Hippoglossus stenolepis (Pacific halibut): 118100416
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Entry
118100416 CDS
T08308
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
hsp03015
mRNA surveillance pathway
hsp03040
Spliceosome
hsp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118100416
09122 Translation
03013 Nucleocytoplasmic transport
118100416
03015 mRNA surveillance pathway
118100416
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118100416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118100416
03041 Spliceosome [BR:
hsp03041
]
118100416
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118100416
TREX complex
118100416
Spliceosome [BR:
hsp03041
]
Complex C
Other components
EJC/TREX
118100416
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118100416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_5
RRM_occluded
FYTT
Motif
Other DBs
NCBI-GeneID:
118100416
NCBI-ProteinID:
XP_035001362
LinkDB
All DBs
Position
2:3377454..3380259
Genome browser
AA seq
271 aa
AA seq
DB search
MSDKMNMSLDDIIKMNRKGGSGRGGGSSGPGAGSGRAGGSSRPTRGRQNNFNRERNNRPA
PYTRPRELPDKWQHDMFEDHVGGRRGPSAVPERSVESNGKLLVSNLEFGVSDSDIKELFA
EFGPLQKTSVHYDRSGRSKGTADVHFENKADAQKAMKHYNGVPLDGRPMKIQQVTSEVDE
HRPSTQSSNRGFDRSRLGQPKFERRDRGEKRQSGGGGGGGGGGGGGGGGGGGGGGFRGRG
RGGGNRAPQLSAEELDAQLDAYNAKFQMDTS
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaagatgaacatgtctctggatgacattatcaagatgaacaggaaaggaggc
agcggccgcggcggaggatcatcagggcccggtgcgggttcaggtcgggccgggggatcg
tcgaggccaacgcggggtcgacagaacaacttcaaccgggagagaaacaacaggcccgca
ccgtacacccggcccagagagttaccagacaaatggcagcatgacatgtttgaggatcat
gtcggtggacgcaggggaccgagcgcagtacctgaaagaagtgtagagagtaacggcaaa
ctgctggtctccaatcttgaatttggtgtctccgactcagatatcaaggagctgtttgca
gagtttggtccattacagaaaacatctgttcactatgatcggtctggccgcagtaaagga
acggcagatgttcactttgaaaataaggcagatgcacaaaaagccatgaagcactacaat
ggtgtcccacttgatggccgtcccatgaaaatccagcaagtgacgtcagaggtcgatgaa
catagaccgtcaacacaaagttcaaacagaggttttgaccggagcagacttggtcaaccc
aagtttgaaaggagggaccgaggcgaaaagaggcaaagtggcggaggaggtggcggagga
ggaggaggtggtggtggtggaggtggaggcggcggcggcggaggtttccgaggacgtgga
agaggaggtggaaacagagccccccagctttctgcagaggagttggatgcccagttggat
gcatacaatgccaagtttcagatggacaccagttag
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integrated database retrieval system
