Hippoglossus stenolepis (Pacific halibut): 118102276
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Entry
118102276 CDS
T08308
Symbol
polr2a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03020
RNA polymerase
hsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118102276 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
118102276 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118102276 (polr2a)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118102276 (polr2a)
Enzymes [BR:
hsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118102276 (polr2a)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118102276 (polr2a)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118102276 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
118102276
NCBI-ProteinID:
XP_035004240
LinkDB
All DBs
Position
23:6229963..6244030
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRLSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIDRTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDNN
NPKIKDILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQHETEEDISKEKGHG
GCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEVFILGMDPKF
ARPEWMILTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAIIKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFRFDCTNERALRRMLQEDVVKDVLTNANVQSVLEREFDQMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINARTPTDLNPLRVVEGLQDLSKKLVI
VNGEDPLSRQAQKNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFNEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SAHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNMPGISVAGPTGMF
FGTVASPMSGMSPAMTPWNTGATPAYGAWSPGVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSXSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEETN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccactgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggttgtccgtcacagaaggggggatcaag
taccccgaaacaacagaaggaggacgtcctaaacttggcggccttatggacccaagacaa
ggtgtcatagacagaacgggaagatgtcagacatgtgcaggcaacatgacagagtgtcca
ggccactttggacacatagaactggcaaagccagttttccatgtcggcttcgtaacaaag
atcatgaaggttctccgatgtgtgtgtttcttttgctccaagctattagtggataataac
aacccaaagattaaagatatcctggtaaaatctaaagggcagccacgaaagcgcttgaca
cacgtgtacgagctgtgcaaaggaaaaaacatctgtgaaggaggggaggagatggacaac
aaatttggaatggagcaacacgagacagaggaggacatttctaaagagaagggtcacggt
ggctgtgggcgctaccagccacgcatcagacgctctggcctggagctgttcgctgagtgg
aaacacgttaatgaagactcacaggagaagaaaatcctgctgaatcctgagcgtgtccac
gagatcttcaagcgcatctctgatgaagaggtcttcatcttgggcatggatcccaagttc
gcccgtcctgaatggatgattctgactgtgctgcctgtgcctccactggctgtgaggcct
gcagtcgtcatgcagggatctgctcgcaaccaggacgacttgacccacaagctggctgat
attgttaagatcaacaaccaactgagaagaaacgagcagagcggtgcagcggctcacgtc
atagctgaggatgtgaagctgcttcagtttcacgtagccacaatggtggacaatgaattg
cccggcctgccgagggcaatgcaaaaatctggccgccctctcaaatcccttaagcaacgg
ttaaagggaaaggaggggcgagtccgaggtaacctaatgggcaagcgtgtggatttctcc
gctcgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtgggcgtaccgcgg
tccatcgcagccaacatgaccttcccggaaattgtcacaccctttaacattgacagactt
caagagctggtgcgacgaggcaacagccagtacccaggagccaaatacatcattcgtgac
aacggagacagaattgacctgcgcttccatcccaaaccaagtgaccttcatctgcagatc
ggctacaaggtggaaaggcacatgtgtgatggtgacatcgtcatcttcaaccgacagcct
acactacataaaatgtccatgatggggcacagggttcggattctgccctggtccacgttt
cgactcaacctcagtgtcaccaccccatacaatgctgactttgacggggatgagatgaac
ctccacctacctcagtccctcgagacgagggcagagattcaggagctggccatggtgcca
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacacactc
acagccgtgcgcaaattcacaaagagagacgtcttcttagaaaggggggaagtcatgaac
ctcctcatgttcctctccacctgggacgggaaaatgccccaaccggccatcatcaagcca
cgtccactgtggacaggcaagcagatcttcagtctcatcattccaggacacatcaacgtc
atccgcacacacagcacccaccccgacgaggaggacagcggtccttacaaacacatctca
ccaggggacaccaaggtcatcgtggagaatggcgagttgatcatgggcatcctgtgtaag
aagtcgctcggaacctcagccggctcccttgtccacatctcctacctggagatgggccac
gacatcaccaggctcttctactccaacattcagactgtagtcaacaactggctgctcatc
gagggtcattccattggtatcggtgactccattgctgatgccaaaacctaccttgacatc
cagaataccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgacccctggtaacacactgaggcagacctttgagaaccaggtcaat
cgtatcctcaacgacgctcgtgacaaaacgggatcctcagcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggccggttctaagggttcaaagattaacatctca
caggttatcgctgtggtggggcaacagaacgtggagggtaaaagaatccccttcgggttc
aaacaccgcacgctgcctcacttcattaaagatgactacggtcctgagagtagaggcttt
gtggagaactcctacctggctggcctgacaccaactgagttcttcttccacgccatggga
ggcagagagggtctgatcgatacagctgtcaagactgctgagactggttacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtgaagtacgacggcacagtgcgtaactcc
atcaaccaggtggtccagctgcgctacggtgaagacggcctggcaggagagaatgtcgag
ttccaaaatctggcaactctcaaaccctcacacaaggcctttgaaaagaagttcagattt
gactgcactaatgagcgcgcactgaggcggatgctgcaggaggacgtggttaaagacgtc
ctgaccaacgccaatgtgcaaagtgtcttggagagagagtttgatcaaatgaaggaggac
cgggagatccttcgggccattttccccacaggggacagcaaggtggtgctgccatgcaac
ctggccagaatgatctggaatgctcagaagatcttccgcatcaacgctcggaccccaacc
gacctgaatcctctcagagtggtcgagggtcttcaagatcttagcaagaagctggtgatt
gtgaacggcgaggacccgctgagccgacaggcccagaagaacgccactctgctcttcaac
atccacctgcgctccacgctctgctccaaacgcatgacggaggagttccgcctttccacc
gaggctttcgactggctgctgggagagattgagaccaagttcaaccagtccattgcccac
ccaggtgaaatggtcggcgctctggctgctcagtcgctgggagaaccagctactcagatg
accctgaacactttccattacgccggtgtgtcagccaagaacgtaacacttggtgtgcct
cgtcttaaggagttgatcaacatctccaagaggcccaagacgccctcgctgacggtcttc
ctgctgggtcaggctgcacgtgacgctgagagggccaaagacatcctctgtcgactggag
cacaccacactccgaaaggtgacagccaacactgccatatactacgaccccaacccccag
aacaccgtggtggccgaggaccaggagtgggtgaacgtctactatgaaatgcccgacttt
gatgtgacacgcatttcgccatggctgctccgtatcgagcttgaccgcaagcacatgact
gatcgcaaactaactatggaacagatcgcagagaagatcaatgcaggatttggagatgat
ctgaattgtatcttcaatgacgacaatgctgagaagctcgttctgcgaatcagaatcatg
aacagcgacgagaacaagttcaacgaggatgaggaggtggtggacaaaatggacgacgac
gtgttcttgagatgcatcgagtccaacatgctgacggacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcataatc
accgaggaaggtgagttcaaggccctgcaggagtggatcctggagacggacggagtgagt
ctcatgagagtcctgagcgagaaggacgtggatcccgtcagaaccacctccaacgacatt
gtggagatcttcacggtcctgggaattgaggctgtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggttcctacgtcaattaccgtcacttggctctgctctgt
gacaccatgacctgccgcggtcacttgatggccatcacacgtcacggcatcaaccgtcaa
gacacaggaccgcttatgaagtgttcctttgaagagacggtggatgtgttgatggaggca
tcagcacacggtgaatgtgaccccatgaagggggtgtcagagaacatcatgctgggccag
ctcgccccggccggtaccggctgctttgatttgctgttggatgctgagaagtgcaaatac
gggatggagattcccacaaacatgcctggtatcagcgtggctggacccactggaatgttc
tttggcacagtggcaagtcccatgagtggcatgtcacccgccatgacaccgtggaacact
ggggctacaccagcctacggcgcctggtctcctggtgttggaagcggcatgacccctggt
gcagccggtttctctcccagcgcagcatcagacgcaagtggcttctctcccggctactcc
cctgcctggtccccgactcctggctccccaggttctcccggacctgcaagcccctacatc
ccgtctccaggtggagccatgtcaccaaactactcgcccacctcaccggcctacgagcct
cggtcccctggtggctacaccccacagagcccaggctactccccaacatctccctcctac
tcccccacctctccctcttactcccccaccagccccaactacagcccgacctctccttcc
tactcccccacttcgcccagttactccccaacttctccctcctattcgcccacatctccc
tcctattcccccacctctccatcttactcccccacctccccgtcttactcccccacctcc
ccgtcctactctcccacctcgccaagctacagcccgacatcgncgagttacagcccgaca
tcacccagctactctcccacctccccctcttactcacccacttcaccttcatactctccc
acctccccctcttactctcccacctccccctcttactcccctacctctccctcctactcg
ccaaccagtccgagctacagccccacatcaccaaactacactcccacctctcccagttac
tcccccacctccccctcctactcgacgtcgccctcttactctccaacctcccccaactac
accccgaccagccccaactactctcccacctctccctcgtactccccaacctctccctca
tactctccttccagtccgcgctataccccgcagtcacccacctacacacccagctcgccc
tcatacagccccagctcgccctcctactcccccacctcccccaaatacaccccgacttca
ccctcatacagccccagctccccggagtacactcccacctctcccaagtactcccctacc
tctccaaagtactccccaacatctccgaagtattcccctacctctcccacctactcccca
acgacgccgaaatacagccccacctctcctacctactctccgacctctcccacctacacc
cccaccagccccaaatactccccgacctccccgacttactccccaacctcacccaagtat
tcacccacgtctcctacgtactcgccaactagtcctaaaggctccacctacagccccacc
tcccctggatacagccccacctcacccacctacagcccggccatcagccccgacgacagc
gacgaggagaccaactga
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