KEGG   Hippoglossus stenolepis (Pacific halibut): 118101820
Entry
118101820         CDS       T08308                                 
Symbol
kdm5a
Name
(RefSeq) lysine-specific demethylase 5A
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:hsp01009]
    118101820 (kdm5a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsp03036]
    118101820 (kdm5a)
Enzymes [BR:hsp01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     118101820 (kdm5a)
Protein phosphatases and associated proteins [BR:hsp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     118101820 (kdm5a)
Chromosome and associated proteins [BR:hsp03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    118101820 (kdm5a)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_5 GlgE_dom_N_S
Other DBs
NCBI-GeneID: 118101820
NCBI-ProteinID: XP_035003718
LinkDB
Position
22:7967392..7986046
AA seq 1748 aa
MSFAEFVPPPECPVFEPSWEDFSDPLGFINKIRPIAEKTGICKIRPPEDWQPPFACDVRN
FRFTPRVQRLNELEALTRVKLNFLDQIAKFWELQGSKIRFPHVERKTLDLYQLSKIVSSE
GGFEMVCKEKRWSKVASRMGFPSGKGAGSLLRSHYERILYPYELFQSGATLTGIQRLYDE
GDDGEEVDEGVGDEAVEEEEQDEEEEEEDKDGEGDATQTKDQLLPERRSRRLKSERENKE
PKGLKIFGASPKMVGLEIVSADDGFNKKQRHLKAQAFAIKMRPRKETLEVNFIDLYLCLV
CGRGDEEDRLLLCDGCDDSYHTFCLIPPLQDVPKGDWRCPKCVAEECSKPREAFGFEQAV
REYTLQSFGEMADHFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKEV
GSGFPVRDGKRRLLGDEEEYANSGWNLNNMPVLEQSVLTHINVDISGMKVPWLYVGMCFS
SFCWHIEDHWSYSINFLHWGEPKTWYGVPASAAEQLEAVMKKLAPELFDSQPDLLHQLVT
IMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPMGRQC
VAHYRRLHRYCVFSHEELLCKMAADPESLDVELAASVFKEMGDMMVEETKLRHAIREMGV
LSSEQEVFELVPDDERQCYKCKTTCFLSALTCTCSPDRLVCLHHAEDLCDCPLGNKCLRY
RYDLEEFPSMLYGVKTRAQSYDTWAKRVTEALAADQKNKKDLIELKVLLEDAEDRKYPEN
SLFRRLREMVKEAETCSSVAQLLLSRKQRHSGRLRSENTRNRTKLTVDELKAFVDQLFRL
PCIISQARQVKELLENVEDFHERAQAALSDEMPDSSKLQVLLDLGSGLDVELPELPRLKQ
ELQQARWLDEVRVTLADPHRVTLELMKRLIDSGVGLAPHHAVEKAMAELQEILTVSERWE
DKARGCLQARPRHSLVTLESIVLEARNIPAYLPNILALREALQKAKEWTCKVEAIQSGSS
YAYLEQLESLLARGRSIPVRLDPLTQVESQVAAARAWRERTGRTFLKKNSTYTLLQVLSP
RVDIGVYGNSKSKRKRVKELMEKERGGFDPDALSDLEESLEEVRDPSTVVAAFKSKEQKE
VEAIHSLRAANLAKMAMADRIEEVKFCLCRKTASGFMLQCELCKDWFHGACVPLPKTGTQ
KKVGVGWQSNSKDSKFLCPLCQRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAM
SWQDQARQSLATEELSSALAKLSVLSQRMVEQAAREKTEKIINAELQKAAANPDLQGHIQ
TFQQSGFSRATSPRQSLDYDDEETDSDEDIRETYGYDMKDPGEVKPYLFCDEEIPVKSEE
VVSHMWPAATPSFCAEHAYSSASKSCVQNISTPRKQPRKTPLIPRSLEPPVLELSPQAKA
QLEELMMLGDLLEVSLDETQHIWRILQATHPPSEERFLQVMEPDDSLMDKPLKLKLKDAE
KKRKRKLERAEHHHMLMAAAAVGGGQVMGEMRPAKSKELKRVGLELGLGGKPKKKKLKLN
MDKNREMKQLAKRLAKEEKERKRKEKAAAKAEAVREGLEKRKEKKILDIPSKYDWSGAED
SNDENAVCAAKNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVTCEMAENEDYICVDCSRKA
TGATVGMTVEEVAEESVVVLATSIQSLPSSVVASWSHVASAPHLIPTTSHQQLHQQQQQQ
QPEPQQGS
NT seq 5247 nt   +upstreamnt  +downstreamnt
atgtcgtttgcggagttcgtccccccgcccgaatgcccggtttttgagcccagttgggag
gatttctcggaccctttaggattcatcaacaagatccgacccattgcagagaaaacgggc
atctgcaagatccgacccccagaggactggcagcctccatttgcctgtgacgtacgcaac
tttcgcttcactcccagggtgcaacggctgaacgagctcgaggcgctcactcgggtcaag
ctcaactttctggatcaaatcgcaaagttctgggagctgcagggatccaagattcgattc
cctcatgtggagagaaagacgttggacctctatcagcttagcaagattgtgtcgtccgag
ggtggctttgagatggtgtgtaaagagaagaggtggtccaaggtggcgagccgaatgggc
tttccatctgggaaaggcgccggctcattgctccgctcccactatgagaggattctttac
ccctacgagctctttcagtctggagccacgcttaccggcatccagaggttgtatgatgag
ggcgatgatggggaggaagtagatgagggagttggtgacgaggcggtggaggaagaggag
caagatgaggaggaggaggaggaggataaagacggggagggtgatgctacgcaaaccaaa
gatcagcttctgcctgagaggcggtccaggcgccttaagtctgagagagaaaacaaggag
ccaaaaggcctgaaaatcttcggcgcaagtcccaagatggtgggcttggagatcgtgtca
gctgatgacggattcaacaagaagcagcgtcacttaaaagcccaggcctttgccatcaaa
atgagacctcgcaaggagacgctggaggtgaactttatcgacctctacctctgccttgtg
tgcggtcgtggcgacgaggaggaccggctcctgctgtgtgacggctgtgacgacagctac
cacaccttctgtctgatcccacctctgcaggatgtgcccaagggggactggcgctgccct
aagtgtgttgccgaggagtgcagtaagcccagggaggcgtttggcttcgagcaggctgta
agagagtacactctgcagagcttcggagagatggctgaccacttcaagtcggactatttc
aacatgcccgtacacatggttcccacggagctggtggagaaggagttctggcgcctggtc
agcagcatcgaggaagatgtcatcgtggagtacggcgctgacatcagctccaaagaggtg
ggcagcggatttcctgtcagggacggcaagaggaggctgttgggcgacgaagaggagtat
gccaactcgggctggaacctgaacaacatgccggtgctggagcagtctgtgctcacccac
atcaatgtggacatctcaggcatgaaggtaccctggctttacgtgggcatgtgtttctcc
tcgttctgttggcacatcgaggaccactggagttactccatcaacttcttgcactggggt
gagccgaagacgtggtacggcgtgccagcctctgcagcagagcagctggaggccgtgatg
aagaagttggctccagagctgtttgactcgcagccagacctcctccatcagttggtcacc
atcatgaatccaaacgtcctcatggagcacggtgtccctgtgtacaggaccaatcagtgt
gcaggggagtttgtggtgaccttccccagagcctatcacagtggcttcaaccagggatac
aacttcgctgaggctgttaatttctgcactgctgactggttgcctatgggtcgtcagtgt
gtggcccactacaggcgactccaccgctactgcgtcttctcacacgaggagctgctgtgc
aagatggctgcagatccagagagccttgacgtggaactggctgcttctgtcttcaaggaa
atgggagatatgatggtggaggagacaaagctccgacacgccatacgagaaatgggggtg
ctctcctcagaacaagaggtttttgaactggtgcccgatgatgagcgccagtgctacaag
tgtaaaacaacctgttttctgtccgcactgacttgcacctgcagccccgaccgtctggtt
tgtcttcaccacgcagaagatctgtgcgactgtccgctcggcaacaagtgtctccggtat
cgttatgatctggaggagtttccgtccatgctttatggggtgaagacacgggctcagtcc
tatgacacgtgggcaaagagggtcacagaagccctggctgcagaccagaagaacaagaaa
gatcttattgagctcaaggttttgctggaggacgccgaggacagaaagtatccagagaac
agtctgttccgacgcctcagggagatggtcaaagaggcggagacgtgctcctctgtagct
cagctgctgctcagccgaaagcagaggcacagcggtcgtctgcgttccgagaacactcgt
aaccgcaccaagctgacggtggacgagctcaaggcttttgtggatcagctcttcaggctg
ccctgcatcatcagccaggcccgacaagtcaaagagttactggaaaatgtggaggacttc
catgagcgagcccaggcagcgctgtcggacgagatgcctgactcctcaaagctgcaggtg
ctgttggatctgggcagcgggctggacgttgagctgcctgagcttccgaggctcaaacag
gagctccagcaggcccgctggcttgatgaggttcgcgtcaccctggccgatccccaccgg
gtcaccctggagctgatgaagagactgatagactccggggtgggtctggctccgcaccac
gccgtggagaaggccatggccgagctacaagagatcctgactgtctcagagagatgggag
gataaggctcgtggctgcctgcaggcaaggcctcgacacagcttggtgaccttggagagc
attgtgctggaagctcgtaacatcccagcatatctgccaaatattttggccctccgagag
gccctacagaaggctaaggagtggacctgcaaggtggaggccatccagagcggcagcagc
tacgcttacctggagcagctggagagtttgctggccaggggtcgctccatccctgtccgg
ctagatccgctcacccaggtagagtctcaggtagcggcagccagagcctggagagagaga
actggtcgcaccttcctcaagaagaactccacgtacacgctgctccaggttctcagtcct
cgcgtcgacattggggtgtacggtaacagcaaaagcaagcggaagcgtgtgaaggagctc
atggagaaggagagaggcggctttgaccctgacgcactcagcgacctcgaggaaagcctg
gaggaggtacgagacccttcaactgtcgtcgcagccttcaaatccaaagagcagaaagaa
gtggaggccatccactcactccgagctgccaaccttgccaagatggccatggccgaccgc
atcgaggaggtaaagttctgcctgtgtcgaaagacggccagcggcttcatgttgcagtgc
gagctttgtaaggactggttccacggagcgtgcgtgcctctgcctaagacgggaacccag
aagaaagtgggcgtgggctggcagagtaacagcaaagactctaaattcctgtgtccgctg
tgtcagcggtccaggaggccgagactagagacaattctgtcgctgctggtgtcgctgcag
aagctgccggtgcgtctgccagaaggagaggctctccagtgtttgaccgagagggcaatg
agctggcaggaccaagcgcgtcaatctctcgccactgaggagttgtcctcggcactggca
aaactgtctgtgctgagtcagcggatggtggagcaagcggcgagagagaaaacagagaaa
atcatcaacgctgagcttcagaaagctgctgccaaccctgacttacagggccacatccag
actttccagcagtcgggtttcagcagagccacgtcacctcgccagtctttggactacgat
gacgaggagacggactcagacgaggatattagggagacctacggttacgatatgaaggac
ccaggtgaggtgaagccctacctgttctgtgacgaggagattcccgtcaaatccgaggag
gtggtcagtcacatgtggccggctgccacgccctccttctgtgccgagcatgcctactcc
tccgcctccaagtcctgtgtgcaaaacattagcacacccagaaagcagcccaggaagacc
cctctcatccctcgcagcctggagccgccggtgctggagctgtccccgcaggcgaaggcc
cagctggaggagctgatgatgctgggagacctgctggaggtgtccctggatgagacccag
cacatctggaggatcctgcaggccacgcaccccccctctgaggagagattcctgcaggtc
atggagcccgacgattctctgatggacaagcccctgaagctcaagctcaaagatgccgag
aagaagaggaaacggaagctggaaagagccgagcaccaccacatgctgatggccgccgca
gccgtgggcgggggccaggtgatgggagaaatgcgaccggccaagtccaaggaactgaaa
agggtcggcctggagctcggcctgggcgggaaacccaagaaaaagaaactaaagctcaac
atggacaaaaaccgagagatgaagcagctcgccaaacggttagccaaggaggagaaggag
aggaagagaaaggagaaggcggccgccaaggcagaggccgtccgagagggactggagaag
aggaaggagaagaagatcctcgacattccctccaagtacgactggtccggagctgaggac
tccaatgatgagaacgctgtgtgtgcggctaagaactgccagagaccctgtaaagataag
gtggactgggtgcagtgtgacggcggctgcgacgagtggttccaccaggtgtgcgtgggc
gtgacgtgcgaaatggccgagaacgaggactacatctgtgtggactgctcgcgcaaggcc
accggggcgaccgtgggcatgaccgtggaggaggtggcggaggagagcgtggttgtgctg
gcgacatccattcagagtctgccctcgtctgtcgtggcctcgtggtctcacgtggcctcg
gcccctcatctaatcccaacaacgtcacaccagcagctccaccagcagcagcagcagcag
cagccagagcctcagcaaggcagttag

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