Hippoglossus stenolepis (Pacific halibut): 118101085
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Entry
118101085 CDS
T08308
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03420
Nucleotide excision repair
hsp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
118101085 (ercc4)
03460 Fanconi anemia pathway
118101085 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsp03032
]
118101085 (ercc4)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118101085 (ercc4)
DNA replication proteins [BR:
hsp03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
118101085 (ercc4)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
118101085 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
HHH_5
Motif
Other DBs
NCBI-GeneID:
118101085
NCBI-ProteinID:
XP_035002627
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All DBs
Position
21:7522741..7528571
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AA seq
900 aa
AA seq
DB search
MAGPLLEFETEMFLSLFGCDGLLVAAEGMGMDRILLQFMRVHSEKDSLVLLLNTTTPEQE
YFTEQLRVEGVTHLPRTVTSDVQSTERYTVYTEGGVLFVTSRILVVDFLTDRIPAHLISG
ILVFRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKATAFSSGFCQVERVMRNLFVKKL
YLWPRFQASVNTALDRHKPEVVELHVSLTPAMRAIQSSILDIMSACLKELKRYNPTLEAE
DLSLENTLGNGFEKTIRHYLDPLWHQLGAKTKALVQDLKVLRVLLLYLTQYDCVTFLNLL
ESLRSSQKIFGSNSGWLFLDSSTSMFMNARGRVYRMSESKKKLKVGAEAEKQKLPSTSDV
KRVLVLEKSPKWEALTEVLQEIERENKSSEHEPGRVLICASDDRTCAQLQQYIRRGSEGL
LNRLYARTIGKRDPAAAAALELDSHKKGNGWPKRGTKGKEPAQKKNTKSAKSKSRPSLTL
TQMVGKGETAEAAAMGSSGDEEELTEDEEGEEGQLKLDLSSDAYYGVLKEPLTVIHPLKG
CTDPHSLTRVLHEVEPSFVVLYDAEVSFVRQLEIYKATRPGKALRVYFLIYGGSTEEQKY
LTALSKEKKAFEHLIREKATMVIPEEREGREDTNLDLARSLEPANATTNTRKAGGQEQPK
EPSRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSISDLIGSLQSG
RLYTQCLSMTRYYKKPVLLIEFDPAKPFSLMARSDFRHEISSNDVSSKLTLLTLHFPRLR
ILWCPSPHVTADLFLELKQGRLEPDAAAAQAVTAESDTVAESAGLYNPGPYDFLLKMPGV
NTKNYRALIRNADSLADLAKLSKDKLAEILENANNAKILYEFLHNVADVPAPVQRKKKTS
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcccgctgctggagttcgagaccgagatgttcctgagtctgttcggctgcgac
gggctgctggtggcggcggaggggatggggatggaccgcatcctgctgcagttcatgcgg
gttcactcggagaaggacagcctggtcctcctgctcaacacgaccacccccgagcaggag
tacttcacggagcagctgcgggttgagggcgtgacccacctgcccaggacggtgaccagc
gacgtccagagcacggagcgctacaccgtttacaccgagggcggagtgctgtttgtcacc
agtagaatcctggtggtcgacttcctcaccgaccgcatccctgctcatctcatatcaggc
atcctggtgttccgtgcccataaaatcatcgagtcttgtcaggaggccttcatccttcgt
ctgttcagacagaagaacaagacgggattcatcaaggccttcaccgataaggccacagcc
ttctcctcaggcttctgccaggtggagcgtgtgatgagaaacctcttcgtcaagaagctc
tatctgtggcccaggttccaggcatcagtaaacacagcactggacaggcataaaccagag
gtggtggaactccatgtgtcgttgaccccagctatgagggccattcagagctccatcctg
gacattatgagcgcctgtctgaaggagctgaaacgctacaaccctacactggaggctgag
gacctctcactggagaacacgctcggaaatggttttgaaaagaccatccgtcattacctc
gaccccctgtggcaccaactgggagccaagaccaaggccctggtccaggacctgaaggtg
ttgagggttctcctgctctacctcacacagtacgactgtgtcaccttcctcaatctgctt
gagtcgctccgctccagccaaaagatctttggctccaattcagggtggctgttcctggac
tcgagcacttccatgttcatgaatgccaggggtcgtgtgtaccgcatgagtgaaagcaag
aagaaactcaaagtgggggcagaggctgagaaacagaagttaccctcgacctcagatgtg
aaaagagtcctggtgctggagaagagcccaaagtgggaggctctaactgaggtgctgcag
gagattgagagagagaacaagagctctgaacatgaaccaggccgcgtcttgatctgtgcc
agtgatgaccggacttgtgcccagctgcagcagtacatcaggcgcggctctgaggggctg
ctcaacagactgtatgctcgcacaatcggtaaacgggaccctgctgctgccgctgccctg
gagctcgactctcacaaaaagggcaatggctggcccaaaagaggaaccaaggggaaagag
cctgctcagaaaaaaaacacaaagtccgccaagagtaaaagccgaccatctctgaccctg
acccagatggtcgggaagggggagacggcggaggcagcagcgatgggcagcagtggagac
gaggaggaattgacggaggacgaagaaggcgaggaagggcaactgaagctggatttgtca
tctgacgcttactatggtgtcctgaaggagccgctgactgtcatccacccactgaaaggc
tgcactgacccccatagcttgacgcgggtgctgcacgaggtggagcccagttttgtggtc
ctgtacgacgctgaagtgagttttgtacgacaacttgagatctacaaagccactcggcct
ggaaaagcactcagggtgtatttcctcatctacggagggtcgacagaagaacagaagtac
ctcacagcactgtctaaggaaaagaaagcatttgaacacctcatcagggaaaaagctacc
atggtcataccagaggagagggagggacgagaagacaccaacctcgatcttgctagaagt
ttagagcctgccaacgccaccaccaacacccgcaaagcaggaggccaggagcagcccaaa
gagccctcacgagtcattgtggacatgcgtgagttccgcagtgaactcccctccttgctg
caccgccgtggtctggacatcgagcctgtcaccctagaagtcggtgactacatcctcacc
ccggacacatgcgtggagcgcaagagcatcagtgatctgattggctccttgcagagcggc
cgtctctacacccaatgtctctccatgacccgttattacaaaaagccagtgctgctcatt
gagtttgacccggctaaaccgttttccttaatggctcgatcagatttccgtcatgagatc
tcatctaatgacgtctcttcaaaactcaccttactcactttgcatttcccccgcctgcgg
atactctggtgtccctccccacatgtcacagctgacctcttcctggagctgaagcaaggc
cgcctggaacccgacgctgcagcagctcaggcagtcacagccgagtcggacacggtggct
gaatcagccgggctctacaacccaggaccttatgatttcctgttgaaaatgcctggggtc
aataccaaaaactatagggccctgataagaaatgctgacagcctggcagatttagccaaa
ctcagcaaggacaagctcgcagaaatactggaaaatgcgaacaatgctaagatactgtac
gagtttctgcataatgttgctgatgttcctgctccagtgcagaggaaaaaaaagacatca
tag
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