Hippoglossus stenolepis (Pacific halibut): 118102448
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Entry
118102448 CDS
T08308
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118102448
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118102448
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118102448
NCBI-ProteinID:
XP_035004524
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Position
23:complement(9163428..9309842)
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AA seq
697 aa
AA seq
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MEIAKARGASKCVEKMEKVAPEKRGHRRTTLLNIISSLCSVASVAFCVLLSINAADIQNR
VVDLESVNGGQTLIRAPGSSMDDLSSLVQQRVDELLSQRSYENFVKIRTARQTSPECNCP
PGPPGKRGRRGRDGEPGPSGTPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLI
KGDQGQAGAPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLAGDLGQPGEIGPVGPEGPEGQ
KGSFGLPGSPGDDGLKGDVGIPGLDGIPGVKGEIGERGEKGDMGEDGPKGDMGEKGDAGS
SAAGIKGEPGEPGRSGYKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDH
GPPGKGERGEIGYVGPKGSQGETGTPGNKGSKGETGDKGDLGTFGPKGPPGQKGDQGATE
IIDYNGNIQEALQKITTITVTGPPGPPGPIGPQGVKGDRGLPGLPGLDGERGYKGSKGDM
GMPGASGEKGGSGLTGLPGVNGGKGEKGDLGLPGTQGTSIIGSPGPLGPHGPPGPMGPHG
FSGSKGEPGLHGLKGMRGELGHKGDRGPLGLPGASGLDGKPGIGGMDGPSGPAGPAGPKG
DIGERGAQGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDDGERGEKGEKGKKGKKGPKG
EKGEQGAPGLDAPCPLGPDGLPIPGCWQKGITPWLVA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcgaaggcaagaggagcatcaaagtgcgtggagaaaatggagaaagtggcg
cctgagaagcgagggcatcgccgcacaacactgctgaacataatctcgtctttatgttca
gtggcgtccgtcgccttctgcgtccttctgagcattaacgcagcggacattcagaaccgg
gttgtggatttggagagtgtgaatggcgggcagaccttgatccgcgcccccggttcctcc
atggatgacttgagctcactggttcaacagagagttgatgagctgctctcgcagcgctcc
tatgaaaattttgtcaagattcggactgccagacaaacctcacctgaatgcaactgccct
ccaggacctccgggaaagcgaggaagaagaggccgcgatggagaacctggaccttctggt
actccaggtccaaagggtgaaaagggggatcaaggcgaccagggaccacggatggtcttc
cctaagatcaatcatggctttctttccgctgaccagcagctcataaagcgacgtctcatt
aagggagatcaggggcaggcgggagcgcctgggcctccggggccaccgggccctccgggg
ccgagggggcctccaggggacacggggaaagatgggcccagaggtgtgcctggactagca
ggtgatctggggcagcctggagaaataggacctgtggggcctgaggggccagaagggcaa
aagggttcctttgggcttcctggaagcccaggtgatgatggactgaagggggatgttgga
atcccaggattggacggtatccccggagtcaagggtgaaataggagagcgaggtgaaaag
ggtgatatgggtgaagacggtccgaaaggcgatatgggggagaagggagacgcaggctcc
tctgcagctggcatcaagggtgaacctggagagcctggacgaagtggatacaagggagag
ccaggacttccagggctgcctggactcccagggataaagggtgagcctgggttcctcggc
ccccagggagagccagggcttcccggactcccaggaacgaagggtgagagaggagaccac
gggccaccagggaagggtgagcgcggagaaattggatatgttggaccaaaggggtcacaa
ggagagacgggtacacctggtaataaagggtcgaagggggagactggagataaaggagac
ttgggaaccttcggcccgaaggggccccctgggcagaaaggagaccaaggggccactgaa
atcatcgactacaatggaaacatacaggaggctttacagaagattaccactattacagta
acggggcctccagggcctccggggccaatcggacctcagggtgtaaagggggatcgaggt
ctgcctggtctccctggactcgatggagaaagaggctataaaggttcaaaaggagacatg
ggaatgcctggagcttcaggggagaaaggaggatctggtttaactggtctacctggtgtg
aatgggggaaagggggaaaagggagacctgggtctacctggtactcagggtacttccatt
attggctctccagggcctctagggccccatggaccaccaggacccatgggaccccacggt
ttctccggatcaaagggtgaacctggattgcatggtttgaaggggatgcgaggggaactg
ggtcacaaaggggatcgcggacctctgggtctccctggagcctccggcttggacggcaag
cccggaattgggggaatggatggaccgtcgggtccagctggtcccgctgggccaaagggc
gacataggtgagagaggagcacagggtgagccaggaccgaggggaccttatggactacct
ggagctgctggaacaccaggcttggacgggttgccgggcttaaggggagagaaaggcgac
gatggggaaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcctaagggg
gagaaaggagaacagggtgcccctggattagatgcaccctgcccattgggcccagatgga
ttaccaatacctggatgctggcagaagggaatcacgccatggctggtagcctga
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