Hippoglossus stenolepis (Pacific halibut): 118102266
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Entry
118102266 CDS
T08308
Name
(RefSeq) synaptopodin-2
KO
K24066
synaptopodin-2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118102266
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
118102266
Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
118102266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
118102266
NCBI-ProteinID:
XP_035004226
LinkDB
All DBs
Position
23:complement(8408622..8424925)
Genome browser
AA seq
1666 aa
AA seq
DB search
MGTGDYICVTLRGGAPWGFTLTEGEGDTYRPFLISQVEEGGRAFSAGVQEGDEVVSLNGE
PCADLTLLRALALIETSIDCLQLLLKRYGSITEDDESDTYCGERESSSDALASTTLHILS
PKHRSQSPRELYIAESQDEAYYGELDSNSESPKGPQLLCTQLDAPPSDGQRGREPVFREK
EVRQCFSPGNVVELQVSLSEQTSDRAGCSSLGSALGVEGGLSNREVIETIHTSTISHRLP
CPVREPLGQHGVVLGSPSVLGQVEVILQQPSASGAGRGILSVGGPRVSGSVGSQSEGEEG
GGHCEGDPGSFTVSFGIPTDEASQAAEQDSDSEGDPDKPNKHRARHSRLRRSESLSEKQV
KDHKSKCKRIALLLTAAPPNPNNKGVLMFKKHRQRAKKYTLVSYGTGEDEPENSDDEDEE
DEKQETHTVEFTLVAPNDSDLDKHFLTNVHSSKGVLTINWDKGLLEIERNLNNKAEMECL
PDTKGKGALMFVQRRQRMDEISAEHDELRRQGIPVEAVPEPEKKTMEQSYMQSTTEGHAY
MDVNVHQQSQQQHQCQQYQEQQFHEQQHGYQQQQQSYQQQQQNYQQQQEYQQYQQQQYEQ
QQVYQQQQVYQQQQEYHQEHQQMQQYSSNVNGTVQHQANEMQSSFSNRTAKPFSVEKMAA
TPFSPAMCGANEDSVGQGEELASRDERIATPASRTGLLMDARKRNTGKQMFTFKEAPKVS
PNPALLNLLNKGDKKLGFESGPEEDYLSLGAEACNFLQSPRAKQKNPPPVAPKPAIDPSS
PPWSPQIEMNNQDMAQCAENSVSTPAAAPTTDTTPAPEQEPTPAPAPEPSPPPAPAEAAA
STNTEEQHTWTLSEPESQKEPLQVTTQEENCQINSDPQPEPAPVTTWAPAQSQSQQASTN
SWHPVQVQPQEPPPSQSPPQLPWVTRQNTQTQAQPPPPTNTWTPQIQPSWSQPQEPAQAQ
THAQATWAQPPEQPQPHPQVQPPWAQPLEQPQPQPQVQQPWAQPLEQPQPQPQAQPPWAQ
PLEQPQPQPQAQPPWAQPLEQPQPQPQVQPPWAQPLEQPHIQQMQPTWGQPQEPVQQQTQ
APWAKPLEADTQPQPPWMQPSQQKSQVQPPWVQQAQPESEPQSPWVQQQQNQAPQQAWPQ
AQAPGQSQPPWVSAQPQQQQQPSINAWPPSQAQAQAQPPWMQAAQAQPQVQPQANLNPWA
PVPAQAQPQPSWPQQPLGHGQHSMNSWAQEQNQAQHQPHWAQPAPPQSTPQPNWQPATAK
SPPQPSTNTAWPPAQTQPQTHWAPESQQTPVNVSTSMVNTHPSPKPWLPPQNAPQNRTPP
SPPQRMHSFTIRQRDSPPINPMATILNPSSAGPAYEMPIVRGKGADMFAKRQSRMEKYVV
DSETVEANKACRSTSPTVSLPNEWKYSPNVRAPPSRAYNPMQSPSYPPAATKQLPQSSPA
SKDKKKAKGKPAPKLNVIDVMKHQPYQLDSSLFTFGPAVVAPKPPAPKPDSSPPNPPAEN
QPISYEQMAPIQPTGPLNAPYPQQAYGMPMQPMMHEGHYQQTPANVYANPTAYQQPPAGP
YQQAYNPQYQQPAPPVYHPQAPQPSNPSYQQAPQVPYPPASSPPYMAAPSVPYQPLPPSS
FVVPSFPVAARPESASGGNPVAAPKPRFTAKKSTAQVWKPTAVDKE
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggggattacatctgcgtgacgctgcgtgggggtgcaccctggggattcacc
ctgacagagggagagggagacacctacagacctttcctcatttcacaggtggaagaagga
ggccgcgccttctcggccggagtgcaggagggtgacgaggtggtgtcgctgaacggagag
ccgtgcgctgatctcaccctcttacgggcccttgccctcatcgagacgtcaatcgactgc
ctgcagctgcttctcaaaagatacggctccattactgaagacgatgaatcagacacatat
tgtggtgagagggaatcttcgtctgatgctttagcgagcaccaccctccacatcctctcc
ccaaagcacagatcccaaagcccgagggaactctacatagccgagtcccaggacgaggcc
tactatggggagctggacagcaactcagagtcccccaagggaccccagctgctttgcacc
cagctcgatgctcccccgtctgatggtcagagaggccgagagcctgttttcagggagaaa
gaagtacgacagtgcttctcccctgggaacgtggtggagctccaggtttccctgtctgag
caaacgtcggaccgcgcgggctgctcctctcttgggagtgcactcggggtcgagggggga
ctctcgaacagggaggttatcgagaccatccacacctccaccatatcgcaccgtctgccg
tgccccgtgagagagccactgggccagcatggggtggtgctcggctccccctcggtgttg
gggcaggtggaggtcattttgcagcagccatcagcatccggggcagggaggggcatcctg
agcgtgggtggccccagggtcagtggaagcgttggatcccaaagtgaaggggaagaagga
ggagggcactgcgagggagaccctgggtcttttacggtctcatttggaattcccacagat
gaggcgtcacaggcagcagagcaggactctgactctgagggggatccagacaaacctaac
aagcatcgggcaaggcactccaggctcaggcgtagcgagagtctgtccgagaagcaggtg
aaggaccacaagtccaaatgtaaacgtattgctctcctcctcacggctgctccgcccaac
cccaacaacaaaggggtgttgatgttcaagaaacatcggcaaagggccaagaagtacacg
cttgtgagctacggcacaggagaggacgaaccagagaacagcgacgacgaggacgaggaa
gacgaaaaacaagaaacccatactgttgaattcacccttgtggctccgaacgattctgac
ctagataagcatttccttactaatgtccacagtagcaaaggtgtgctgactatcaactgg
gacaagggtctccttgagattgaaaggaacctgaacaacaaagcagagatggagtgtttg
cctgataccaagggaaagggtgcccttatgtttgtccagcggcgtcagaggatggatgag
atttctgctgagcacgatgagcttaggcgccaggggattcccgtggaagcagtgccggag
cctgagaagaagacaatggagcagtcctatatgcagtcaacaacagagggccatgcttac
atggatgtaaatgtacaccagcaaagccaacagcaacaccagtgccagcagtatcaagaa
caacagttccatgagcaacaacatggctaccaacagcaacaacaaagctatcaacagcag
caacagaactaccaacagcagcaagaataccaacagtaccagcaacagcagtatgaacag
cagcaagtgtatcaacagcagcaagtgtatcagcagcagcaagaatatcaccaagagcac
cagcaaatgcagcagtattcttcaaacgtcaatggcacagtccaacatcaagccaatgaa
atgcagagttctttcagcaatcgcactgcaaagcctttctcagttgaaaaaatggcggct
acccctttttctcccgcaatgtgtggggccaatgaagattctgtgggccaaggagaggag
ctagcatcccgcgatgagcgcattgctacccctgctagtaggactggccttctgatggat
gcaaggaaaagaaatactggcaagcaaatgttcacatttaaggaagccccaaaagtgtca
cctaacccagcattactgaacctcctcaacaagggtgataagaagttgggtttcgagtca
ggacctgaggaagactacctcagccttggggctgaggcttgtaatttcctccagtctcca
cgagctaaacaaaagaatcctccaccagtggctccaaagcctgcgatcgaccccagctct
cctccttggtccccacagatagaaatgaacaaccaggacatggctcagtgtgctgaaaat
agtgtttccacacctgctgctgcccccaccacagacactactcctgctccagagcaagag
ccaacccctgcacctgctcctgagccctctccccctcctgcccccgcggaggctgctgcc
agcaccaatacagaagagcagcacacgtggactctctcagagcctgaatctcaaaaagag
cctctccaagtgacaactcaagaagaaaattgtcaaattaattctgatccgcagcctgag
cctgcacctgtaaccacctgggctccagcacaatcacagtcacaacaagcatctaccaat
tcctggcatccagttcaagtgcaaccacaggaaccacctccaagtcagtccccgccacag
ttaccttgggtgacaagacaaaatactcagacccaagcccagcctccaccccccacaaac
acttggacccctcaaattcagccatcctggagtcagcctcaagaaccagcacaagcccag
acacatgctcaggcaacctgggcccagcctccagagcaaccccagcctcatccacaggtc
caaccaccatgggcccagcctctagagcaaccacagcctcagccacaggttcagcaaccc
tgggcccagcctctagagcaaccacagcctcagccacaggcccaaccaccctgggcccag
cctctagagcaaccacagcctcagccacaggcccaaccaccctgggcccagcctctagag
caaccacagcctcagccacaggtccaaccaccctgggcccagcctctagagcagccacac
attcagcaaatgcaaccaacttggggtcagcctcaagaaccagtgcagcagcagacccag
gccccatgggcaaagccattagaggcagatacacagcctcaaccaccatggatgcaacca
tcccagcagaaatcccaagtacaacctccttgggttcaacaggctcagccagaatccgag
ccacagtcgccatgggttcaacaacaacagaaccaggctccacaacaagcttggccacag
gcccaggcacccggtcaatcacagccaccttgggtttcagctcagcctcagcagcaacag
cagccttcaattaatgcatggccaccatcacaagctcaagcccaagctcagccaccgtgg
atgcaagcagcccaagcacaacctcaagtgcagcctcaagccaatttgaatccatgggca
ccagtacctgcccaggctcagccccaaccatcatggccccagcaacctctagggcatgga
cagcactcaatgaattcttgggctcaagagcaaaaccaggcccaacatcaaccacattgg
gctcaaccagctccaccccagtccacaccacagccaaactggcaaccagccactgcaaag
tctccaccacagccatcaacgaatacagcctggcctccagctcagactcagcctcagaca
cattgggcaccagagtcacagcaaacacctgtgaatgtttccacgtcaatggtgaacact
catccttctccaaaaccatggcttccaccacaaaatgccccacaaaaccgcactccaccc
tctccaccccagcggatgcactcttttaccatacgtcaaagagattcaccaccaatcaac
ccgatggccactatcttaaacccatcttctgcaggtccagcttatgagatgccaattgta
agagggaagggagctgatatgtttgccaagagacagtctcgtatggagaagtatgttgtg
gactccgagactgtggaagcgaacaaggcgtgccggtcaacatcaccaactgtctcctta
ccaaatgagtggaaatatagtcctaatgtacgtgctccaccttcgcgggcgtataatcct
atgcagtccccttcttatcccccagcagcgacaaagcagctccctcaatctagtcctgca
tccaaagataagaaaaaagccaaagggaaacctgcccctaaacttaatgttatagatgtg
atgaagcatcaaccatatcaacttgattcctcactctttacttttggtccagcagtggtg
gctcccaagccccctgcgcctaagcccgacagttcccctcctaacccccctgctgaaaac
caaccaattagttatgagcaaatggctcccatccagccaactggaccacttaatgctcca
tacccccagcaggcctatgggatgcccatgcagccaatgatgcatgagggccactaccag
caaaccccagctaatgtttatgccaaccctactgcttatcagcaaccccctgctggccct
taccagcaagcatataacccacagtatcaacaacctgccccacctgtttatcatccccaa
gctcctcaaccttcaaacccttcctaccaacaggcaccgcaggttccttacccaccggcc
agcagccctccctacatggcggctccttcagtgccttaccagccgctgcctcccagtagc
tttgtggttcctagtttccctgtggctgctaggcctgaatctgcatcaggtggcaaccct
gtagctgctcctaagcctagatttacagccaaaaagagcacggctcaggtgtggaagccg
acagcagttgataaagagtga
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