcagcattgtggga
ggatgtgacactctgctgggggcagtagtaatccatgaagtgaatgatggaggagcagca
cagagagatggaaggctgcaggctggagaccagatattagaggtaaacggcatagacctg
cggcaggctactcacgacgaagctattggcgtgctgcggctcaccacccaacgtgtttgc
ctgcgcgtcttcaggcaccaggaggcgtacagggaggaggacctgtgggacgtctttagc
atggagctcaggcctcgtcctggagaggagctcgggttcaccacagtggggaaaagtaat
gacacgggcatctttgtatcagatatcatcagaggaggcgtagcagattcagatggcagt
ttgttgctaggtgaccagatcctgtcaatcaacgaggaggatgtgcgcgcggcgtcacag
gaacacgcacagaagctgctgcagagttacagtggagtggttcatctggaggtggctcgt
tttaaagcgggggtgcagtactcacagcggagccagagcgaagactccgactgctccacc
ctgacgccctcgagtggaggtgatgcttccgccggccaccagagggagtcaaataacaaa
gcagggagctgtagtgagtggcagtcagcatttcaagacttccctgacgtcagaaaagta
ataatacaaaaggatccatgtgactccctgggcatcagtgtagcaggaggagtgggcagt
ccccatggcaacgtacctctttttattgctaccatggataccaatggactggctgccaaa
acacagctattacagacaggagacaagctcctcagtatcaatgacgtgtccacggaggga
atgacccacgtccaggccggagccctgctgaagaacgccactggaaccgtcagcctgcag
gtggcagaaggttcaggtgtgtgcagcacaaaggacgacagtgatgcccgtgcgcggtcg
tcaggccaacccagcagcctgccctgctcccacaacaacctctgcgcccgcatgtataag
accatcaccctggagagaggctcctcgggcctgggcttcagcatcgtgggagggttcggc
agtcctcacggagacctgcccatctacatcaaaaccgtcttcaacaagggggcggccata
gctgacggccggctgaaacgtggggatcagatcatcgccgtgaacggacactgcctggag
ggggtgactcacgctgaagctgtggacatcctcaagaagaccaagggaagcgtagtgctc
actgttctctcctga
DBGET
integrated database retrieval system
