Hippoglossus stenolepis (Pacific halibut): 118101666
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Entry
118101666 CDS
T08308
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118101666 (sox5)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118101666 (sox5)
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Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
118101666
NCBI-ProteinID:
XP_035003484
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Position
22:6482587..6572659
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AA seq
788 aa
AA seq
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MLLLSRETDPYSSMLTEPELPQECNRMSSKRPASPYGGTDGDVTMATSRQRMEDEESEGL
GGVIHLPLVSYCSKVSPRSPANRSLDSPTNTDQDGTKGSSLSPYPQHNSTSPGKEEGGGG
GRACSDGGSAAGALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKD
KLLAMGSGHIGEIKGTPDSLAEKERQLMGMIGQLSSLREQLLAAHEEQKKLAASQMEKQR
QQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAA
AQQGFLMPPGFNYKPGCSDPYPLQLIPTTMAAAAAAAAATPGLGPLQLQQLYAAQLAAMQ
VSPGGKQHGGSMQSQGNLGRHSPPSNTHSHSDKGRSSPQQHKTKDSEGAQPLNLSAKPKA
SESKSPNSPPTSPQVPAAAAAKLGPAGSMKHSIAPSSIGGPPTRISSIADLLSSLSSTAY
LNDHEAVSKAFAEARQMKEQLKREQQVLDAKVAAVTNLSLNNGRTDKDKAALESLSQQLK
QQAEDKFSHAMLDFTMSGDSDGSPSVSDSRIFREARGRGTSEPHIKRPMNAFMVWAKDER
RKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR
TCLVDGKKLRIGEYKAIMRSRRQEMRQYFSVGQQGQLPLSSAGVVYPGALSMAGIPSPQM
PSEHSSMSSSPEPNANHHQNPHMPGLKGDEPRIKEEELRLDDSNGYDEFEYEDEEADYTS
DNENHITQ
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgttgtcgagagagacggacccttactccagcatgctcactgagcctgagcta
cctcaggagtgtaacaggatgtcttccaagcgaccagcctctccatatggggggacagat
ggagacgtaaccatggcaaccagcagacagcgaatggaggatgaggagagcgagggacta
ggcggtgtcatccacctccccctggtctcctactgcagcaaagtgtcccctcgttcgccc
gccaaccgcagcttggacagccccaccaacacggaccaggacggcactaaggggagctct
ctgagtccttacccccagcacaattctacctcaccgggcaaagaagaaggcggaggcggg
ggacgggcctgcagcgacgggggctctgccgcgggcgccctgggaaccccagagagacgc
aaaggcagcctggcagacgtggtggacacactgaaacaacgcaagatggaggagctgatc
aagaacgagccagaagaggcccccagcattgagaggctgttgtcgaaggactggaaggat
aaacttttggccatgggctcagggcacattggagaaattaaaggtaccccagacagcctg
gcggagaaagagcgccagctcatgggcatgattggtcagctgagcagcctgagggagcag
ctcctggcggcccatgaagagcagaagaagctggccgcctcgcagatggagaagcagagg
caacagatggagcttgccaagcagcaacaggaccagattgcccggcaacagcagcagctt
ctgcagcagcaacacaaaatcaacctcctgcagcaacaaatccagcaggtccagggccag
ctccctccgctgatgattcccgtctttcccccggaccagaggaccctggcggctgccgca
gcccagcagggtttcctcatgccccctggcttcaactacaagcctggctgcagtgacccc
taccctcttcagctcatccccacaacgatggctgctgccgccgctgctgctgctgccaca
cctggcctgggacccctacagctccagcagttgtatgccgctcagctggcggcaatgcag
gtctccccggggggcaagcagcacggaggcagcatgcagtcccaaggcaacctgggcaga
cactcgccacccagcaacacacactcacacagtgacaaaggccgcagctccccgcaacaa
cacaagaccaaggacagtgagggtgcacagccactgaacctgtcggccaagcctaaggca
tccgagagcaagtcacccaactcccccccaacttccccacaggtccctgctgccgctgct
gccaagctgggccccgccggttccatgaagcacagcatcgccccctccagcatcggagga
ccaccgaccagaatcagctcaatagcagacttgttgtcatcgctgtcctcaacagcctac
ctgaacgaccacgaggcggtgagcaaggccttcgccgaggcccggcagatgaaggagcag
ctgaagcgggagcagcaggtcctggacgcaaaggtggctgccgtcaccaacctcagcctc
aacaacggacgcaccgacaaggacaaggccgccttggagagtctgagtcaacagctgaag
cagcaggcggaggacaagttcagccacgccatgctggacttcaccatgagcggagactct
gacggctcccccagcgtgtcggactccaggatattccgggaggcccggggtcgcggcacc
agcgagcctcacatcaaacggccaatgaacgccttcatggtctgggccaaggacgagcgg
agaaagattctgcaggccttccccgacatgcacaactccaacatcagcaagatcctcggc
tcgcgctggaaagccatgaccaacctggagaagcagccatactacgaggagcaggctcgc
ctcagcaagcagcatctggaaaagtacccagactacaagtacaagccgaggcccaaacgc
acctgcctggtggacggcaagaagctgcgtattggcgagtacaaggccatcatgaggtcc
cgcagacaggaaatgagacaatatttcagtgtggggcagcagggccagctgcccttgtcc
tcagcgggcgtggtttacccaggtgccctgtccatggcggggataccctcaccccagatg
ccctctgagcactcaagcatgtccagcagccccgaacccaacgccaaccaccaccagaac
ccccacatgcccggcttgaagggggacgagccacgcatcaaggaggaggagctgcggctg
gacgacagcaacggctacgacgagtttgaatacgaggacgaagaggccgactacaccagc
gataacgagaaccatatcacccaatag
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