Hippoglossus stenolepis (Pacific halibut): 118102426
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Entry
118102426 CDS
T08308
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04382
Cornified envelope formation
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118102426 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118102426 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118102426 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118102426 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118102426 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118102426 (col4a6)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118102426 (col4a6)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118102426 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118102426
NCBI-ProteinID:
XP_035004471
LinkDB
All DBs
Position
23:2521469..2602055
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AA seq
1691 aa
AA seq
DB search
MKFLICVVVVALAVRSAHGGTDFDEPCAGRDCSRGCKCNPEKGSRGRPGPLGDVGQSGPE
GPRGTLGPVGPKGEKGQIGLRAPSGPKGDKGPMGVPGFQGTDGVPGHPGLEGGRGLPGPD
GCNGTRGEPGDPGYGTGSPGYTGPAGPLGIKGQKGEPRYFSNGGSGSYPGQPGPDGRPGI
RGPDGPSGSPGPQGPEGYSGPPGPPGPPGLMGSRSDGYQGEKGDKGDSGLPGPSGTPGDG
SLRSEQTLTIYKGDKGEPGFKGVQGLAGNPGQPGPFSYRGEVGEKGIPGYPGARGAPGFN
GPPGAPGQQGYGGNPGFPGQPGYIGPKGDLGDPGPPGPSVYVNGPSNYVQGLPGDPGLNG
LPGAPGDGGSPGYPGPPGPPGSVLDPTGRGGTPGFPGIPGPKGEKGNGGLPSYGQEGRPG
SSGLPGAQGPRGPPGPTSSTGDRCIIYPKGSAKGTGYAGQPGLPGSRGQPGGTGYNGLRG
DPGDCNCRGGGTTGLPGLRGPPGVNGGPGFGGRKGDSGDPGSPGFGGGQGPPGRQGGPGF
FGRKGEKGASYYRGPDFGVKGELGTPGPRGPNGETGKPGRDGLPGFPGGPGPPGDGGYGT
VGEKGFPGYPGAKGRPGGPGYPGSGSGGAPGTRGADGDPGIPGSPGSTGAPGPPGQSRSC
DTADAGDPGLPGLPGRPGPKGRPGSSNQPGRPGFDGSKGDRGEPGTGGQPGSPGFPGPRG
DSGGPGNPGQGFDGGRGKDGLPGRPGAKGQPGEVLGATPGVPGRDGSPGLPGDKGQPGTP
AGPGSPGFDGRSGVPGLKGERGVDGLPGFPGSPGPPGEPRGGIPGQPGLPGSKGLGGSPG
CQGYPGRKGDIGDPGFPGPAGMKGTPGQPGTPGSPGSRGTPGPPGPGTRDGIPGIPGRKG
ERGFPGLMGFPGLPGRPGSPGFPGGKGLPGGPGRDGLPGGPGYHGQKGERGYTGRSGLPG
IPSRLGYVEKGDPGNPGSSALPGFPGPRGDKGLPGLPGRQGLPGLPGYAEQSKGQPGEPG
YPGRAGGPGYPGPKGEAGIMGFPGMSGARGDDGGTGFPGNPGEPGRPGAKGIPGETYGYP
GGPGSKGQPGDSGFPGGRANDGAPGDNGFPGSPGYSGAKGAPGEGGRPGITGSPGFPGPK
GQSFYPGRRGQDGGPGLPGSPGGPGAKGLSGSPGLDGLNGLGGPKGLPGTPGGNAGGIPG
TPGIPGLKGERGVSYPGAPGYPGGKGERGDPGGSGLPGFPGRPGLPGENVGSNFPGPTGD
PGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDPGLPGFPGSPGRKGETGGPGGPGSPGF
PGIKGERGESGYSGGPGLKGFNGDSGYYGNKGAKGLRGRTGRKGYPGASLPWIPTDRPLG
ELGFPGDGGTPGSPGEPGQPGESGPSGAKGPPGPVGKLGRTGSTGPSGTVGDGGPPGFPG
PTGDQGLPGNTGRPGLPGGVGRGSSIGYTLVKHSQDAQVPMCPQGMAQLWEGYSLLYVEG
QEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRNDKSYWLSTTAPIPMMPVAEEQ
IRPYISRCSVCEAPSQAVAVHSQDMNIPSCPPGWRSLWIGYSFLMHTAAGAEGGGQSLVS
PGSCLEDFRATPFIECNGAKGSCHYFANKYSFWLITVDPSQEFRYSPVQETLKGGQERSR
VSRCQVCSKLL
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgcgtggtcgtggtcgccttggcggtgagatctgcgcacgggggc
acagactttgacgagccgtgtgcggggcgggactgcagcagaggatgcaagtgcaaccca
gagaaaggcagcaggggtcgacctgggcctcttggcgacgtgggtcagagcggaccagag
gggccccgcggcaccctggggccggtggggcccaaaggagagaagggccaaatcggcctg
agggccccatctggtcccaaaggagacaaaggaccgatgggagttcctgggttccaggga
actgatggagttcctggtcaccccggtctggagggcggcagagggctacctggtccggac
ggttgtaacgggaccagaggagaacccggggaccccggctacgggacaggatcacctgga
tacactggacctgctgggcctcttgggataaagggccagaaaggagaacctcgatacttc
tcgaatggcggcagcgggagttatccaggacagccgggacccgacggtcgacctggaatc
cgaggtcccgatggtccgtctggttcacctggtcctcaaggacctgagggatactcgggt
cctcccggcccccccggccccccagggctgatggggagtcgcagtgacggatatcaagga
gagaagggagacaagggcgactcaggtctccccggacccagcggcacccccggcgacggg
tcactaagaagtgaacaaactctcactatctacaaaggagataagggggaaccaggattc
aagggcgtccaaggattagctggaaaccctggtcaacctgggccgttcagttatcgaggt
gaagtcggagagaagggcattcctggataccccggggcgagaggcgctccaggtttcaac
ggcccccccggcgctcccggacaacagggatatggcggtaacccaggtttccccgggcaa
ccaggatacatcggacccaagggagacctgggagaccccggaccaccaggaccctccgtc
tacgtgaatgggccgagcaactatgttcaaggactaccaggtgacccaggacttaacggc
ctgcctggcgcccccggtgacgggggatctcctgggtatccaggaccaccagggccacca
ggatccgtgctggaccccacaggtcgtggtggcaccccaggattccccggcatcccgggc
cccaagggagagaagggtaacggcggtctaccaagctacggccaggaaggacggccaggc
tcctccggtttgcccggagcccagggcccccgcggacctccaggccccacgagctcgaca
ggcgatcgctgtatcatctaccccaaaggttcagcaaaaggtaccggatacgctggacag
cccgggctgcccggctcccgaggacaacctggtggcaccggttacaatggcttaagagga
gatcctggcgactgtaattgtagaggaggaggcactacagggttaccagggttacgcggc
ccccccggagtcaatggcggccccggcttcggaggacgaaagggagattctggtgacccc
ggctcacctggctttggtggcggtcagggacctcctggtcgacaaggtggaccaggtttc
tttggccgtaagggagagaagggggcgtcttattaccgcggcccagattttggagtgaag
ggagaactcggaactccagggcccagaggacccaacggtgaaactggaaaacctggcaga
gacggactacctggcttcccaggaggccccgggcctccgggtgacggcggctacggcaca
gttggagagaaaggtttcccaggatacccgggggctaagggtcgtcccggaggccctggc
tatcccggtagcggcagcggcggagcgccaggcactcgcggagctgatggagatcccgga
atacctgggtcaccagggtcaactggtgcacctggaccgccaggccaatcgcggagctgc
gacacagctgatgcgggagaccccggtttacccggtttacccggacgaccaggcccgaaa
ggtcgaccaggttcctcaaaccaaccaggacgtcccgggtttgacggatccaaaggagac
agaggagaacccggtactggaggtcaacctggatcaccaggtttccctggacccagaggt
gattctggaggtccaggtaacccaggacaaggttttgacggaggccgggggaaggatggc
cttcctgggcgtccaggagccaagggccagcctggagaggtactgggagccacgcctggt
gttccggggcgtgacggttcaccgggacttcctggagacaagggccaacctgggacgccg
gcaggacctggatcacccggttttgacggacgctcaggcgttcctggactaaagggagag
cgcggcgttgacggtcttcctggttttcccggctcccctggacctccaggtgagccgaga
ggcggcatccccggtcaaccgggacttcctggcagcaagggactgggcggatcaccaggc
tgccaaggttaccccgggcgcaagggagacataggagacccaggattcccagggcctgct
ggcatgaagggaaccccaggacagcctggcacccctggttctccagggtccaggggaacc
ccaggacctccaggaccaggaactagagatggaattccaggaatcccaggaaggaagggt
gagagaggtttcccagggctgatgggtttccctggactaccagggcgccctggtagtcca
ggcttcccaggaggcaaaggactgcccggagggcctggaagagatggacttcctggtgga
cctggataccacggacagaaaggtgagcggggatacaccggccgctcaggcttgcccggc
atacccagtcggttaggttatgtggagaaaggagaccccggaaaccctggaagcagcgca
cttcctggcttccccggacccagaggtgacaaaggtctgccaggtctgcctggtcgtcag
ggtctgcctggacttcctggttatgcggagcagagtaaaggacagccgggtgagcctggc
taccccggacgcgctggaggtccaggataccctggaccgaagggagaggctggaatcatg
ggattccccggcatgtccggagcaaggggtgatgatggtggaactggtttccctggtaac
cccggagaacctggtcgacctggtgccaagggtatacccggggaaacttatggttatcct
ggaggtccaggttctaaaggtcagccaggagattcaggcttcccaggtggtcgtgctaac
gacggcgctcccggtgacaacggctttccaggaagtccaggttactctggagcaaaggga
gctcctggtgaaggaggacggcctggaataacgggctcccctggtttccccggaccaaag
ggtcagtccttctacccaggacgaagaggacaagacgggggacctggtctgccgggaagt
cctggaggacctggagccaaaggtttgtctggatcccctggtttggatggacttaacggc
ctcggaggacctaaaggcctccctggaactccgggtggaaacgcaggaggtattccaggt
accccgggtattccagggctgaagggagagaggggcgtctcctacccgggagctcccggc
tatcctggagggaagggagagagaggagacccaggtggttctggactcccaggattccct
ggtcgacctggacttcctggtgagaatgtggggtccaatttccccggacctacgggagat
cctggactccctggactggatggagagtatggtttccagggtcctccaggtccacccggg
ccccctggtccaggcacagcacagggagacagaggtgaccctgggctgccaggcttccct
ggctcccccggcaggaaaggagaaactggaggccctgggggccccggaagccctggtttc
cctggtatcaaaggggaacgaggtgagagtggttacagcggaggtcctggtctaaaaggt
ttcaacggtgactctggttactatggaaacaaaggagccaagggattgcgagggcgtact
ggtcgtaagggttaccccggagcttcgctgccatggataccaactgatcgacccttggga
gaattgggtttcccaggcgatggcggaacccctggttcccccggagagcccggtcagcct
ggagaatccggaccctcaggtgctaaaggtcctcctggccctgtgggtaaactgggcagg
accggatctactggtccttctggaactgtcggtgacggcggaccacctggtttcccgggg
ccaactggagaccaaggtcttcccggtaacaccggtcgccccggccttcctggcggagtc
ggtcgtggctccagcatcggctacacgctggtgaagcacagccaggacgcccaggttccc
atgtgtcctcagggcatggcccagctgtgggaaggctacagcctgctgtacgtggagggg
caggaaaaggcccacaaccaggatctcggtcagccgggctcgtgtctccccaggttcagc
accatccccttcctctactgctcccccaacgaggtctgctactacgccagccgcaacgac
aagtcctactggctctccacaaccgcgcccatacccatgatgcccgtggccgaggagcag
atccgaccttatatcagcaggtgttcggtttgtgaggcgccgtctcaggctgtggccgtc
cacagtcaggacatgaacatccccagctgcccccccggctggaggagtctctggatagga
tactccttcctgatgcacacggcggcgggcgcggagggcggcggtcagtccttggtgtct
cccggctcctgcctggaggatttccgcgcaacgccgttcatcgagtgcaacggcgccaag
ggctcctgccactacttcgccaacaagtacagcttctggctcatcaccgtggatcccagc
caggagttccgctactcgccggtgcaggagaccctgaagggaggccaggagcgctccaga
gtcagccgctgccaagtctgcagcaagctcttgtag
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