Hippoglossus stenolepis (Pacific halibut): 118100704
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Entry
118100704 CDS
T08308
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118100704 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118100704 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118100704 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118100704 (col1a1b)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118100704 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
118100704
NCBI-ProteinID:
XP_035001935
LinkDB
All DBs
Position
21:16244761..16259887
Genome browser
AA seq
1450 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDMSYGNCALDGQLYNDKDVWKPEPCRICVCDSGT
VMCDEVICEDTSDCADPIIPDGECCPICPDDGIEDGPTMPEPEKGETGPNGDKGLPGAPG
NDGFPGQPGLPGPPGPPGPPGLGGNFSPQMSYTDHSKSSGPPVPGPMGPMGARGAPGSSG
SSGPQGFTGPSGEPGEPGAAGPMGPRGPGGPNGKNGDDGEPGKPGRPGERGAAGSQGARG
FPGTPGLPGIKGHRGFSGLDGAKGDGGPAGPKGEPGSSGENGIPGAMGARGLPGERGRPG
PPGPAGARGNDGNSGGSGPPGPTGPAGPPGFPGGAGAKGESGPQGGRGSEGPQGSRGEPG
NPGSAGSAGPAGNPGSDGAPGNKGGPGSAGIAGAPGFPGTRGPSGAQGAVGAPGPKGNNG
DHGPSGPKGEPGAKGDGGPAGVQGLPGPSGEEGKRGGRGEPGGAGARGPAGERGGPGARG
FPGADGAAGGKGGPGERGAPGAMGSQGATGESGNSGAPGAPGSKGVTGSPGSPGPDGKAG
PTGTPGQDGRSGPAGSLGSRGQPGVMGFPGPKGPGGESGKPGERGPAGATGALGAPGKDG
DVGAPGPSGIAGPAGEKGEQGPGGPSGFQGLPGPQGSTGETGKPGEQGVNGESGPPGPFG
PRGDRGFPGERGTSGIAGPTGARGAPGPGGNDGAKGEAGVNGAPGVNGSPGMQGMPGERG
ASGLSGAKGERGDAGAKGVDGGLGKDGSRGMSGGIGVPGPPGAQGEKGEGGAPGVSGASG
PRGSPGERGEGGPSGPAGFAGPPGTDGQPGAKGEAGDSGPKGDAGAPGPGGPVGAAGPQG
PSGPSGPKGSRGGAGPPGATGFPGPAGRVGPPGPSGVSGPAGPGGPLGKDGARGGRGETG
PAGRPGEAGSSGAPGMNGEKGSAGSDGAPGTSGIPGPQGIAGGRGMVGLPGQRGERGFSG
LPGPSGEPGKQGSSGLHGERGPPGPSGPPGLSGASGEAGREGSAGHDGAPGRDGVAGPKG
DRGESGNAGSPGAPGAPGAPGAFGPSGKNGDRGESGAAGPAGPSGPAGVRGPAGPAGAKG
DRGEAGDAGDRGHKGHRGFTGMQGLPGTAGTSGERGPAGTSGPAGPRGPAGSNGSPGKDG
MNGLPGPIGPPGPRGRNGEMGPSGPPGPPGPAGPPGSPGGGFDFISQPSQEKAPDPFRGG
GYRADDPKMMQDRDMEVDTTLKTLTQKVENIRSPDGTQKSPARMCRDLRMCHPEWKSGSF
WVDPNQGSPLDAIKVHCNMETGETCVYPSESTVPMKNWYNSKNIREKKNVWFSEAMTGGY
QFQYGTDGADTEDVSIQMTFMRLMSNQASQNVTYHCKNSIAYMDAATGNLKKALLLQGSN
DVEIRAEGNSRFTYSVSEDGCTTHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEF
GVEVGPVCFL
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagctctgttgctgagcgcaacagtgcttttggcg
agaggtcaaggcgaggatgatatgtcatacggcaactgcgcattagatggacagttgtac
aatgacaaggatgtatggaaaccagagccctgcaggatctgcgtctgcgacagtggaacc
gtcatgtgcgacgaggtgatctgcgaggacacatccgactgcgccgacccaatcatccca
gacggagagtgctgccctatctgccctgatgatgggattgaggatggcccaacaatgcct
gagcctgaaaagggagagactggccccaatggagacaagggtctgcccggtgctcctggc
aatgatggattccccggacagcccggtcttcctggcccacccggcccccctggcccccct
ggccttggcggaaacttctctcctcagatgagctacactgaccactccaaatctagtggc
ccacctgttcccggcccaatgggtcctatgggtgctcgtggtgctcctggatcatctggc
tcctctggtcctcagggcttcactggaccctctggtgagcctggtgagcccggagctgct
ggtcccatgggtccccgcggtcctggtggccccaatggaaagaacggagatgatggtgag
cctggcaaacctggacgccccggtgagcgcggagctgctggatctcagggtgctcgtgga
ttccccggaactcccggactccccggcatcaagggacacagaggtttcagcggtcttgat
ggagccaagggagacggcggacctgctggacctaagggagagcctggttcctccggtgag
aacggtattcccggtgccatgggtgcacgtggtctccctggtgagagaggccgccccgga
ccccctggccctgctggcgctcgtggaaacgatggcaactctggtggctctggacctcct
ggacccactggacccgctggtcctcctggattccccggtggtgctggagctaagggagag
tctggtcctcagggaggccgtggatctgagggaccccagggatcccgtggtgagcctggt
aacccaggatctgctggatccgctggacctgctggaaaccccggatctgatggtgccccc
ggtaacaagggtggtcctggttctgctggtattgctggtgctcctggtttccctggaacc
cgtggtccttctggagctcagggcgctgttggtgctcctggtcccaagggtaacaatggt
gaccacggtccttccggtcctaagggagagcctggtgcaaagggagatggtggccccgct
ggagttcagggactccctggaccctctggtgaagagggaaagagaggaggtcgcggagag
cccggtggtgctggagctcgtggacctgctggagaacgtggtggccctggggctcgcggt
ttccctggtgctgatggtgctgctggtggcaagggaggccctggtgagcgtggtgccccc
ggcgcaatgggatctcaaggagccactggtgagtctggcaactccggagctcctggtgct
cctggatccaagggtgtgactggtagcccaggaagccctggccctgatggcaaagctgga
cccactggcactcctggacaagatggccgctccggacctgccggttcacttggaagcaga
ggacagcctggagttatgggattccccggacccaagggacctggtggtgagagtggaaag
cccggcgagagaggacctgctggtgctactggagctcttggtgctcctggcaaagatggt
gacgttggtgctccaggaccttctggcattgctggacctgctggagagaagggagagcag
ggacccggtggtccttccggattccagggacttcctggaccccaaggttctactggtgag
actggcaagcctggtgagcagggtgtcaacggtgagtctggaccccccggcccattcgga
cccagaggcgacagaggtttccctggtgagcgcggtacttccggcattgctggcccaact
ggagcccgtggtgcccccggacctggtggtaacgatggagctaagggagaggccggtgtc
aacggcgcccctggtgtcaatggatccccaggtatgcagggtatgcccggtgagcgcgga
gcttctggtctctccggtgccaagggagagagaggtgatgctggtgccaagggcgttgat
ggtggactcggcaaagacggctcacgtggtatgtctggtggtattggagtccctggacct
cctggtgctcagggtgagaagggtgagggtggtgcccctggagtctctggagccagtgga
cctcgtggttctcctggtgagcgtggagagggtggaccttcaggacccgccggattcgct
ggacctcctggtactgatggtcagcctggtgccaagggagaggctggtgacagcggaccc
aagggagatgctggtgcccctggacccggtggacctgttggagctgctggtccccaggga
ccttctggaccctctggacctaaaggttctcgtggtggtgctggacctcctggtgctact
ggtttccctggacccgctggcagagttggaccccctggcccctctggagtttccggaccc
gctggacccggcggaccccttggcaaagatggagcaagaggaggccgtggtgagactggc
cctgctggtcgccctggtgaggctggttcttctggagcccctggaatgaatggagagaag
ggatctgctggttccgatggtgcccctggtaccagtggtattcccggaccccaaggtatt
gctggtggtcgtggtatggttggtctccctggacagcgtggagagcgtggtttctctggc
ctccctggaccctctggtgagcctggtaagcagggatcctctggactccatggcgagcgt
ggaccccctggaccttctggaccccctggactgtctggtgctagcggagaggctggtcgt
gagggatctgccggtcacgatggtgcccctggtcgcgatggagttgctggccccaaggga
gaccgtggagagtctggtaatgctggatcccctggagcccctggtgctcctggagctccc
ggagctttcggcccctctggcaagaatggtgaccgtggagagtctggtgccgctggtcct
gctggtccttctggccccgctggtgtccgtggacctgctggccctgctggtgccaaggga
gacagaggagaggctggtgatgctggagatagaggccacaagggacacagaggattcacc
ggtatgcaaggtctgcccggtaccgctggaactagtggagagagaggacccgctggtacc
tctggacccgctggacccagaggacctgctggatctaatggttcccctggtaaggatggc
atgaacggtctgcccggacccatcggaccccctggacctcgtggtcgcaatggagagatg
ggaccttctggtcctcccggacctccaggacctgccggaccccctggttctcctggtggc
ggattcgacttcatcagccagccatctcaggagaaggcccccgatcccttccgtggaggc
ggataccgcgctgacgaccccaaaatgatgcaagatcgcgacatggaggttgacaccacc
ctcaagaccctgactcagaaggtcgagaatatccgcagccccgacggtacccagaagagc
cccgcccgcatgtgccgtgacctgagaatgtgccaccctgagtggaagagcggctctttc
tgggtcgatcccaaccagggctctcctctggatgccatcaaggtccactgcaacatggag
accggagagacctgcgtctaccccagcgagtccaccgtccccatgaagaactggtacaac
agcaagaacatcagagagaagaagaacgtctggttcagcgaggccatgaccggtggatac
cagttccagtatggcaccgatggagctgataccgaggatgtcagcatccagatgaccttc
atgcgcctgatgtccaaccaggcctctcagaacgtcacataccactgcaagaacagcatc
gcctacatggacgccgccaccggcaacctgaagaaggctctgctcctccagggctccaac
gacgtcgagatcagagccgagggcaacagccgcttcacatacagcgtcagcgaggatggc
tgcacgacacacactggcacatggggcaagacagtcatcgactacaagacatcaaaaaca
tcccgcctgcccatcattgacattgctcctatggatgttggtgcccctgatcaggaattt
ggcgtcgaagttggccccgtttgcttcttgtaa
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