Hippoglossus stenolepis (Pacific halibut): 118102605
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Entry
118102605 CDS
T08308
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118102605
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
hsp03310
]
118102605
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
118102605
Nuclear receptors [BR:
hsp03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
118102605
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
MIOS_a-sol
Motif
Other DBs
NCBI-GeneID:
118102605
NCBI-ProteinID:
XP_035004838
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Position
1:2438403..2486831
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AA seq
546 aa
AA seq
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MESPPQDSGSEPGRSGSEPGTPLTETPLSVEAERGREQQTPGRSVCSSGSSKGLSVAVKK
THTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSR
NRCQHCRLQKCLTVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQQQQQQQQQQGPPL
MSHPGLNSPSPGDTEPLSPQYGLSSSGLTELPDELGGYMEQNSPEGGSVSSKTDSGGEGG
GGLFYLDIQPSPDQSGLDINGIKPEPLCDYGSGNGFFPYCSFTNGDTSPSESMTELDHLV
QIISKSHLETCQYLREELQQMSWQNFLQDEVQSYQSKPREVMWQLCAVKITEAIQYVVEF
AKRIDGFMDLCQNDQIVLLKAGSLEVVLVRMCRVFDSQNNTVYFDGKFAGPDVFRALGCD
DLITSVFDFAKSLCSLHLTEDELALFSAFVLLSADRSWLQEKLQVEKLQQKTELALQHVL
QKNHRGDAVMNKLRCKVSALRSLCSRHSEKLTAFRTVYPDVVRTHFPPLYKELFGVDLEV
TPPADD
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgcccccgcaggattcagggagcgagccgggcaggagcggctctgagccgggc
acaccgctcacagagacgccgctgagtgtggaggctgagcggggcagagagcagcagacg
ccgggcaggagtgtgtgcagctcgggctccagcaaaggtttgtcagtggcggtgaagaag
acgcacacatctcagattgaaatcattccctgtaaaatctgtggagacaaatcttcaggg
attcactacggggtgatcacctgcgagggctgtaagggtttcttcagacgcagtcagcag
agtaacgccacctactcgtgtcctcgccagaaaaactgtctgatcgaccgaacgagccga
aaccgctgccagcactgccgtctgcagaaatgtctgactgtgggcatgtcccgagacgcg
gtgaagttcggtcgcatgtcgaagaagcagcgggacagtttgtacgctgaggttcagaaa
caccggctccagcagcagcagcagcagcagcagcagcagcagcagcaggggccccccctc
atgtcccaccccggcctcaacagcccgagccccggagacaccgagccgctctccccccaa
tacggcctctcgtccagcggcctcactgagctccctgatgaactcgggggctacatggag
cagaactcccccgaaggaggatccgtctcatccaagacggactctggaggagagggagga
ggaggattgttctacctggacattcagccctcacccgaccaatcaggactggatattaac
ggcatcaaaccggagccactgtgcgactacgggtccggaaacggcttcttcccatactgc
tccttcaccaatggagacacgtcgcccagcgagtccatgaccgaactggatcatctggtc
cagatcatctccaagtctcacctggagacgtgtcagtacctgagggaggagctgcagcag
atgagctggcagaacttcctgcaggacgaggtgcagagttaccagagcaagccgagggag
gtgatgtggcagctctgcgccgtaaagatcaccgaggcgatccagtacgtggtggagttc
gccaaacgcatcgacggcttcatggatctgtgccagaacgatcagatcgtgctgttgaaa
gctggatctctggaggtcgtcctcgtccggatgtgtcgagtgtttgactcgcagaacaac
accgtttactttgatgggaaatttgcaggtcctgacgtcttcagagcgttaggttgtgat
gatttgatcacgtcggtgtttgactttgctaagagcttgtgttcactgcacctgacggag
gacgagctcgctctcttctcagcgttcgttctgctctcggcagaccgctcttggctgcag
gagaagctgcaggtggagaagctgcagcagaaaactgagctggctctgcaacacgtcctg
cagaagaaccacagaggagacgcagttatgaacaagctcagatgtaaagtgtcagcgctg
cgttcactgtgcagtcggcactcagagaaactgacggcgttcagaaccgtttaccccgac
gtggtacggacgcacttccctcctctttacaaggagctgtttggtgtcgacctcgaagtt
acgccgccggccgacgactga
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