Hippoglossus stenolepis (Pacific halibut): 118101054
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Entry
118101054 CDS
T08308
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-D
KO
K06461
integrin alpha M
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04145
Phagosome
hsp04514
Cell adhesion molecules
hsp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118101054
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
118101054
09142 Cell motility
04810 Regulation of actin cytoskeleton
118101054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118101054
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118101054
04515 Cell adhesion molecules [BR:
hsp04515
]
118101054
04090 CD molecules [BR:
hsp04090
]
118101054
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118101054
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
118101054
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
118101054
Cell adhesion molecules [BR:
hsp04515
]
Integrins
Integrin alpha subunits
118101054
CD molecules [BR:
hsp04090
]
Proteins
118101054
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
118101054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
ITGAX-like_Ig_3
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP_3
VWA_2
Copine
Motif
Other DBs
NCBI-GeneID:
118101054
NCBI-ProteinID:
XP_047194416
LinkDB
All DBs
Position
21:complement(15434824..15447111)
Genome browser
AA seq
1139 aa
AA seq
DB search
MAWIFAAAVFMSVLNTALCFNIDPVAWKSWDNSAAGFGYQVVQRQSDVLISAPLEQYSQL
GRGKIYKCTTTCRSLPFEAPEFAVNMSLGLTMTNDPISRNTMACGPTIPKDCKSITMYSG
ACFQIDQFDRFGSAVPPSSPECRAEADIAFLLDGSGSVNYGDFQTMKTFVKSIQSLLWER
YSMFPGRSSLMMSLLELNFRDFFSSGRWHSXNGIKQKGSTTNTASAIADVVQNVFTSAGG
SRPNVKKILIVITDGESTDRHNLPYAISLAENAKIVRFAIGVGGAFDSTRAKQELDSIAS
SLSTNHVFRVGSFNALDAITKNLQDKIFSIEGSQSTGETLKMEMAQAGFSVAYVPGGIQM
GTVGANQWKGGYMEYTLSGQKLSSYEPLFMLQDSYLGYSMTIAKTRQGQLTIVGAPRYQH
RGLVMAVRGQINQKIDPFPWQFQTGGYFGAEVRAMDVNNDGYTDLILISAPMYKEADREG
RVYVCGLARLRVECHFESPLVLRGDESDQARFGSSLAVLPDLNADDLREVAVGAPLENGG
QGSIYIFHGEGGSRVSSTYSQKIAASEVRQQLRFFGLSISDSSFDRSGDSLPDLAVGSKG
TVVLLRSKPVVMVEATMSFNPNQVPTKNPNCQNPLENTAEICFTMTKVSTVSTATQKINY
TLTLDATRKVPNNRAYIKDKQREKTGSIEVDLQGKMLPSEILYSGELCPQDALNVXKXEL
RFTPDSIPSTTNLKPSLAQQAQTTTYHSLEFEINCGTLHNKCVDNLKISFNFNRXEPKSL
KVGIDELLDVTVSVENPRQTXYNSYVKLTYPAGLSXQEVTGLQGRIECNSLDSEDGLSRG
MTTCTINNPIFKSDTEALFTVSYGIESNRRFDRKIFISANASSENQEHSTSSELYQMKWL
DVKYSILVTIESSLSYNNFTSGKNDVLKPHKQSIVVTNNIRALNFTVVIKVPVKLGDKDI
WVDSSSLQIPDCRREADEERXLSDFVAMIKENNVVDCSVARCGVFRCSRFMGRLESKKYK
ISANISSGWIEQIGLDSAKFLLTSTATLEYDTNQYIFFSTGSNNKPPIHKIEAEIEVYPQ
PDFTKEIVGGSLGGLALLALLTAGLYKAGFFKSKYKEMMNEAEEAAEPGANEAAATPEQ
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggcctggatatttgctgctgcagtattcatgtcagtgttgaatacggctctatgtttc
aatatcgaccccgtggcttggaagtcctgggacaacagtgccgcagggtttggctaccag
gtggtgcaaagacagtcagacgtgctcatcagcgctccccttgaacagtattcacaattg
ggaagggggaaaatatacaagtgcactacaacctgcagaagtctgccatttgaagcgcca
gaatttgcagtcaacatgtcccttggtttgacaatgacgaatgaccccatctcacgaaac
actatggcatgtggcccaaccatcccaaaggattgcaaaagtatcaccatgtacagcggc
gcatgcttccagatcgaccagtttgatcggtttggatccgcggtgccgccgtcctctcca
gagtgcagagccgaagcagatattgcttttctcttggatggttcaggcagcgtaaactat
ggagattttcaaacaatgaagacatttgtgaaaagcattcagtccttgttgtgggaaaga
tacagtatgttcccaggacgatcttctcttatgatgtcactgttggaattgaactttcgt
gactttttctcatctggacgatggcattcangtaatggaataaaacaaaaaggcagcaca
actaacacagctagtgccatcgcagatgtggtccaaaatgttttcacatctgcaggaggt
tctagaccaaacgtgaagaagatcctgatcgtcattactgatggagaatctactgacaga
cataacttgccatatgcaataagcttagctgagaatgcaaagattgttcgatttgctatt
ggggtggggggagcgttcgattccacaagggcgaaacaggaactggactctattgcatct
tcgctctcgacaaatcacgtgtttcgagtagggagctttaacgcacttgatgcaataacg
aagaatttgcaggacaaaatcttctctattgagggatctcagtccactggagagacactg
aaaatggaaatggctcaggcgggattcagtgtggcttatgtgccagggggaattcaaatg
ggcactgttggcgccaaccagtggaaaggaggctacatggaatatacattatcaggccag
aagctgagttcatatgagcctttgttcatgttacaagacagttatctgggttactccatg
actatcgcaaaaaccagacaaggccaattgacaattgttggcgctccgagatatcaacac
agaggacttgtgatggcagttcgtggacagatcaatcaaaagattgatcccttcccatgg
cagtttcagactggtggatattttggggcagaggttcgtgccatggatgtgaacaatgac
ggatacactgacctaatcctcatatctgcccctatgtacaaggaagctgatagagaggga
agagtttacgtttgcggtttagctcgtttgagggtcgagtgtcacttcgaatctccgtta
gtgctgagaggggatgagtccgaccaggcgaggtttggctcttctctcgctgtgctgcct
gatctcaacgcagatgacctcagggaggtggcagttggtgcacctctggagaacggtggt
caaggcagcatctacatattccacggcgaaggaggaagcagagtcagttcgacttactca
cagaaaattgctgcctctgaagtccggcaacaacttaggttcttcggtttgtcaatcagt
gactcgtcttttgaccgcagtggcgacagtctgcctgacttagcagtggggtcaaagggc
acagttgtcttactcaggtcaaagcctgtggtaatggtagaggctacgatgtcgttcaac
ccaaaccaggtccctacaaaaaacccaaactgccagaacccactggagaacacagctgaa
atctgctttaccatgacgaaagtttctacagtttccacagccactcaaaagatcaattat
actttaacactggatgccacccgcaaggtcccaaacaacagagcttacatcaaggacaaa
caacgagagaagaccgggtcaattgaagttgacttacaaggcaaaatgcttcccagtgaa
attctttattcaggtgagttgtgtcctcaggatgctctcaatgtgtagaaatgagagctc
agattcacccctgacagtattccctctactacaaaccttaaaccaagtctggcccagcag
gctcaaactaccacttatcattctttagaatttgagatcaactgtggcacactgcataac
aagtgtgtagataatctgaaaattagtttcaacttcaacaggtgagaaccaaaaagtttg
aaggtgggcattgatgaactgttggacgtcacagtatcagtggagaacccgaggcagact
nnctacaacagctacgtgaaacttacgtacccagctgggctctccnnacaggaggttaca
ggtttgcagggaagaatcgagtgcaactccttggacagtgaagatggcttatcgcgagga
atgacaacctgcactattaacaaccccattttcaagagcgacactgaggctttgttcacc
gtctcctatgggatcgaaagcaacagacgatttgacaggaagatttttatctctgcaaat
gcttccagtgagaatcaggaacattccacttcaagtgaactttaccaaatgaaatggttg
gacgtgaagtacagcattttggtcacgattgaaagctccctcagctacaacaacttcaca
tctggaaagaacgatgtgctgaaacctcacaagcagtcaattgtggtcacaaacaacatc
agggcgctgaacttcacggtggtgatcaaggtgcctgtcaagctcggcgataaagacatc
tgggtggattcgagcagtttgcagattccagactgccgaagagaagcagacgaagaacgt
nnactgtcagactttgttgctatgataaaggagaataatgtagtggactgctctgtagcc
aggtgcggagtgttcaggtgcagtaggttcatgggaagactggagagtaaaaagtacaaa
atctctgccaacatcagctcaggatggatagagcagattggactcgactctgcaaaattc
ctcttgaccagcacggctactctggagtacgacacaaaccagtacatcttcttttctacg
gggtctaataacaagcctccgattcacaagattgaagccgagatagaagtgtatccacaa
ccagatttcaccaaagaaatcgtcgggggatcgctgggagggttagctctgctggctcta
ctcactgctggcctgtataaggctggatttttcaagagtaaatacaaagaaatgatgaat
gaggcagaagaagcggcagaaccaggggctaatgaagctgcagccacaccagaacaataa
DBGET
integrated database retrieval system
