Hippoglossus stenolepis (Pacific halibut): 118102000
Help
Entry
118102000 CDS
T08308
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118102000
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118102000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Lipase_GDSL
DUF3887
Motif
Other DBs
NCBI-GeneID:
118102000
NCBI-ProteinID:
XP_047194630
LinkDB
All DBs
Position
22:16976465..16996763
Genome browser
AA seq
1772 aa
AA seq
DB search
MAELLLCPVRTQVPEFADVCTEGSCYPATGDLLIGRAHTLXATSTCGXKQPGSFCIVGHL
EEEKKCFVCDSSKTFDEETNSVSHAVENVVTTFAHNRLKTWWQSESGVENVTIQLDLEAE
FHFTHLIMTFKTFRPAAMVIERSMDFGKTWQVYRYFAYDCESSFPGVSAGPMVKVDDIIC
DSHYSDIEPSTEGEVIIRVLDPAFEIEDPYSVRIQNMLKITNLQVKFIKLHTLGDNLLDS
RDEVTEKYYYALYDLVVRGNCFCYGHASECAPMDGAPRRAEGMVHGRCVCNHNTEGLNCE
RCTDFYNDLPWRPAEGRNTHACKKCECNRHSTSCHFDLAVFMTTGNASGGVCDDCRHNTV
GRQCEQCAPFFYQHPERDLRDPHVCEQCNCDPTGSLEGGLCDPRTDVAARLISGQCRCKG
HVEGERCDHCRQGHYGLGQGPQGCLPCACNPLGTLPGGNPCESHSGKCFCKRLVDGHNCD
QCMPQQWGLSNDMDGCRSCDCDQGGAVDNNCDPHSGQCVCREHMFGRRCDQVESGFYFIT
LDHYTYEAEDAKHGPGVTVVQRPYPLDRSPTWTGMGFVNVPEGAYLEFNINNIPDSMDYD
ILIRYEPQLPEQWEQVNIRVQRPVFNPPNYISQCGNSIQAGDQQAISLPPGSRHVLLVRP
VCFERGMNYTIRLSLPLYSSVSDVQSPYTLIDSLVLIPRVRELDMFHGIDGVGAWDTFQR
YRCLESSQSVVKSPMTDICSDYIFSVSALLHNGAMACQCDAQGSLSAVCESSGGQCRCRP
NVVGRNCDHCAPATFLFSPAGCRPCDCDPRGSVSAFCHEATGQCECVPGATGRQCSHCLP
GFWGFPQCRPCHCNGHSEYCHLQTGECQGCRDFTSGHLCERCLDGYHGNPELGSGGHCRP
CMCPDGPRSGRQFADKCYLLSYTNQLVCVCSPGYKGSRCDECSPGYFGNPLVPGGGCMPC
QCNNNIDMHDPGSCDTRTGACLKCLHHTDGYGCKRCKLGYYGDAATQSCRKCMCYSVGTL
PPACSSPGECQCDQHTGQCPCQPNVVGQNCDRCAVDTWNITSGTGCERCDCDPAHSFGSS
CNEVTGQCSCKPGFGGSTCRECRELFWGNPEVKCHACDCEPRGISSEQCHRATGQCTCVE
GVSGPRCDECARGSTGEFPECEPCHQCFATWDTVVGELTNQTRRLEDQVTELQTSGVTEP
YKELIGSLERNSKAVREIVESNPAAVKLEQTQDLMHHITGLMSYLNGKLNTTEETLNLLH
NDANSTDVNLDALTEEANQLELSVQDLRQQVYDAKNANLQGAMDTITEAHTQSTMAERRA
NTSTSDPGNTVEESAAVRKATEDKLSSGQKEFDRKHQRNSQKLEKLSKELEKFDLSPLSE
KTCGGAADDDGCSGSSCGGLGCVGEDGAPQCGGEGCEGIVTTSQTALKSAKDLDRDILAA
MQEVDKLSRLVWEANIRANEAKGNAMEVLIKSNRSKERVEQSNEQLRNLIKEIRDLLTNE
KADVSVIEMVANEVMALKMPTSTEKLHELTNEIREKVGTLTSVESILTQSAEDIQVAENL
LKQAKAASEEASNMKDTADVVKAALDESERAQGIAMDAIQLAQNNTKGTLDLLISVESET
ASTELKLSNTTGRLVQLEREVGLLRQNNLEVNRLSETAERVGDQARQEADEAQKEFDSEV
KDKLEKVEDLVEDKGETVLQARRRADELQQEAKELLTQSSDQLQRLGELESSYEENQRIL
EAKAAELVELEQIVRKVLEEISYKVTLYSTCL
NT seq
5319 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctcctgctgtgtcccgtcaggactcaggtaccagagtttgcagatgtgtgc
acggagggcagctgttacccggccaccggcgacctgctgatcggccgggcgcacacactc
nncgccacctccacctgcggcnngaagcagccgggcagcttctgcatcgtcggacatctg
gaggaggagaagaaatgtttcgtgtgcgactccagcaagacgttcgacgaggagaccaac
tccgtcagccacgccgtcgagaacgtggtcaccaccttcgctcacaaccgcctcaaaacc
tggtggcagtcggagagcggtgtggagaacgtgaccatccagctggacctggaggccgag
tttcacttcacacaccttatcatgaccttcaagacgtttcgcccggctgccatggtgatc
gagcgctcgatggacttcgggaagacgtggcaggtttatcgctatttcgcctacgactgc
gagtcgtccttccccggtgtgtcggccgggcccatggtcaaagtggacgacatcatatgt
gactcgcactactccgacatcgaaccatccacagagggagaggtgataatccgcgtgctg
gacccggccttcgagatcgaggacccgtacagcgtgaggatacagaacatgctgaagatc
accaacctccaggtgaagttcatcaagctccacacgctgggcgacaacctgctcgactcc
cgcgacgaggtgacggagaagtactactacgccctctacgacctggtcgtccggggaaac
tgcttctgctacggtcacgcctccgagtgcgccccgatggacggagcgccgaggagagcc
gagggcatggtgcacggtcgctgtgtgtgtaaccacaacactgagggattgaactgtgaa
cgctgcacagacttttacaacgatttgccgtggagacctgcggagggacgcaacacacac
gcctgcaagaagtgtgagtgtaaccgtcactccacctcgtgtcacttcgacctggccgtg
ttcatgacgaccggcaacgccagcggaggcgtgtgcgacgactgccgacacaacacggtc
ggccggcagtgcgagcagtgtgcgccgttcttctaccagcacccggagagagacctgagg
gacccccatgtctgtgaacagtgtaactgcgacccgaccgggtctctggagggcggactg
tgtgacccgcgcaccgacgtggccgcccggctgatctcaggccagtgtcggtgcaaaggc
cacgtggagggcgagcgctgcgaccactgccgacagggacactacgggctgggccagggg
cctcagggctgcctgccctgtgcctgtaacccgctgggcactctgccgggaggaaacccc
tgtgagtctcactcaggaaagtgcttctgcaaacgcctggtggacggacacaactgtgac
cagtgtatgcctcagcagtggggtctgtccaacgacatggacggctgcagatcatgtgac
tgtgaccagggcggagctgtggacaataactgtgacccccactcaggacagtgcgtgtgc
agggagcacatgttcggacgccgctgcgatcaggtggagtccggcttctacttcatcact
ctcgatcactacacctacgaggccgaggacgccaagcacggacccggggtgacggtggtc
cagagaccttaccctctggaccggagtcccacgtggaccggtatgggatttgttaacgtg
ccagaaggagcctacttagagttcaacatcaacaacatcccagattccatggactacgac
atcctgattcgctatgaacctcagctgccagagcagtgggagcaggtgaacatcagagtc
cagcgtcccgtcttcaaccctccgaactacatcagtcaatgtgggaactccatccaggct
ggagaccaacaggccatctctctccctcctggatccagacacgtgttgctggtcaggccg
gtttgtttcgagagaggaatgaactacacgatccgtctcagtctgccgctgtactcgtca
gtcagcgacgtccagagcccgtacacactcatcgactccttggtgctgattccccgggtc
agggagctggacatgttccacggcatcgacggcgtgggagcgtgggatacgttccagcgc
taccgatgtctggagagcagccagagcgtcgtgaagagcccgatgaccgacatctgcagc
gactacatcttcagcgtctctgctctgctgcacaacggagccatggcatgccagtgtgac
gctcagggttcgctcagtgctgtgtgcgagtccagcggaggccagtgtcgctgtcgaccc
aacgtcgtcggcaggaactgtgaccactgtgccccggccacattcctgttcagccccgcc
ggctgcagaccttgcgactgcgaccctcggggctcggtcagcgccttctgccacgaggcc
accggccagtgcgagtgcgtccccggggccacgggtcgccagtgttcccactgcctgccg
ggcttctggggcttcccccagtgccgaccctgccactgtaatggccacagcgagtactgc
cacctgcagaccggggagtgccagggctgcagagacttcaccagcggacacctctgcgag
aggtgcctggacggttaccacgggaaccccgagctgggctcagggggccactgtcgcccc
tgtatgtgccctgacggcccccgcagcggacgccagtttgcagacaaatgttacctcctg
tcctacaccaaccagctggtgtgtgtgtgcagccccggatacaaaggctccagatgtgac
gagtgctcccccggttacttcgggaaccccctggtgcccggcgggggctgcatgccctgc
cagtgcaacaacaacatcgacatgcacgacccggggtcctgcgacacccggacgggggcc
tgcctcaaatgcctgcaccacaccgacggctacggatgcaagcgctgcaaactgggttac
tatggcgacgctgccacgcagagctgcaggaagtgcatgtgctacagcgtgggaacgcta
cctccggcctgttcgtcccctggcgagtgtcagtgtgatcagcacaccggtcagtgtccc
tgccagcccaacgtggttggtcagaactgcgaccgctgtgccgtggacacgtggaacatc
accagcgggacgggctgcgagcgctgcgactgcgaccccgcccactccttcggctcctcc
tgcaatgaggtcacgggacagtgctcgtgcaaacctggttttggcggcagcacgtgtcgg
gagtgcagggagctgttctgggggaatccagaggttaaatgtcacgcctgtgactgtgaa
cctcggggaatctccagtgaacagtgtcaccgcgccaccggtcagtgcacctgcgtcgag
ggcgtctccggcccacgctgcgacgagtgcgcccgaggctccacgggcgagttccccgaa
tgtgaaccctgccaccagtgcttcgccacctgggacaccgtggtcggcgagctgaccaat
cagacccgacgtctggaggaccaggtgacggagctgcagaccagcggggtgacggagccg
tacaaagagttgatcggcagcctggagagaaactccaaggccgtgagagagatagtggag
agcaaccctgcagccgtgaagctggagcagacccaggatctcatgcaccacatcaccggt
ttgatgtcctacctgaacggaaagctcaacaccacggaggagaccttgaaccttctccac
aatgacgccaactccaccgacgtaaacttggacgcactgacggaggaggccaaccagctg
gagctgagcgtccaggacctgaggcagcaggtgtacgacgccaagaacgccaacctccag
ggtgccatggacaccatcacagaagctcacacgcagtctacgatggcggagcgccgcgcc
aacacctccaccagcgaccctggaaacacggtggaagagtcggccgcggtacggaaagcc
acagaggacaaactgagcagcggccagaaggagtttgaccgcaagcaccaaagaaactcg
cagaagctggagaaactgtccaaggagctggagaaatttgacctgtcaccacttagtgag
aagacgtgtggcggtgcagctgatgatgacggctgctctggctcgtcctgcggcgggttg
ggttgtgtcggcgaggacggagctcctcagtgcggaggagaaggatgcgaaggcatcgtc
acaacctcccaaactgctctcaaatcagccaaggacctggaccgggatatcttagcagct
atgcaggaggtggacaagctctccaggctggtgtgggaagcaaacatccgggcaaatgag
gccaaggggaacgcgatggaggtgctgatcaaatccaaccggagcaaggagcgggtggag
cagagcaacgagcagctccgcaacctcatcaaagagatacgagacctcctcaccaatgag
aaggcagatgtttcggtgatcgagatggtggccaacgaggtgatggctctgaagatgccg
acctcgacggagaagctgcacgagctgacgaatgagatcagggagaaggtcggcaccctg
accagcgtggagagcatcctgactcagagcgctgaggacatccaggtcgcagagaacctg
ctgaagcaggccaaggccgccagtgaagaggcgtccaacatgaaggacacagcagatgta
gtgaaggcggcgctggacgagtccgagcgcgctcagggcatcgccatggacgccatccag
ctggcccagaacaacactaaaggaaccctggacctgctgatctctgtggagtcggagaca
gcctccacggagctgaagctcagtaacaccaccggacgcctggttcagctggagagggag
gtcggcctgctgagacaaaacaacctggaagtgaaccggctgtcggagacggccgaaagg
gtcggagaccaggccagacaggaagcagacgaggcccagaaggagttcgactcggaggtg
aaagataagctggagaaggtggaggacctggtggaggacaaaggggagacggtgctgcag
gcgaggaggcgagcagacgagctgcagcaggaggccaaagagctgctcactcagagcagc
gaccagctgcagagactcggagagttggaaagttcctacgaggaaaaccagcgcatcctg
gaggccaaagccgcggagctggtggagctggagcaaatcgtccgcaaggtcctggaggag
atcagctacaaagtgactctgtacagcacctgcctgtga
DBGET
integrated database retrieval system
