Hippoglossus stenolepis (Pacific halibut): 118102572
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Entry
118102572 CDS
T08308
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04382
Cornified envelope formation
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118102572 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118102572 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118102572 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118102572 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118102572 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118102572 (col4a5)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118102572 (col4a5)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118102572 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118102572
NCBI-ProteinID:
XP_035004745
LinkDB
All DBs
Position
23:complement(2486695..2519146)
Genome browser
AA seq
1689 aa
AA seq
DB search
MKTDARSPRQLAAPLLFFLALCVAVQRSDSAACHGCVGSKCDCSGVKGGKGERGFPGLTG
QPGVPGFPGPEGPIGGRGETGNNGPQGPGGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPG
PRGIAGCNGTKGDRGFPGNSGIPGQQGLSGPPGLPGSKGDPGDVISTNRFGDTGGSGLPG
LPGVPGSPGSSGSPGPLGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGEKGELGLPGP
AGPPGQVGEQQRPPETEIQRGDKGDPGVPGFQGDRGYPGPPGPSGGQKGGKGEPGELGKR
GKPGKDGDPGPNGYPGGKGDSGLPGPPGRDGERGLKGDRGFAGPPGQVLGGQTGGGVGPK
GESGYPGSPGLKGDRGPAGLTGPPGAPGRSAIGGSGQPGPPGFPGERGQKGEGGAPGVSI
PGSPGRSGSPGLQGPEGPAGPPGFSSGGTNCITGEPGRPGVTGERGYPGESGQKGDKGET
CVNCFGGTNPIPGATGPPGPPGFPGTPGSLGLKGDRGYPGGPGNVGTPGGPGPQGSPGFP
GEKGDPGDAIAVTGVRGDKGDSGFPGSPGLPGLDGRPGRDGQPGSPGPKGSSGSLQVKGE
RGLPGESGSPGNPGDRGSPGPSGYGPQGPSGEKGNQGVSGRPGGPGFPGPKGEPSQTVGE
KGSPGPSGRDGQPGGAGLPGEPGAAGQPGFPGLQGGKGEPGFPGIGLPGSPGSKGFPGIP
GQPGSPGGPGRPGVDGFPGQPGIPGSKGDPGFGLPGPPGLPGVPGSKGFFGPKGDPGFPG
GPGSPGRSGFDGGPGSKGEPGSSGIPGARGPPGLPSSGSFGLPGAPGPQGPMGPPGFPGS
NGGKGDPGPPGLDIPGLPGDRGSSGFPGSSGPAGTPGPPGGPGRDGVPGSPGPKGDMGSM
GTPGPSGGPGGPGGPGASGLKGEPGFSGRDGGPGGSGTKGDRGDPGLPGPPGPSHPGEAH
KGTKGEPGPSGGSGYPGQKGISGLPGDPGLSGSDGRPGLSGPPGPKGDPGISGGPGGPGA
SGLKGGMGEMGFPGPGGQKGLPGQPGRSGTPGQPGGPGFPGGKGDPGSAGVGPPGPSGFK
GEPGQPGFPGSPGLKGTPGTSGLPGLPGGPGSKGDPGLPGFQGSPGIQGPKGLDGGPGSP
GLNGAPGRPGESGRSGGPGFPGDKGQAGRDGIPGPAGVKGEPGLPGFGGPGTSGLPGFPG
SKGDPGLPGASGSSGFPGTKGDAGFPGSPGPSGNSGPPGPPGLAVPGPKGLHGPPGPPGR
AGPSGPPGPGGPQGPRGPAGSGGVKGETGISGAPGQNGFPGQKGDSGVPGFPGTSGLPGG
SGIKGDVGLPGVPGFPGSKGDPGIPGGNGLTGDPGDLGPTGPPGDPGTSQPTEYVKGERG
PPGSQGRPGGSGLPGSPGSNGLPGRPGNPGDPGTEGPPGFSGPSGRKGDTGPAGLPGTRG
YPGPPGSDGPQGQPGLPGTASAAHGFLITRHSQGQEVPICPDGTSSIYDGYSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMDPLRGES
IKPYISRCSVCEAPAMVIAVHSQTIQIPSCPRNWEALWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGSGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVS
RCVVCMKRT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagacgcgaggagcccgcgccagctcgccgcgccgctgctcttcttcctcgcc
ctgtgcgtcgcggtgcagcgatccgactctgcggcttgccatggatgtgttggatccaaa
tgtgactgcagtggagtgaaaggaggcaaaggtgaacggggtttcccaggtctcaccgga
cagccaggggtcccagggttccccggacccgaggggccgatcggaggcagaggagagacg
ggcaacaacgggcctcaaggaccaggcggtccaaaaggaatcagagggcctccaggatta
ccaggatttccaggaacaccaggtcttccaggtctgccgggtcaggacggacctccgggc
ccgagaggcatcgcaggatgcaacggaacaaagggtgaccgaggtttcccaggaaattca
gggatcccaggacagcagggtctgtcgggaccaccaggtctgccggggtcaaagggagat
ccaggagacgtgatctccaccaatcggtttggagatacaggaggatcgggtttaccgggt
ttaccaggagttcctggctcgccggggtcctctggttctccaggtccactcgggccccca
ggacccagaggttatgagggtcgttcaggtcctcccggtcctccaggacccaagggaaac
atgggtttgaacttccaaggccccaaaggagagaagggagaactaggtttgccaggaccc
gctggtcctccaggacaggtgggagaacagcagaggcccccggagacggagatccagaga
ggagacaagggcgacccgggagtcccgggctttcaaggtgatcgaggttatccaggtccg
cccggcccctccggtggacagaagggaggaaagggcgaaccgggagagctaggaaaacga
ggtaaaccaggcaaagatggcgaccccggtcctaatggatatccgggaggcaaaggagac
tcaggcctgccaggtcctccaggcagggacggagagagaggtctgaaaggagatcgtgga
ttcgcaggcccacctggacaggtgcttggcgggcagaccggaggtggggtgggtccgaaa
ggtgagtccggttaccccggatcccccggactcaaaggagatcgaggaccagcaggttta
acaggaccgcctggagcaccaggacgttcagccatcggcggcagcggtcaacctggacct
ccaggtttccccggagagagaggtcagaagggagagggcggcgctccaggggtctctata
ccaggatccccaggacgctcgggatctcctggtctccagggaccagaggggcctgctgga
cctccaggcttttccagcggcggaacaaactgcatcaccggagaacccgggcgtcccggt
gtgacgggagagcgaggttaccccggagaatcgggtcagaaaggtgataagggcgaaacc
tgcgtgaactgcttcggtggcaccaacccgatcccaggagccacaggacctcctggacca
cctggattcccaggaactcctggcagcctgggattgaaaggagacagaggatatccgggg
ggtcctggaaatgtcggcacccccggtggccccggccctcaaggttccccagggttcccc
ggagagaagggtgacccaggtgatgccatcgcagtcactggtgtgcggggagataagggg
gactctggcttccccggatcccccggtctgcccggcctggacggtcgacctggtcgtgat
ggacaacctggatccccggggcccaaaggatcttctggctcactgcaggtaaaaggagaa
cgaggactccctggtgagtcaggttctcctggtaatccaggggacaggggttcgccaggt
ccctccggctatggacctcaagggccttccggagaaaagggtaaccagggcgtctcggga
agacctggaggtcctggttttcctggtcctaaaggtgaacccagccagacggtgggagag
aaaggttcaccaggacccagcggacgggatggacagcctggaggcgccggtctaccaggt
gaaccaggtgcggctggacagccaggtttccctggtttacagggagggaagggtgaacct
ggcttccctggcatcggactccctggatccccaggatctaaaggattcccaggtatcccc
gggcagccaggatctcctggaggaccaggcagacccggagtagacggattccccggccag
cctggaattcctggatccaagggcgaccctggcttcggacttcccggcccacctggttta
cctggagtacccggatctaaaggtttctttggaccaaagggagatcctggtttccccggt
ggccctggttcaccaggaagatctggatttgatggcggcccaggatccaaaggcgagccc
ggttcatctggtatccctggagctcgtggcccccctggactcccgtccagtggctcattt
gggctcccaggcgcccctggacctcagggcccaatgggaccaccaggattccctggatca
aacggagggaaaggtgaccccggccctccaggtctcgacatcccaggtttgccaggagac
agaggaagttccggtttcccaggttcttcaggaccagccggaaccccaggacctcctgga
gggcctggacgagatggcgtgcctggatcaccaggtccgaaaggtgacatgggttccatg
ggaaccccaggaccctccggaggaccaggaggcccaggaggacctggtgctagtggactt
aaaggtgaacctgggttctcaggtagagacggtggtcctggtggttctggcactaaagga
gataggggtgaccccggtctcccaggacccccgggtcccagccacccaggagaagcacat
aagggaaccaaaggagagccaggaccttcaggtggatcaggttatccaggtcagaaaggt
atcagtggtctcccgggagacccaggactttcaggatcagatggtcgccctggactctcc
ggaccaccaggtcccaagggagatcctggaatctcaggaggcccgggaggacctggagct
tcaggactgaagggcggcatgggagaaatgggatttcctggaccaggaggacagaagggt
ctacctggtcagccaggtcggtcaggaaccccgggacagcccggaggacctggtttcccc
ggaggcaaaggtgacccaggttctgccggagttggaccacctggaccaagtggattcaag
ggtgagccaggtcagcccgggttcccaggaagtccaggactcaaaggaactccaggaaca
tccggtctcccaggtttacctggaggtccaggttccaaaggtgatcccggcctcccagga
ttccaaggttctcctggtatccaaggtcctaagggtcttgacggtggtcctggctcccca
ggtctcaacggagcacccggtagaccaggagagtctggccgatctggagggccaggtttc
ccaggagataagggtcaggcaggtcgtgatggaatcccaggaccggctggagtcaaagga
gagcccggacttcctggtttcggtggccccggtacctctgggcttccagggtttccaggg
tcaaagggagacccaggtcttcccggcgcctctggcagctccggtttccccggcactaaa
ggagatgctggcttccctggttcccctggtccttcaggaaacagcggccctcctggccct
cctggactggctgtcccgggccccaaaggactccatggtccccctggaccaccaggacga
gcaggtccctcaggtcctccaggtccaggcggcccgcagggtccccgcggacctgcagga
agtggcggcgtcaagggagagacgggtatttccggcgctcctggccagaacggcttccct
ggacagaagggagactctggtgttccaggattcccgggtacctctggtcttcctggcggc
agcggcataaagggagacgtcggtctgcctggcgttcctggattccctggatccaaggga
gacccaggaatccccggtggtaacggtcttactggcgatcctggagatcttgggcctacc
ggcccccccggtgaccctggtacatctcagcctaccgaatatgtgaagggagagcgagga
ccccctggatctcagggccggcctggaggctcaggactgcctggttctcctggaagtaac
gggctcccaggtcgacctggtaaccctggagatcctggtaccgagggtccccccggcttc
agcggcccgtccggcaggaaaggagacacaggacccgccggtctgcctggtacgcgtggt
tatcctggtccccctggttccgacggtccacagggtcagcctggtctcccaggaacagcc
tctgcagcccacggcttcctgatcacccgacacagccaaggtcaggaggtgcccatctgc
cccgacggaacaagcagcatctacgacggttactcgctgctgtacgtgcagggcaacgag
agggcacacgggcaggacctgggcacggcgggcagctgtctccgcaggttcagcaccatg
cccttcatgttctgcaacatcaacaacgtctgcaacttcgcctcccgaaacgactactcc
tactggctgtccacgcccgagcccatgcccatgtccatggacccgctccggggggagagc
atcaagccttacatcagcaggtgctcagtgtgtgaagctccagccatggtgatcgcggtg
cacagtcagaccatccagatcccatcgtgcccgaggaactgggaagctctgtggatcgga
tattccttcatgatgcacaccagtgcgggtgcagagggctccggtcaggccctggcctcc
cccggctcctgcttggaggagttccgcagcgctcccttcattgagtgccacggcagcggc
acctgcaactactacggcaactcctactccttctggctggccactgtcgaaccctctgag
atgttcaggaagccacagtcggagactctgaaggccgggaacctacggacgcgcgtcagc
cgttgcgtggtctgcatgaagaggacgtaa
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