Hippoglossus stenolepis (Pacific halibut): 118100548
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Entry
118100548 CDS
T08308
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118100548 (rnf40)
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118100548 (rnf40)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
118100548 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
BRE1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
OVT1
SpoIIE
Motif
Other DBs
NCBI-GeneID:
118100548
NCBI-ProteinID:
XP_035001681
LinkDB
All DBs
Position
21:complement(9363511..9375388)
Genome browser
AA seq
1002 aa
AA seq
DB search
MSGVGGGKRPSGGDSPPCPPEKKSKKEEKTTTTLIEPIRIAGVSSTEEMDMKVIQFKNKK
LCERLEQRQTMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLEENVHVLRKRIKPDAPV
ASTPAPPSAPLPDPTPMEEDGVNLASPTSAVPPPPLPEVQNEGEQAEKQQEECPEERQEE
KQPPPPPVGSEELMTTTEPSQNSTKDASPPPPPLSDNAKGFLTTLEHSSEEELTLHLQDR
MQFSKEAIACLVCVFDRLHSRIDSMCKHVQASACEDSSQSDIINVSHTLLDENSRLRDLA
ILLQGRHHKMSMEYNELVDKVTSSETKVSEMETTVEDLQWDIEKLRNREQKLNKHLAEAM
EQLKSGYSSTGSSGGLPGGQITLNIQKFESLNAELEHNQELANSRMAELEKLQAELQEAV
RESEKLKIDLRNIPEEVVKETLEYKCLQSQFSVLYNESLGVKTQLDEARALLLTAKNAHL
RQIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMR
HLISSLQNHNLQLKGDVQRYKRKLRETQMEINKLRCQSGDTPVLILEETTSDSVDVKKED
DEDQEEEEEERRKELERQRAREREREAERERERERERERQRSDELKRKDSDTLKMLRIEL
KKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVDELRMRVRELEERERKESK
KLADEDALRKIRVAEETIEHLQKKLAATKQEEEALLSEMDVTGQAFEDMQEQNSRLLQQL
REKDDANFKLMSERIKSNQIYKLLKEEKEELAEQVLRFKTQVDAQLLVVQKLEEKEGVLQ
SALATLEKELAVRTQALELNKRKAVEAAQLAEDLKVQLEHTQAKLKEIHVSVAENRTARE
RESSNLKRAQEDLSRLRRKLEKQKKVEVYSDADEILQEEINQYKAKLRCPCCNTRDKETV
LTKCFHVFCYECLKMRYDTRQRKCPKCNCAFGANDFHRIYIT
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgttgggggaggaaaacgtccctcagggggggacagccccccttgcccacct
gagaagaaaagcaagaaggaggagaagaccaccaccacactcatcgagcccattcgaata
gctggggtctcttctacggaggaaatggacatgaaggtgatccagttcaagaataagaaa
ctatgtgagcgactggagcagagacagaccatggaggatgagttacgagagaaaatcgag
aagctggagaagagacaagccaccgatgacaccaccctgctgattgtcaaccgctactgg
tcacagttggaagagaatgtgcatgttctacgcaaacgtataaagccagatgctccagtg
gcgtctaccccggccccgccctctgcccctctccctgatcccacaccgatggaggaagat
ggcgtcaatctggcttcaccaacctctgcagttcctcctcctccccttccagaagtccag
aatgagggcgagcaggcagagaaacagcaggaggagtgtccggaagagcgtcaggaggag
aagcagcctcctcctcctcctgtggggtcagaagagttgatgacaacgacagagccgtca
cagaactcaacaaaagatgcgtcaccacctcctcctccactaagtgataatgccaagggt
ttcctgaccacgctggagcacagcagcgaggaagagctcaccctgcacctccaggaccgc
atgcagttcagcaaggaagcgattgcctgcttggtctgtgtcttcgacaggctgcacagt
cgaattgacagtatgtgcaagcacgtccaagcttcagcatgtgaggacagtagccagtct
gacatcatcaatgttagccacactctgctggatgagaacagtcgactgagagacctggcc
attctcctgcagggtcgtcaccacaagatgtccatggagtacaatgagttggtggacaag
gtgaccagctccgagaccaaggtgtctgagatggagacgacagtggaggacctgcagtgg
gacattgagaaactccgcaacagggaacaaaaactcaacaaacatctggcagaggccatg
gaacagctgaagtctggatacagcagcactggtagctcaggcgggcttcctggaggtcag
attacactgaatattcagaagtttgagagtctcaatgcagagttggagcacaaccaggag
ttagcaaacagccgcatggcagagttggagaaactgcaggcggagctccaggaggctgtg
agagagagcgagaagctcaagattgatttgcgcaacattccagaagaggttgtgaaggag
actctagagtataaatgtctgcagtctcagttctccgtgctgtacaatgagtcgcttggg
gtcaaaacccagctggatgaagcacgggcgctcctgctcaccgcaaagaacgcccacctc
cgacagattgagcacatggagagtgatgagctgtcccttcaaaagaagctgcggactgag
gtcatccagctggaggataccttggctcaggtgcgcaaagagtatgagatgctgcgcatt
gagttcgagcagaacctggcagccaacgagcaagcaggtccaatcaacagggagatgcga
cacttaatcagcagccttcagaaccacaacctccagttgaaaggggatgtgcagcgttat
aagaggaagttgcgggaaacacagatggagatcaataagttgcgttgtcagagcggcgac
acgccggttctgattctcgaggagacgacgagtgacagcgtcgacgtgaagaaagaggac
gatgaggaccaggaggaggaggaggaggagaggaggaaggagcttgagagacagcgggcc
agggagagggagagagaggctgagcgagaacgagagagggagcgtgagagagagagacag
cgcagcgacgagctgaagagaaaagactcagacacactgaagatgctcagaatagaactc
aaaaaagcccaggagtcccagaaagagatgaagctcttgttggacatgtacaagtcagct
cccaaggagcagagggacaaagtgcagctcatggcagctgaacgcaaatctaaagctgag
gtggatgagctgaggatgagggtacgagagctggaggagagggaaaggaaggaaagcaag
aagctggctgatgaagatgccctcaggaagatccgagtagcagaagagaccattgagcat
ctgcagaagaaacttgctgcaactaagcaggaggaggaagccctgctgagtgagatggac
gtcacgggccaggcctttgaggacatgcaggagcagaacagccgactgctgcagcagtta
agggagaaggacgatgccaatttcaagctgatgagcgagcgaatcaaatcgaaccagatc
tacaagctgctgaaagaggagaaagaggagctggcagaacaagtcctcagattcaaaacc
caggtggacgctcagctgctggttgtgcagaagctggaagagaaagagggcgtcctccag
agcgcgctggccactctggaaaaagagttggctgtccggacgcaagcactagagctcaac
aagaggaaggcagtggaggctgcccaactggcagaagacctgaaggtgcagctggagcac
acgcaggccaagcttaaggagatccacgtctctgtggcagagaaccgcacggcccgggag
agggagagcagcaacctgaaacgagcacaggaggatctgtcccggctgaggcggaagctg
gagaaacagaagaaggtggaggtttactctgacgctgatgagatcctgcaggaggagatc
aaccagtacaaggccaaactgcgctgcccctgctgcaacacccgagacaaggagacggtg
ctcaccaagtgtttccacgtattctgctacgaatgtctgaagatgcgttacgacacccgg
cagaggaagtgccccaagtgcaactgtgccttcggcgccaacgactttcaccgcatctac
attacctaa
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