Hippoglossus stenolepis (Pacific halibut): 118101534
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Entry
118101534 CDS
T08308
Symbol
optn
Name
(RefSeq) optineurin
KO
K19946
optineurin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04137
Mitophagy - animal
hsp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118101534 (optn)
04137 Mitophagy - animal
118101534 (optn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118101534 (optn)
Membrane trafficking [BR:
hsp04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
118101534 (optn)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
118101534 (optn)
Autophagy
Mitophagy
PINK1-Parkin associated proteins
118101534 (optn)
Xenophagy
Cargo receptors
118101534 (optn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CC2-LZ
zf_C2H2_10
NEMO
EDR4-like_1st
Motif
Other DBs
NCBI-GeneID:
118101534
NCBI-ProteinID:
XP_047194544
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Position
22:complement(4498706..4505994)
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AA seq
539 aa
AA seq
DB search
MASGGPVINGDISRSPSLSGPLEDTLLQMNILIQENRDLKEALRQTNVMMKERFEGLSVW
REKQRDERNFLDNKLEEAHGRIEELTRDNQELSRRLEVVGRAGGGAPGGSQSAEVDALRA
HVARLQAEKNDLVAMNSELQLKADEDSQEDSFIEIIRVSDGGVDGVNNVCGTERSTRLDM
SMTASRLDSNKEVTVSQLLQLLRNETQRADQLKEELQASAARVTELRERKSNEDESTQTT
QPNITVTKEDSEMEAKTASEVENLKSQTMTLFKELQHAQSKLDEAEGMKKNLQDRYREVE
QDVATLRAQLVEKQVVQSENDRLKLQLDSMQAQSLMEQKKAGEERNTLGQLKDAYTKLFE
DYNELIEEEKKKKRESQLVKKDVVDELQVRLTAAEEALAVKQSKIDDMKQEIFMKESELE
TVSVFQAQAEVYSSDFYAERAAREKLHEERERLAAQLEFVKKQNSQLQDEMESLGRHSLN
EMQRRHVSVGGNQRGAGASLVGRGTDWQQGNIPEHACPKCNEILPDLDSLQIHIMDCII
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctggaggccctgtgataaacggcgacatctctcgctctcccagtctgtcgggc
ccgctggaggacacgctgctgcagatgaacatcctcatccaggagaaccgagacctgaaa
gaggccctgcgtcagaccaacgtgatgatgaaggagcgcttcgagggtctgtccgtgtgg
cgggagaagcagcgggatgagcggaacttcctggataacaagctggaggaggctcatggc
cgcatagaggagctgacccgcgacaaccaggagctgagcaggaggttggaggtggtgggg
agagctggaggaggagctccaggagggagtcagagtgcggaggtggatgccctgcgtgcc
catgttgctcgcctgcaggcggagaagaacgacctagtggccatgaactctgagctgcag
ctgaaggcggacgaggactcgcaggaggactccttcatcgagatcatcagggtctcggat
ggaggcgtcgatggcgtgaacaacgtgtgcggcacagagcgaagcacacgtctggacatg
agcatgacggcgtcccggctggacagcaacaaggaggtgacggtgagccagctgctgcag
ttgctgaggaacgagacccagcgggccgatcagctgaaggaagagctgcaggcttctgct
gccagagttacagagctgagggagaggaagagtaatgaagacgaatccacacagacgaca
cagccaaacatcacagtgaccaaagaggattctgagatggaagcaaagacagcatctgag
gtggagaatctcaagtctcagacaatgacgctgttcaaagagctgcagcatgctcagagc
aagctggacgaagcagaaggcatgaagaagaacctgcaggacagataccgggaggtggag
caggacgtggcgactctgagggctcagctggtggagaagcaggtggttcagtcggagaac
gaccggctgaagctgcagctggacagcatgcaggcccagagcctgatggagcagaagaag
gccggggaggagagaaacacattaggccagctgaaggacgcctataccaaactgtttgaa
gactacaatgagctcatagaggaggagaagaagaagaagagagagtctcagctcgtgaag
aaggatgttgtggacgagctgcaggttcgactgactgcagcagaagaagctctggcagta
aaacagagcaagattgatgacatgaagcaggagattttcatgaaagagtcggagctggag
accgtatctgtgttccaggcgcaggccgaggtctactcctccgacttctacgctgagcga
gcagcgcgggagaaactccacgaggagagggagcgtctggctgcccagctggagtttgtc
aagaagcagaactcgcagctgcaggacgagatggagtcactgggccggcactcactgaat
gagatgcagaggagacatgtgtctgtgggaggaaatcaacgtggagccggcgcatctctg
gttggaagaggtacagactggcagcaggggaacattcccgaacacgcgtgtcccaagtgc
aatgagatcctgccagacctggactccctgcagatccacatcatggactgcatcatctag
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