Hippoglossus stenolepis (Pacific halibut): 118101333
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Entry
118101333 CDS
T08308
Symbol
lrp6
Name
(RefSeq) low-density lipoprotein receptor-related protein 6 isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04150
mTOR signaling pathway
hsp04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
118101333 (lrp6)
04150 mTOR signaling pathway
118101333 (lrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118101333 (lrp6)
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
118101333 (lrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
DUF5050
SGL
EGF_LRP2
EGF
Motif
Other DBs
NCBI-GeneID:
118101333
NCBI-ProteinID:
XP_047194433
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All DBs
Position
22:18241386..18269956
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AA seq
1621 aa
AA seq
DB search
MGVVLRSVLLCSFCFLIRAVPLLLYANRRDLRLVDAAHEKANATVVVGGLEDAAAVDYVY
SHGLIYWSDVSEEAIKRTVFNQSGASTVQTVVQGLASPDGLACDWLGRKLYWTDSETNRI
EVAELDGSLRKVLFWQELDQPRAIALDPERGFMYWTDWGEIPKIERAGMDGTNRSMIIDK
EIYWPNGLTLDYSLQKLYWADAKHNFIHRANLDGSSRQEVVKGELPHPFALTLYEDTLFW
TDWNTHSIHSCQKQTGTDQRIVHSDIFSPMDIHVFSPKRQPLLNSPCSLNNGECSHLCLL
SPMKPYYQCACPTGVQLLEDGTTCRDGATRMLLLARRTDLRRISLDTPDFTDIIMQVDDI
RHAIAIDFDPVEGYIYWTDDDVKAIRRSLLDGSDAQFVVTSQVNHPDGIAVDWIARNLYW
TDTGTDRIEVTRLNGTMRKILISEDLDEPRAIVLDPVAGYMYWTDWGEVPKIERADLDGL
ERVVMVNTSLGWPNGLALDYDDRKIYWGDAKTDKIEMMNMDGTGRRVLVEDKLPHIFGFT
LLGDFIYWTDWQRRSIERVHKRTAEREIIIDQLPDLMGLKATYVHQSFGTNPCAENNGGC
SHLCLYKPSGVQCGCPIGLELIADMRTCIVPEAFLLFSRHTDIRRISLETNNNNVAIPLT
GVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL
YWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGYMYWTEWGGKPKIDRAAMD
GTGRSTLVADVGRANGLTIDYAERRLYWTDLDTTLIESSNMLGQEREVIADDLPHPFGLT
QYQDYIYWTDWSQRSIERANKTSGQNRTVIQGHLDYVMDILVFHSSRQGGWNACASTNGH
CSHLCLAVPVSSFVCGCPAHFSLNYDNKTCSAPTSFLLFSQKTAINRMVIDEQQSPDIIL
PIHSLRNVRAIDYDPLDKQLYWIDSKQNVIRRAQEDGNQSMTVVASSLGGPSQGLQIYDL
SIDIYSRFIYWTSEVTNVINVTRTDGSRVGVVLRGEHDKPRAIVVNPERGYMYFTNLLER
SPKIERAALDGTEREVLFFSGLGKPVALAIDNEVGKLFWVDSDLRRIESSDLSGANRIVI
ADSNILQPVGLTVFGNHLYWIDKQQQMIERIDKTTREGRTKIQARIGYLSDIHAVHELDM
REYSKHPCTWDNGGCSHICIVKGDGTTRCSCPVHLVLLQDELSCGEPPTCSPEQFSCTSG
EVDCIPQAWRCDGYAECDDKSDEEDCPVCSESEFQCDSRQCIDLSLRCNGEFNCQDRSDE
NKCEGVTVRCPPDQFTCSNGLCIGKHKKCDNNMDCTDNSDELGCYPTEEPPSPPNTTIGA
IVAVVMALFVVGAVYFVCQRVLCPQMKDDGETVTNDFVVHGPSSVPLGYVPHPSSLSSSL
PGMSRGKSVIGSLSIMGGSSGPPYDRAHVTGASSSSSSSTKGTYFPPILNPPPSPATVRS
QYTMEFGYSSNSPSTHRSYSYRPYTYRHFAPPTTPCSTDVCDSDYTPGRRAPPKSSATAA
AKGYTSDLNYDSEPFPPPPTPRSQYLSAEENCESCPPSPYTERSYSHHLYPPPPSPCTDS
S
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcgtgctgcggagcgtgttgttgtgtagtttctgtttcctcatcagagccgtg
ccgctgctgctgtatgcaaatcgacgggaccttcggctcgtggacgcggcacacgaaaag
gccaacgccacggtggtggtgggagggctagaagatgccgcggccgtggactacgtctac
tcccacggcctcatctactggagcgacgtgagcgaggaggccatcaaacgcactgtcttc
aaccagtcaggggccagcacggtccagacggtggtgcagggtttggcctccccggacgga
ctggcgtgcgattggttagggaggaaactttactggacggactcagagaccaatcggata
gaggtggcggagctggacgggtctctgaggaaagttttgttctggcaggagctggaccag
ccgagggccatcgctctggatccagaacgagggttcatgtactggacggactggggcgag
atcccaaagatcgagcgggcggggatggacggaaccaatcgatcgatgattattgataag
gagatctactggcccaacggactgacgctggactacagtctacagaagctgtactgggcc
gacgccaaacacaacttcatccaccgcgccaacctggacggttcctccaggcaggaggtg
gttaaaggagagctgcctcaccccttcgccctcaccctgtacgaggacactctgttctgg
accgactggaacactcactccatccactcgtgtcagaaacagaccggcaccgaccagagg
atcgtccactcggacatcttctcgcccatggacatccacgtcttcagccccaagagacaa
cccctcttgaactctccctgctcgctgaacaatggagaatgttctcacctctgcctcctg
tctccgatgaagccgtactatcagtgtgcctgtcccaccggagtccagctgctggaggac
gggacgacctgcagagacggtgcgactcggatgctgctgctcgcgcgacgcacagacctg
cggcgaatctccttggacacgccggacttcaccgacatcatcatgcaggtggacgacatc
cgccacgccatcgccatcgacttcgacccggtggagggctacatctactggacggatgac
gacgtgaaggccatccgccgctccctactggacggcagcgacgcccagttcgtggtcacg
tctcaggtgaaccaccccgacggcatcgcggtcgactggatcgcccgaaatctgtactgg
accgacacaggaacggaccgcattgaggtgacccggctcaacgggaccatgcggaagatc
ctgatctctgaagacctggacgagcccagagccatcgtgctggaccctgtggccggctac
atgtactggaccgactggggcgaggtgccgaagatcgagcgagcagatctggacggactg
gagcgagtggtgatggtgaacacttcgcttggttggcccaacggcctcgcgctcgactac
gacgatcgcaaaatctactggggagacgccaagactgacaagattgagatgatgaacatg
gacgggacgggcagacgggtgctggtggaggacaaacttccgcacatctttggcttcacg
ctgcttggtgacttcatctactggacggactggcagcgtcgcagcatcgagcgcgtccac
aaacgcacggcggagagagagatcatcatcgaccagcttcccgacctcatgggactcaag
gccacatacgtgcaccagtcgttcggtacgaacccgtgtgccgagaacaacggcggctgc
agccacctctgcctctacaagccttcaggcgttcagtgcggctgtcccatcggactcgag
ctcatcgccgacatgaggacctgcatcgtccctgaggccttcctactcttctcccgccac
acggacatccgccgcatctccctggagaccaacaacaacaacgtggccatcccgctcact
ggcgtcaaggaggcgtccgcacttgacttcgacgtcaccgacaaccgcatctactggacg
gacatcactctgaagaccatcagtcgggccttcatgaacggcagcgctctggaacacgtg
gtggagttcggtctggactacccggagggaatggcggtggactggctggggaagaacctg
tactgggccgacaccggcaccaatcgtatcgaagtggccaaactggacgggcagcaccgt
caggtcctggtctggaaggatctggacagtcctcgagctctggctctggatcccgctgaa
ggctacatgtactggaccgagtggggcgggaagccaaagatcgaccgagcggcgatggac
gggacgggtcggagcaccctggtggctgacgtcggccgagccaacgggctcaccatcgac
tacgcagagcggcgcctctactggaccgacctggacactacgctgatcgagtcgtctaac
atgctcggtcaggaacgtgaggtgatcgctgatgacctgcctcacccgtttggcctcacc
cagtaccaggactacatctactggacggactggagccagcgcagcatcgagcgagccaac
aagaccagtggccagaaccgcaccgtcatccagggccacctggactacgtcatggacatc
ctggtgttccactcgtcccgacagggcggctggaacgcctgcgcctccaccaacggacac
tgctcccatctgtgcctcgccgtccctgtcagcagcttcgtctgcggctgccccgcccac
ttctccctcaactacgacaacaagacgtgcagcgctccgacgtccttcctgctcttcagt
cagaaaacggccattaatcggatggtgattgacgagcagcagagtcccgacatcatcctg
ccgattcacagcctgaggaacgtccgcgccatcgactacgacccgctggacaaacagctg
tactggatcgactccaagcagaacgtgatccgccgagcgcaggaggatgggaaccagagc
atgacggtggtggcgagctcgctgggcggacccagtcaggggctgcagatctacgacctg
agcatcgacatctacagccgcttcatctactggaccagcgaggtcaccaacgtcatcaac
gtcacccgcacggacggcagccgagtgggcgtggtgctgaggggcgagcacgacaaaccg
cgcgccatcgtggtcaacccggagagagggtacatgtacttcaccaacctgctggagcgc
tcgccaaagatcgagcgggcggcgctggacggcacagagcgcgaggtgttgttcttcagc
ggtttggggaaacctgtcgctctggccatcgacaacgaggtggggaagttgttctgggtc
gactcagacctgcgacgaatcgagagcagcgacctctccggagccaatcggatcgtgatc
gcagactccaacatcctgcagccggtcgggctgacggtgttcgggaaccatctctactgg
atcgacaagcagcagcagatgatcgaacgcatcgacaagacgacgcgagagggacgcacc
aagatccaggctcgcatcgggtacctgagcgacatccacgccgtgcacgagctcgacatg
agggagtacagtaaacatccgtgcacgtgggataacggcggctgctcccacatttgcatc
gtgaaaggcgacgggacgactcgctgctcgtgtcccgtccacctggtgctgctgcaggac
gagctctcctgtggagagcctccgacctgctccccggagcagttctcctgcacgtcgggc
gaggtcgactgcatccctcaggcctggaggtgcgacggttacgccgagtgcgacgacaaa
agtgacgaggaggactgtcccgtctgctccgagtccgagttccagtgcgacagtcgtcag
tgcatcgacttgagtctgcgctgcaacggagagttcaactgtcaggaccgatcggacgag
aacaagtgtgaaggtgtgacagttcgttgtcctccggatcagttcacctgctcgaacggt
ttgtgcatcgggaaacacaagaagtgcgacaacaacatggactgtacggacaactcggac
gagctcggctgctatccgactgaagagccaccttctccacccaacaccaccatcggcgcc
atcgtggctgtggtcatggcgttgttcgtggtcggcgccgtgtatttcgtgtgtcagcgc
gtcctctgtccgcagatgaaggatgatggcgagacggtcacaaatgattttgtggttcac
gggccatcgtctgtgccgctgggctacgtaccgcatccgagctcgctgtccagctccctg
ccagggatgtccagagggaagtctgtgattggttccctcagcatcatgggcgggagcagc
gggccgccgtacgaccgcgcccacgtcaccggggcgtcgtccagcagctcgtcaagcacc
aagggcacctacttccccccgatcctgaatcctcctccgtctccggccacagttcgctct
cagtacacgatggagttcggttattcctccaacagtccgtcgacccaccggtcgtacagc
taccggccctacacctatcgccacttcgccccgcccaccaccccctgcagcaccgacgtg
tgcgacagcgactacacgccgggacgccgggcgccgcccaagtccagcgccactgccgcc
gccaagggctacaccagcgacctcaactacgactcggagcctttcccgccgccgccgacg
ccccgcagccagtacctgtcagcggaggagaactgtgagagctgcccgccgtcgccttac
accgagcgcagctactcgcaccacctctacccgccgccgccttcgccctgcacggactcc
tcgtga
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