Hippoglossus stenolepis (Pacific halibut): 118101393
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Entry
118101393 CDS
T08308
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hsp03009
]
118101393 (utp20)
Ribosome biogenesis [BR:
hsp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
118101393 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_GCN1
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
118101393
NCBI-ProteinID:
XP_035003009
LinkDB
All DBs
Position
22:complement(6228174..6250512)
Genome browser
AA seq
2856 aa
AA seq
DB search
MKIKSKSSYHKSENTFRFLTFAERLSNVNINVVHRIDRTGSYAEEVETYFSEGLTKWRDL
NLTEHFTTFSKEVSNNSQSFNMLVFHQKTIVESLKTHLAVKNSLAYQPLLDLVVQLARDL
QTDFYPHFPDFFVLITSLLDTKDTEVLEWAFTCLSYLYKYLWRVMVKDMTNIYSLYSTLL
SHKKEHIRKFAAESFSFLMRKVPDLDALLTHVFSDLQQHPDKAEGAGQLLFEMCKGVRHM
FHSAAANAFPVALRKLGPTTNPGVSLPWDTIRDALDHMAQVAADHVEREHFLVLWESLQV
SVVEVLGVVEAGGEEADQASDQLERLLFILHTLVSHRDGAKVTKPEAVCQTVLRLIQSSA
LSVPCSRLLLQIISSLLLGENISLPKSLIQETIQKVFGSTVGEDLILEFSKEMFTMKQFE
QLFLPCLLRFTAGLFSSGDALSRHCGLEVLVSLILAKAPPPTDGSMAFETYPLLFTGQST
GSVLSSKEEGQESSTAPEQPTVPELVLSLIKFPEEQNQTIADLSLPWSALMLLPHIRPLS
PVTVVPAVSALLNHLLCQIDTEKMGKAGLFVARQALSCLLSLDGSAQLLSLVTVDKVTSI
FRRFPSDLSALLLGDLYYTRLSLSGVSEHLSHNALLEVFHILHANLSSNISKIRLLTLRI
LSQFEAELPPPPEGEEAVDVQPVFAVCLQAELVPASVQDYRDKLLHLRKLRHDLVQRSLP
QGPAGSFQQVPLRYLIAMLFVNFRPLWDAVIELLVSHARGMDNKEFWVVYHEHLEMVAGM
AEKELRDCDEDDDVSDEEQESSSQSEPGCNVIESGDVGVLFLEELKLTSDPNDRTDFPNF
RSLLWRAMTQFPERVEPRSRELSPLLLRFIRNEFYPADLMVAPTQDLRKRNAAAQEDAEM
AVDEEEDEEQDVEEKGPKQKKARPRRAASKQLIIHLRVFAKFTNPRSLYLEASLGELYNQ
LLCHQDQQIQGVALECVLTYKDPNIVPYKENLERLLQDKHFKEEIVHFNISEETGVVEAS
HRVKLIPLLMRILFGRLRSKAGSKFQGKSSTASRSSIILRFLAGCQAEELGIFVDLLLEP
VCHHSQGSCLEAVERAVAQTDMSAILPLGRQHSLLNIINVVIQKLGHLINIYLPKLLQIL
LCVTASVSNVLDKRDQLRAGCISPLKNLRRLGVLRVLDFFDVFDSYSYSPDELDAVFQAV
VWPQVCRLPTESINSPSPLLKLIHVWCKNARYFPLLAKHRSEHPECDVLMNVFALLSAKN
ASQPIINIVLDIVESLATTKDFVASEMETEMEMETELTVNNSVFSQPAEGALVTADSLTQ
GSRLLLPHISTLLRYLTSVVRNSDRLKKKKFRAQVAKELNILSKVSRFVSETEQSSVLIS
LLLMYLQKGNNPQETEIDVLATVQNLLRQCVQPAVFLSPLSKLFSVIHNKLPRQALTNVF
QTLSDLEPSLKYITDLAAKLNAFDSRHLDEIHFDLRLTAFQDATRCVKDMETLDLDYINT
IIYNCFHTYEIGDMSLADNATMCLSTIITQLAAVGPGEQIYKDIVQHTILDAVHKGLRSK
TESVQHDYTNVLACLVKTFPSKKEFRDLVQLTDYNDLESDFFEHMKHIQIHRRGRALRKL
AKQLTEGTVVMTSRSLQNYIMPYAMTALLDEKMAKHDNMTSASVEVVGAVCRRLTWSKYL
YYLKHFVHILQTSQVEQKLAVNLLVTVLEAFHFDHQTFSREMEAAKAREAVSVSAEADDV
DEAAADESDASDDEKEMETDSKTAPADVPMEVDNVGESNVVSKEAATAKAKGPVAPKPVA
VTSGLPQSKDELETLISAIHRTVNDSVLPRLHRCLTAKVKRDDEHKAVRSKDVKEEEVSR
IPIAFAMVKLMQTLPPHIMEANLPGILIKVCVHLRNRFQEVRDVARATLVKIIETLGFRY
LHYLLKEMQSVLVKGYQVHVLTFTVHRLLFSLSPTLKSGDLDPCMNMLIDIFNNELFGAV
AEEKEVKGIVSKLMEARHSKSMDSYELLAKYSSKDSITKLMLPMKEILENSSSLKVCNRV
GAVLRRLILGLLVNGGMTPQDILLLSHGLVSQSLPLLTMRDREKTSAKPPPDPRLPPPSC
LLLPPTPKRGGQKAHISSRTNMHILVDAGLKLLHLSLRKSIVTSAEASTLEMLDPFVLLL
LECIDSMHIKVITEALVGFSWLLKFPLPAVGQNAEQLTKQLFVLLKDYSKAGAGRGENYL
LVQSCFKAITILVKSVKSNNISETQLQVLLGYAEEDIYDQSRQATAFGLLKAILSRKLVV
PEMEEVLTKVAKLSVNGSNAMIRIHCRQIYLKYLLDYPLGRKLRHHMSFVVAQLQYEHDV
GRESVLEMLAFIFQTFPEKLLSKYSGLFFAPLALVVVNDDSARCKKMAAMAIKTLLTKLE
LNNKNTLYSLVNTWMSAEKASLRRLGAQICGLFVEVEGEKFARRLNDLLLLLEKEINPDN
YEDIEEEQDEKGADRLLFSYLTLLTKLCKHCGLLELRKPHDTLLNIWGHIEAHLRYPHCW
VWLTASQLYGQMFASQQAEQLVAVWRGEGRDAASQSSTTAFITSNLDKKMRELALSFSLQ
LQSKFLDTASGEQVIKNLLFVGKVIYLISPESDVMSTEEEVKEIEEEQQRENGDEVEGEG
KKEEIEKEEEEQNEKEEEKEKEEEEEEEKEKEEEEEEEDEDDKDDRAPSLLWLMKKLCLM
AKREAAHTPKVHVKRTSVFKFLGAIAMDLGEERLGPYLTTIISPLYRELDSTYAEQDPTL
KNLAQELIELMKRKVGLQRFSLAFSAVQKEFTQRRVARKRHRAMQAVANPEIAAKKKIKK
HKNKIEAKKRKIEFLRPGYKAKRHRSHALRDLAIVQ
NT seq
8571 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaagtccaagtcctcgtatcacaagtcggagaacacgttcaggtttctcact
tttgctgaacgactttccaacgtcaacatcaatgtcgtccatcgcatcgacagaactgga
tcttatgctgaggaagtagaaacatacttttcggaagggctgacaaaatggagagacctc
aacttgaccgagcatttcacaacattctccaaagaggtgtccaacaacagccagtcgttc
aacatgctggttttccaccagaagacgatagtggagagtctgaaaacacacctggctgtg
aagaacagcctggcctaccagcccctgctggacctggtggttcagctggccagagacctg
cagactgacttctatcctcacttccccgacttcttcgttctcatcacgtccctgctggac
accaaggacacagaggtcctggagtgggctttcacctgcctctcctacctctacaagtac
ctgtggagggtcatggtgaaggacatgaccaacatctacagtctgtacagcacactgctg
tcacacaagaaggaacatatccgcaagtttgccgcagagagcttctcttttttgatgaga
aaagttccagatctcgacgccctgctcactcatgtgttctcagacctgcagcagcaccct
gacaaggcagagggagcaggtcagctgctgtttgagatgtgcaaaggagtcagacacatg
ttccactctgccgctgctaatgctttccctgtggctttgcggaagctcggccccacaacc
aacccgggagtctctctgccctgggacaccatcagggacgctctggatcacatggcccag
gttgcagccgatcacgtcgaaagagaacacttcctggttttatgggagtccttacaggtc
agtgtggtggaggtccttggtgtggtggaggcggggggagaagaggcagaccaggcgtca
gatcagctggagcggctgctgttcattctccacaccctggtgtcccacagagacggagcc
aaggtcaccaagccagaagccgtctgccagacggtgctgcggttgattcagagctcggct
ctgtcggttccctgttcccgcctcctcctccagatcatctcgtccctgctcctcggggag
aacatcagtctgcccaagtccctcattcaggagaccattcaaaaggtgtttggcagcaca
gtgggagaagacctgattctagagttcagcaaggagatgttcaccatgaaacagtttgag
cagctcttcctcccttgcctgctgcgcttcactgctgggttgttcagtagcggagacgcc
ctgtctcgccactgtggcctggaggtgctggtcagcctgatcctggctaaagccccgccc
ccgacagacggctccatggcctttgaaacgtacccactgctcttcaccggacagagcaca
ggcagtgtgctgagcagtaaggaggagggtcaggagagcagtacagcaccagagcagccg
actgtgccggagctggtgctgtccctcattaaattccctgaggagcaaaaccagaccatc
gctgacctgtctctgccttggtccgccctgatgctgctgccacacatcagaccactgtct
ccagttaccgttgttcctgctgtgagcgctctcttaaaccacctcctgtgtcagattgac
acagagaaaatgggaaaagccggtcttttcgtggccagacaggccctgagctgcctcctc
agtctggacggctctgcccagctcctctctctggttactgtggacaaggtcacctcaatc
ttcaggaggtttccctctgacctgtccgccttgctgctcggagacctctactatacccgc
ctgtcactcagcggcgtttcagagcatctatcccacaatgcactgctggaggtcttccat
attctgcacgccaacctctcctccaacatctctaagatccgtcttctgactctgaggatc
ctctctcagtttgaggcggagctccctccaccgcctgagggtgaggaggccgtggacgtg
cagccggtgtttgcagtttgcctgcaggcagaactggtgccggcatcagtgcaggactac
agagacaagctgcttcacctccggaagctcagacacgacctggtgcagcgcagcctgcca
caggggccggccggatccttccagcaggtgcctctgcgttatctcatcgcaatgctgttc
gtcaacttcaggcccctgtgggacgcagtcattgaacttcttgtgagccatgccagaggg
atggacaacaaggagttctgggtggtctatcatgaacatctggagatggtggcagggatg
gcagaaaaggaactgcgggactgtgatgaagatgacgacgtcagtgatgaagagcaagag
tccagttctcagagtgagccgggctgcaacgtcattgaaagtggggacgtgggggtgctg
ttccttgaggagctgaagttgaccagtgaccccaacgaccggacggacttcccaaacttc
cgcagcctgctgtggcgcgccatgacccagtttcctgagagagtggagccacgcagccga
gagctgagtcctctgctgctcaggttcatcaggaatgagttttatcccgccgacctgatg
gtagcccccactcaggacctgaggaaaaggaatgctgctgcccaagaggatgctgagatg
gctgtggatgaagaggaggacgaagagcaggatgtggaggaaaaaggcccaaagcagaag
aaggcacgtccacggagagctgcttctaaacagctgattatccatttgagagtttttgcc
aaattcaccaaccctcgttcgctctacctggaggccagtctcggtgagctctataaccag
ttgctctgccatcaggaccagcagattcagggagtggccctggaatgtgttctcacatac
aaagacccaaacattgtaccatacaaagagaatcttgagaggcttctgcaggacaaacac
ttcaaggaggagattgtccatttcaacatttctgaggagacaggagtggttgaggcttcc
cacagagtcaaactgattcctctgctcatgaggatcctgttcgggcgtctgcgcagcaaa
gcgggcagcaagttccaggggaaatcctccaccgcctcccgctcctccatcatcctgcgt
ttcctggctggctgccaggctgaggagctgggaatcttcgtcgacctgctgctggagccc
gtctgccatcacagccaaggttcctgcctggaagcggtggagagggccgttgctcagaca
gacatgagcgccatcctgccgctgggccgtcagcacagcctcctgaacatcatcaacgtg
gtgatccagaaactgggccacctcatcaacatctacctgcccaaactgctgcagatcctt
ctgtgcgtcaccgcctccgtgtccaacgtcctggacaaaagggaccagttgagagcaggt
tgcatcagtcctctgaagaacctgaggcgactcggagtcctgagggtcctggactttttt
gacgtctttgactcctacagctacagcccagacgagctggatgctgtcttccaggctgtg
gtctggcctcaggtgtgtcgtctgcccacagagagcatcaactctccgagccctctgctg
aaactcatccatgtgtggtgcaaaaatgccaggtacttcccccttctggccaagcacaga
tccgagcatccagagtgtgacgtcctcatgaacgtctttgccctcctctctgccaagaac
gcttcccaacccatcatcaacattgtattggacatagttgagtctctagcaacaaccaag
gactttgttgcctcagagatggagacggagatggagatggagacggagctgaccgtgaac
aacagtgtattctcgcagcctgcagagggcgctctcgtcactgcagattcattaactcag
ggctccagactgctgctgcctcacatctccaccctgctgcggtacctcacctccgtcgta
cgcaacagcgaccggctcaagaagaagaagttcagagcgcaggtggccaaggagctcaac
atcctctccaaggtcagtcggtttgtgagcgagacggagcagagctcagtgctcatcagc
ctgctgcttatgtacctgcagaaaggaaacaaccctcaagagacagaaatcgacgtcctg
gccaccgtacagaacctgctgagacagtgtgtgcagcccgccgtgttcctgagcccgctc
agcaaactgttctccgtcatccacaacaagttgccccggcaggccctcaccaacgtcttc
cagactctgtcagatctggaaccttccctcaaatatatcactgatttagcagcaaagctt
aatgcgtttgacagtcgtcacttggacgagatccacttcgacctgcgtctgacggcgttc
caagacgccaccagatgcgtcaaagacatggagactctggacctggactacatcaacacc
atcatttacaactgtttccacacctacgagatcggtgacatgtcgctggcagacaacgcc
accatgtgtctgtctacgatcatcacccagctggcagcagtcggacctggagaacagatc
tacaaggacatcgttcaacacaccatcctggacgctgtgcacaaggggctccgcagcaag
acagagagtgtgcagcatgactacactaacgtgctcgcctgcctggtcaagaccttcccc
tccaaaaaagagttcagagacctggtgcagctcacagactacaatgacctggagtctgac
ttctttgagcacatgaagcacatccagatccaccgtcggggccgagcgctgaggaagttg
gccaagcagctgaccgaaggcacggtggtgatgacgtctcgctccctgcagaattacatc
atgccgtacgccatgaccgccctgctcgatgaaaagatggccaagcatgacaatatgacg
tcagcatcggtggaggtggttggcgcagtgtgtcgcagactgacctggtccaagtacctg
tactacctgaaacacttcgtccacatcctgcagacttcgcaggttgagcagaaactggct
gtgaatttgctggttacagttctggaggcttttcatttcgaccaccagaccttcagcaga
gagatggaggcagcgaaggccagagaagctgtgagtgtctcagccgaggcagatgacgtg
gatgaagctgcagcggacgaatccgacgcaagtgatgatgagaaggaaatggagacggac
agtaagactgctccggctgatgttcccatggaagtggacaatgttggagaaagcaatgtc
gtctcaaaggaagcggccaccgctaaagccaagggaccagtggctcctaaacctgtggca
gtgaccagcgggctgccacagagcaaagacgagctggagactctgatcagcgccatccac
cggactgtgaacgacagcgtgctgcctcgtctgcacaggtgtctcaccgccaaggtgaag
cgtgacgacgagcacaaggcggtgaggtcaaaggacgtgaaggaggaggaggtgtcgagg
ataccgatagccttcgccatggttaaactgatgcagacgctgcctccgcacatcatggag
gccaatctgcccggtatcctgatcaaggtgtgtgtgcacctgaggaaccgtttccaggag
gtccgtgacgtggcaagagcaacgctggtgaagattattgagacgctggggttcagatac
ctgcattacctgctcaaagagatgcagagcgtcctggtgaagggttaccaggtccatgtt
ctaacattcaccgtgcaccggctgctgttttccctcagtccaaccctaaagagcggcgac
ctggacccgtgcatgaacatgctcatcgatatcttcaacaacgagctgttcggggccgtg
gccgaggaaaaggaggtgaaggggatcgtgtccaagctgatggaggcgcgacacagcaag
agcatggactcgtacgagctgctggccaagtactccagcaaggacagcatcaccaagctc
atgctgccaatgaaggagattctggagaattcatccagtctgaaggtgtgtaaccgggtg
ggcgcggtgctgcggcgtctcatcctgggtctgctcgtcaacgggggcatgacccctcag
gacatcttactgctgagccacggcctggtcagccagagtctgccgctgctcaccatgaga
gaccgagagaaaacgtcggctaagcctccccccgaccccagactgccccctcccagctgc
ctgctcctgcctccgaccccgaagagaggaggtcagaaagctcacatcagcagtcgaacc
aacatgcacatcctggtggacgccggcctcaagctgctccacctgagtctgaggaaatcc
atagtgacgtcggccgaggcctcgactctagagatgctcgaccccttcgtgctgctgctg
ctcgaatgcatcgactccatgcacatcaaggtaatcacagaggctctggtgggcttcagc
tggctgctgaagttccctctgccggcagtggggcagaacgccgagcagctgaccaagcag
ctctttgtcctgctgaaggattattccaaggccggagcgggccgcggggagaactacctc
ctggtccagagctgcttcaaggctatcaccatactagtgaaaagtgtcaaaagcaacaac
atttctgagacgcagctgcaagtgctgctgggatacgctgaggaggacatctacgatcag
tcccgccaggccaccgcctttggtctcctgaaggcgattctgtccaggaagctcgtggtt
ccagagatggaggaggtgctgacgaaggttgccaagctatcagttaacggcagcaacgct
atgatcagaatccactgtcgacagatctatctgaagtacctgctggactacccactgggg
aggaagctgaggcatcacatgtccttcgtggtggcacagctgcaatacgagcatgatgtc
ggcagggagtcggtgctggagatgctggcattcatcttccagactttccctgagaaattg
ctgtcaaagtacagcggcctgttcttcgccccgctcgccctggtcgtggtgaacgacgac
tcggcgcgctgtaaaaaaatggcggccatggccatcaagaccttgctaaccaagctggaa
ttgaacaacaagaacaccttgtactccctcgtcaacacatggatgagcgcagaaaaggcg
agcctgcggcgtctcggggctcagatttgcggcctgtttgtggaggtggagggggagaag
tttgcccgtcgtctgaacgacctgctgctgctgctggagaaagagatcaaccccgacaac
tacgaagacattgaagaggagcaggatgagaaaggagcagaccggctgttgttcagttat
ctgactctcctcaccaaactctgcaaacactgcggcctgctggagctccgcaaacctcac
gacacactccttaacatctggggtcacatcgaagcccatctgcggtaccctcactgctgg
gtgtggctgacggcctcgcagctgtacggccagatgttcgcatcccagcaggcagaacag
ctggtcgccgtttggagaggagagggcagagacgctgcctcccagtcgtcaaccacagcc
ttcatcaccagcaacctggacaagaagatgagagagttggcgttgtcgttcagcctccag
ctacagtccaagttcctggacacagcatcaggagagcaggtgatcaagaatctgctgttc
gtcggcaaggtgatctacctcatttcccccgaatctgacgtcatgtccactgaggaagaa
gtgaaagagatagaggaggagcagcagagggagaatggagatgaagtggagggagaagga
aagaaggaggagattgaaaaggaagaagaggagcagaacgaaaaggaagaagagaaggaa
aaggaagaagaggaggaggaagagaaggagaaggaggaggaggaggaagaagaggatgaa
gacgacaaggacgatcgagctccgtctctgctgtggttgatgaagaagttgtgtctgatg
gccaagagagaggcagcacacactcccaaagtccacgtgaagagaacgagtgtgtttaag
ttcctgggcgctatagccatggacctgggggaggaacgtctgggcccgtacctgaccacc
atcatcagtcctctgtacagagagctggacagcacctacgcagaacaagaccccacgctg
aagaacctggcacaggagctgatcgagctgatgaagaggaaagtggggctgcagaggttc
tcgctggctttctccgccgtgcagaaggagtttacacagaggagagtggcacggaaacga
cacagagccatgcaggccgttgccaacccagaaatcgccgccaagaagaaaatcaagaag
cacaagaacaaaatcgaagccaagaagaggaagatcgagtttctacgacccggatataaa
gccaagaggcaccggagccacgcgctcagagacctggccattgtgcagtga
DBGET
integrated database retrieval system
