Hippoglossus stenolepis (Pacific halibut): 118100367
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Entry
118100367 CDS
T08308
Symbol
si:dkey-92j12.5
Name
(RefSeq) multiple PDZ domain protein isoform X1
KO
K06095
multiple PDZ domain protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04517
IgSF CAM signaling
hsp04519
Cadherin signaling
hsp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
118100367 (si:dkey-92j12.5)
04519 Cadherin signaling
118100367 (si:dkey-92j12.5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118100367 (si:dkey-92j12.5)
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Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
T15H9-4_C
L27_1
Motif
Other DBs
NCBI-GeneID:
118100367
NCBI-ProteinID:
XP_047194013
LinkDB
All DBs
Position
2:complement(16090066..16130185)
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AA seq
1864 aa
AA seq
DB search
MEIMDTQHALEAVGRLQAKLKERGEAPTQEKLSLLKTVLQSPLFHHILSLQQAKRKPLAK
GKGISKSVSMNCGPCPGVPVGLKTLCHSDSYTWAMENRSSHREGSMSSLGSQDLSFSDIY
PNNCTHTESQYCTPPRISRTMSMGRNLAAIAHERRHVEMIELTNDGKGLGFGIIGGRSTG
VMVKTILPGGAAGRDKRLRSGDQILRIGDTDLAGMNSEQVAQVLRNAGTKVKLLIARDIT
KDNHLSSPALSQDSLDGKLNDFNDEYEFSVQFTKNSRGLGFTISSYIGDLNSVYSAGVMV
KSIVKGSAIDQDGRIHIGDIILSVDGVSMHGCSEQRAMEVLRRTGPLVRLRLLRKSVRLS
HILPPVPPLQPLRHSHSFHEGNPYRVALNRIQETGICSLREISRRAAYANRRPRHDFRNG
GKLMPAEEEYLRKRWQHAVGPRYEVIVCQLERFSETSGLGISLEARAGHHYLCSVLPEGP
IGQSDKIFTGDQILEVNGIPLIGETHKEVVNLLKELPIHVCLVCSRVVPPSIPNSDEEDD
NEVHLTLKELLAEFNDKLDQGCVIPCPTAEDITKRGVPPMSPPLAMWEREAQVVELEKGE
SGLGFSILDYQDPEDVTKTVLVIRSLVPGGVADQDGRLLPGDRLMFVNDTDLEGSSLDYA
VYVLKSTGYGPVRVGVAKPLPLELCGGLTPISERSVRVSCDDTENHTQAGLLAEAAEAFA
NTYHSEDNSFGQQCYKRTENQPRYRFGIMDNDRQQAPPPPPRTSFEKTITVVRGNRSLGM
SVSAIKDGSGMLVRSVVQGGSVSQDGRLGVGDAILALNGEPTSNLTNAKARATLRRHSVI
GPEMSVTYVPAQQVDEHRIRLCLPPLASIEADSASSSPTPPTPSPEPASAPSRPLSPVKA
PAPTPASSTRTPSASVRFKTAAPHPASVRVSASLKAPFKGPAVVPTITPAPDSSVQLTRA
PGQSLGISIMGGRGMGRRLSSGEMMRGVFIKHISPDSPAADNGTLRTGDRILEVCGVDLR
DASHEQAVEAIRRAGDTVVFLVQSGQHRSQSPILTNHERQTPMSQPNSHGNKEAESCGGL
FLSLSPSNPFIPTPFKVPSPASERKDRRSTVTVTAPIAAAAAAADGGDRGRKKMLQRYGS
LSGKLHMIELEKDPAAHGLGISLTGNKDGSRARMSVFVADIDPQGPAGLDGRIRVGDELL
EINGQILYGRSHQNASTIINSAPSKVKIILIRNKAQSQKAQESRSECEDTVDSQIDSAER
GALSSDIQHVILPQDHAGLGLCLAEDDSKDGVVVRSLVQHGTASKDGRIMTGDTIIAVGD
EHVAGMSVEKVSSLILKHRVTVKLSISRSSSLSPSSSTQPLPSPLSQPCSTSPVPSQTLP
VSSSSSSSLKTTHTSTAGQSDWLGAAPTTSDPVSCPVVAGRETTIEICKGSVGLGLSIVG
GCDTLLGAVVIHEVNDGGAAQRDGRLQAGDQILEVNGIDLRQATHDEAIGVLRLTTQRVC
LRVFRHQEAYREEDLWDVFSMELRPRPGEELGFTTVGKSNDTGIFVSDIIRGGVADSDGS
LLLGDQILSINEEDVRAASQEHAQKLLQSYSGVVHLEVARFKAGVQYSQRSQSEDSDCST
LTPSSGGDASAGHQRESNNKAGSCSEWQSAFQDFPDVRKVIIQKDPCDSLGISVAGGVGS
PHGNVPLFIATMDTNGLAAKTQLLQTGDKLLSINDVSTEGMTHVQAGALLKNATGTVSLQ
VAEGSGVCSTKDDSDARARSSGQPSSLPCSHNNLCARMYKTITLERGSSGLGFSIVGGFG
SPHGDLPIYIKTVFNKGAAIADGRLKRGDQIIAVNGHCLEGVTHAEAVDILKKTKGSVVL
TVLS
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcatggatacgcagcatgccttggaggctgtggggagactacaagctaaactg
aaggagcggggggaggcccccacacaggagaaactctccctgctgaagaccgtcctgcag
agccccctgttccaccacatactcagcttacagcaagctaagcggaagcccctggcgaag
gggaagggcatttccaaatctgtatccatgaactgtggaccatgcccaggcgtaccagtg
gggttgaagactctgtgtcacagtgactcttacacatgggccatggagaacagatcctcc
cacagggagggcagcatgtcttccctgggctcgcaggatctgtccttctcggacatctat
cccaacaactgcactcacaccgaatcgcagtactgcactccccctcggatctcccgcacc
atgtccatgggcagaaacctggctgctattgctcacgagaggcgtcatgtggagatgatt
gagctgaccaatgacgggaagggccttggctttggcatcataggagggcggagcacagga
gttatggtcaagaccatcctacctggaggagctgccggccgggataaacgcctgcgtagt
ggagatcagatcctgcgcatcggagacacagacctggcgggcatgaacagtgagcaggtg
gcacaggtgctgcgaaatgctggtaccaaggtgaagctgctcattgccagggatatcacc
aaggacaaccacctatcctcacctgccctcagccaggacagcttggatggcaagctcaat
gacttcaatgatgagtatgagttcagtgtgcagttcactaaaaacagccggggcctggga
ttcaccatctctagctacataggtgacctcaattcagtgtacagtgccggtgtgatggtg
aagagcattgtgaaaggcagcgctattgatcaagatggacgcatccacattggagatatt
atactatctgtagatggcgtgagcatgcatggctgcagtgagcagagggcaatggaggtg
ctgaggaggacggggcccctggtcagactgaggttgctgaggaaatccgtccgtctgagt
cacatcctgccgccggttcctcccctgcagccgctccgacactcccacagcttccacgag
gggaatccctacagagtggccctcaacaggattcaagagacaggaatctgctccctgcgt
gagatctcccggcgagcagcatacgccaacagacgaccccgacatgatttcagaaatggc
gggaaactgatgccagctgaagaggagtacctgaggaagaggtggcagcatgcggttgga
ccccgatatgaagttattgtgtgtcagctggagcggttcagcgagacaagtggactgggc
atcagcctggaggctcgggcaggacatcattacctgtgctccgtcttacctgaggggccc
attggccaaagtgataagatcttcactggagaccagatattggaggtgaatgggatccct
ctcattggagagacacataaggaggtggtcaatcttctgaaggagctgccgatccatgta
tgtctggtgtgctctcgagttgtccccccttcaattccaaacagtgatgaggaagatgat
aatgaagtccacctcaccctgaaagagctgctggctgagttcaatgacaagttggaccag
ggctgtgtcatcccctgtcctacggctgaggacatcaccaagcgtggcgtaccacccatg
tcacctcctttggccatgtgggagagagaggctcaggtggtcgagctggagaaaggcgag
tcgggactgggcttcagtatcctggactaccaggatccagaagatgtcactaaaacagtg
ctggtcatccgctccttggtgcctgggggtgtagcagatcaagatggtcgcctgctgccc
ggcgaccgactcatgtttgtcaatgataccgacctggaaggttccagcctggattatgct
gtgtatgtccttaaatccactggttatggccctgtccgcgtcggtgttgccaaacccctg
ccgctggaactgtgtggcggcttgacgcccatctcagagaggagcgtgcgggtttcctgc
gatgacaccgagaatcacactcaggccggcctgctagctgaagcggccgaggctttcgcc
aacacttaccactctgaggacaacagcttcggccagcagtgttacaaaagaacggaaaac
cagccacgttatcgcttcggcatcatggacaacgacaggcagcaagcccctcctccgcct
ccccgcaccagctttgagaagacaatcactgttgtccggggcaaccgtagccttgggatg
tcggtgagtgctatcaaggacggctcaggcatgctggtgcgcagtgtggtccaggggggc
tctgttagccaggatggcaggctgggggtgggggacgccatcttggccctcaacggagaa
cctacctccaacctgacaaacgccaaggccagggccacgctccgcagacactctgtcata
gggccagaaatgagtgtaacctatgtcccagcccagcaggtggacgaacaccgtatccgt
ctgtgtttgccccctctggcgtccatcgaggccgacagcgcctcttcctcgcccacccca
ccgacaccctctccagaacctgcatcggccccatccagacccctcagtccagtcaaagct
ccagctccaactcctgcttcatccacccgcacaccctccgcctcggtcagatttaaaact
gctgctccacatccagcctcagtcagagtctctgcttcgcttaaagctccattcaagggc
ccagccgtagttcccaccatcaccccggccccagactcaagcgttcagctgacgcgagca
ccaggccaatccctaggtatcagcataatgggaggcagaggcatgggccgcagactgagc
agtggagagatgatgaggggagtcttcatcaagcacatcagccccgacagcccggcagca
gataatggcaccctccggactggagacaggatactggaagtttgtggtgtggacttacga
gacgccagccatgagcaggcagtggaggccatccgcagggctggagacactgtggtcttc
ctggtccagtcgggacaacacagatctcagtctccgatactcaccaaccatgaaagacaa
actccaatgtcgcaacccaattcacacggcaacaaggaagcagagtcctgcggtggtttg
ttccttagtctctccccttcaaaccccttcattcccaccccctttaaggtaccttcgccg
gcatccgagagaaaggatcgaaggagcaccgtgactgtcacagcacctatcgcagcagca
gcagcagctgcagacgggggcgacaggggcaggaaaaagatgctgcagcgctacggcagc
ctgtcagggaagctccacatgattgagctggagaaggaccccgccgctcacggcctggga
atcagtctcacggggaacaaggacggctccagggcccgcatgagcgtctttgtggcagat
atagaccctcaaggtcccgccggtttagatggaaggatacgggttggagacgagctactg
gagatcaatggtcagatcttgtacggtcgcagtcaccagaatgcctccaccatcatcaac
agcgctccatctaaagtcaagattattctcatcaggaataaagctcagagtcaaaaggcc
caggaatccagatcagagtgtgaggacacggtcgactcccagatagactctgcagaacgt
ggagcgttgtccagcgacatccagcatgtcatcctacctcaggatcatgcaggtcttggc
ctctgcctggcagaagatgactctaaggatggagtggtggtcaggtctctggtccagcac
ggcacagctagtaaggatggcaggataatgactggagacacaatcatagcagtgggggat
gaacatgtagctggaatgtcagtggaaaaggtgtccagtttgattctcaaacatcgggtc
actgtcaagctctccatcagccgctccagcagtctctccccctcctcctccactcaacct
ctcccctcacccctctcccaaccctgctccacctctcccgtaccgtcccaaaccctcccc
gtttcctcctcctcctcttcatccctcaaaaccacacacacctctaccgcaggacagtct
gattggctgggagctgcgcccacgacgtctgaccctgtgagctgcccggtcgtagcgggc
agggaaaccacgatagagatctgcaaagggagcgtgggcctgggcctcagcattgtggga
ggatgtgacactctgctgggggcagtagtaatccatgaagtgaatgatggaggagcagca
cagagagatggaaggctgcaggctggagaccagatattagaggtaaacggcatagacctg
cggcaggctactcacgacgaagctattggcgtgctgcggctcaccacccaacgtgtttgc
ctgcgcgtcttcaggcaccaggaggcgtacagggaggaggacctgtgggacgtctttagc
atggagctcaggcctcgtcctggagaggagctcgggttcaccacagtggggaaaagtaat
gacacgggcatctttgtatcagatatcatcagaggaggcgtagcagattcagatggcagt
ttgttgctaggtgaccagatcctgtcaatcaacgaggaggatgtgcgcgcggcgtcacag
gaacacgcacagaagctgctgcagagttacagtggagtggttcatctggaggtggctcgt
tttaaagcgggggtgcagtactcacagcggagccagagcgaagactccgactgctccacc
ctgacgccctcgagtggaggtgatgcttccgccggccaccagagggagtcaaataacaaa
gcagggagctgtagtgagtggcagtcagcatttcaagacttccctgacgtcagaaaagta
ataatacaaaaggatccatgtgactccctgggcatcagtgtagcaggaggagtgggcagt
ccccatggcaacgtacctctttttattgctaccatggataccaatggactggctgccaaa
acacagctattacagacaggagacaagctcctcagtatcaatgacgtgtccacggaggga
atgacccacgtccaggccggagccctgctgaagaacgccactggaaccgtcagcctgcag
gtggcagaaggttcaggtgtgtgcagcacaaaggacgacagtgatgcccgtgcgcggtcg
tcaggccaacccagcagcctgccctgctcccacaacaacctctgcgcccgcatgtataag
accatcaccctggagagaggctcctcgggcctgggcttcagcatcgtgggagggttcggc
agtcctcacggagacctgcccatctacatcaaaaccgtcttcaacaagggggcggccata
gctgacggccggctgaaacgtggggatcagatcatcgccgtgaacggacactgcctggag
ggggtgactcacgctgaagctgtggacatcctcaagaagaccaagggaagcgtagtgctc
actgttctctcctga
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