Hippoglossus stenolepis (Pacific halibut): 118101343
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Entry
118101343 CDS
T08308
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118101343 (pdzrn4)
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118101343 (pdzrn4)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118101343 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
GRASP55_65
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
118101343
NCBI-ProteinID:
XP_047194627
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All DBs
Position
22:9541896..9556519
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AA seq
835 aa
AA seq
DB search
MVTSGFKKLSHPKLKALKQQFTNRWVTSQWVATWCKGTGSQVNGRDFSKVDHDQAVAEAI
RRDPIVVQVLRRTPNTVAGAVPHSGMPQDVCVIDVCTQTDITFEHIMALAKLRPATPPVP
DICPFLLSDSCHSIHTMEHEFYECPEYLSNTPAEVERTEEYEYEEVELCRQNNQEKLGLT
LCYRTDEEEDTSIYVSQVEPNSIAARDGRIKEGDRILQINGCEVQDREKAVAMLSNEEAR
SIVLLVTRPEIQLEEEEVWLDDEQQELVEELKMEILEERRKQKEHSFDRGDEHQAEEEMT
TDTATCSSNNQDSGFGRSTDSPEHQPLLARLHRRSPAHCLRDRWQAEHPHTRHGSGQDTQ
SQRIMSKRQGQEGVLSIRNSGGGVLGLENRFQQLLELKCQIRNGGECGVYSIRHSIECSL
TEQGVEEADGGDSEGGGGGMEHELRMLNDELRSIELECQSIMQAHQLRQTHNLDPSQPAP
CSPGWSPKDTHKRHGRLADIHEHPERSDSDKLREKDSSSAYNTAESARSTPLGMERSPDH
SLQRHISITNQKNLRLASSTPSSPIPIPKPHSTPSHSRPADPGLVISSSPDQSNPSRSES
DPALPADDERCEKKGRTRESRRALPYGCSYQTTPYQGQGGSRQLQSYMQLLQQHSSLEYS
QSQLSLLSVCRDPVHRSGRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREER
SGGMTTDDDAMSEMKMGRYWSKEERKQHLARAREQRKRREFMQKSRLECLKEGPASGAEG
RKEINILELSHKKMMKKRNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggttacttctggtttcaaaaaactaagtcatcccaaactcaaggctctaaaacagcag
ttcacaaaccgatgggtgacgtcacagtgggttgctacttggtgtaaaggtactggatcc
caggtaaacggacgtgacttctccaaggtcgaccatgaccaggcggtggcggaggccatc
aggcgagaccccatcgttgtccaggttctccggcgaacccctaacacagttgcgggggcc
gtcccacacagcggcatgccacaggacgtgtgcgtcatcgacgtttgcacacagacggac
atcaccttcgagcacatcatggcactggccaagctccggcctgcgaccccacccgtccct
gacatctgtcccttccttttgtctgacagctgtcattccatccacaccatggagcacgag
ttttatgaatgtccagagtacctgtctaacacgcctgcagaggtggagaggacggaagag
tatgaatacgaggaggtggagctgtgtcggcagaacaaccaggagaagctcggcctgaca
ctctgctacaggaccgacgaggaggaggacaccagcatctatgtcagccaggtggagcca
aacagcatagcagcgagagacgggcgcatcaaggaaggagatcgtattttacagataaat
ggctgtgaggtgcaagacagagagaaagccgtggccatgttatcaaacgaagaagcaaga
agcatcgtgctgctggtgacgagaccagaaatccagctggaggaggaggaggtatggctg
gatgacgagcagcaggagctggtggaggagctgaagatggagatcctggaggagaggagg
aagcagaaggagcatagttttgacagaggggatgagcatcaagctgaagaagagatgaca
acagacacagctacgtgttcctccaataatcaagacagcggctttggacgcagtacagac
agtccggagcaccaacccttgcttgccagactacacaggaggagcccggcccattgcctg
agggaccgatggcaggcagagcatccgcacacaaggcatgggagtggacaggacacccag
agtcaaaggataatgtccaaacgtcaaggccaagaaggggtactcagtattcgcaatagt
ggaggtggggtcttaggattagagaatcgattccagcaacttctggagctcaagtgtcaa
atccggaatggaggcgagtgtggggtgtactctattcgacacagtatagagtgtagcctc
actgagcagggagtagaggaagcagatggtggggacagtgagggaggcgggggaggtatg
gagcatgagttgagaatgctgaatgacgaactacgaagtattgagctggagtgccagagc
atcatgcaggcgcatcaactccgtcagacacacaatctggacccctcacagccggcaccc
tgctcaccaggatggagccccaaagacacgcacaagcggcacggcaggttggccgacatc
catgaacatccggagaggtcggacagcgataagctaagggagaaggacagctccagtgcc
tacaacacagctgagagtgcacggtcgacaccgctaggtatggagaggtctcctgaccac
tcgctacagagacacatcagcatcaccaaccagaaaaacctcagactagcctcctccaca
ccctcaagccccatccctatccccaaaccccacagcacccctagtcatagcagaccggca
gacccaggcctggttatctccagcagcccagaccagagcaacccctccaggtctgagtcc
gaccctgccctgcctgcagatgatgagaggtgtgagaagaaagggaggaccagagagtcg
aggagagcacttccctatgggtgttcataccaaacaaccccctatcaaggccaaggagga
tccaggcaactgcagagctacatgcagctgctccaacagcactcatccctggagtactcc
cagagccagctgagcctgctcagcgtctgtagagatcctgtgcaccggagtggacgcccg
ggggagccccgtctggagtggaaggtcaaagtccgcgctgacggcacgcgctacgtggcc
cggaggcctgcccgtgaccgcatcctgagggagcgggcgctgaggatccgagaggagagg
agcggaggcatgaccacggacgatgatgccatgagcgagatgaagatgggccgctattgg
agcaaagaggagaggaagcagcacttggcgcgggccagggagcagaggaaaaggagggag
ttcatgcaaaagagccgcttggagtgtcttaaagagggaccggccagcggagccgagggc
aggaaagagatcaatatcttagagctcagtcacaaaaagatgatgaagaaacgaaacaaa
aagatactcgacaactggatgacgatccaggagctgatgagccacggggcccgagtccct
gagggctcgaaagtacacaacgccttcctgtctgtcacaactgtctaa
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