Hippoglossus stenolepis (Pacific halibut): 118102699
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Entry
118102699 CDS
T08308
Symbol
si:cabz01101003.1
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase CYLD
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04217
Necroptosis
hsp04622
RIG-I-like receptor signaling pathway
hsp04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
118102699 (si:cabz01101003.1)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118102699 (si:cabz01101003.1)
04625 C-type lectin receptor signaling pathway
118102699 (si:cabz01101003.1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hsp01002
]
118102699 (si:cabz01101003.1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118102699 (si:cabz01101003.1)
Enzymes [BR:
hsp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
118102699 (si:cabz01101003.1)
Peptidases and inhibitors [BR:
hsp01002
]
Cysteine peptidases
Family C67
118102699 (si:cabz01101003.1)
Ubiquitin system [BR:
hsp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
118102699 (si:cabz01101003.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
DUF7571
Motif
Other DBs
NCBI-GeneID:
118102699
NCBI-ProteinID:
XP_035004969
LinkDB
All DBs
Position
23:complement(1596252..1603753)
Genome browser
AA seq
968 aa
AA seq
DB search
MSGAQEQLRRRRPPKMFVISTDLKVQDHLDGTIRLQRGFICQEQDVSRNRGEWQWVKVLD
NDVVVKLDRKFLLPIPSDLNGLLEPVFDPEARLRLLTNLGKLRHLSSLPVDAPLWVQMGQ
QDELAEAELKYIGPLTRGSSAVYFGVQLKGSAAGKGSGNGSYKGLRLFTCPDACALFVPA
NEIRLRHWNNRNGSNAPERVRERDQHRSSNNHHSNGHQSNNSHPSHHHHQQQQQQHHPSS
SAPQPHSIGILPRTSESALITAQTLAQVRQPASPASPPLPPPLSVGQRVCFPLEDNVYGG
XVRFCGLLPGRSSSGLYVGVLLDAPVGNWDGLYRGEKLCHIPSTVYGLLLPATKVSSEPK
HNRPSAHQMPKSILKPPPDTKPGLISSPTTAPKVAPLPPPKPTKKPLLPPPLPPPKPRSP
TSPILSEQLQHTNGVHGPVSPLLSPDRLEASGEGEEAGLEGELEVGSMVEVNDPPIFGVI
CWIGRISGISEPVAGIELDQELSAGTDGSYLGVRHFRCPANKGLFVKLRNCRRDSRFPAP
ETPVNQVERCNSIAFAEWGSERVEEHTPPVDGDEARELYQGWKRGIQGHLNSCYLDATLF
SLFSCCSSADWVLFWPADSDTDQSSTQAQDLLRCEIVNPLRSFGYVCASKTMALRRLLEA
ADRDTGFTNQEKDPEEFVNRLFQLLRVEPLLKIRSMTRQPQECHLYQLFPPTLPSSPSSP
APLSPVDSPIPLSSPSSNRMRVASVQTLLESSFLHAGLKFVEAPSCLLLLMPRFGKDFKM
FDAILPTLSLDITDLLDDTVRQCSICQAVAEWECLQCYEDVDITPGRLKQYCPTCNTQVH
SHRKRTSHTPVKVGVPGRSWTGPLHCTRQRMSLFAVTCIETSHYVSFIKHGPLPTDWLFF
DSMADREGGENGFNIPRVMACPEVGRYLGLSEQELSRVDAASLREPARRLLCDSYMCLYH
SPELSLYK
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggctcaggagcagctcaggaggcgtcgccccccgaaaatgttcgtgatctcg
accgacctgaaggtccaggaccacctggacggaaccattcggctgcagcgggggttcatc
tgccaggagcaggacgtgagcaggaaccgaggggagtggcagtgggtcaaggtgttagac
aatgacgttgtggtaaagttagacaggaagttcctgcttccaatcccgagtgacctcaac
ggcctgttggagccggtgttcgatcccgaggctcgtctgaggcttctaaccaatcttggg
aagctgcggcatctgtcctctctgcccgtcgacgctccgctctgggtgcagatgggtcaa
caggacgagcttgcagaggccgagctgaagtacatcgggccgctgaccagagggagcagc
gctgtgtacttcggggtccaactcaagggttcagcggcgggcaaaggatccggcaacggt
tcctataagggcctccgacttttcacctgccccgacgcctgcgcccttttcgtccctgcc
aatgaaattaggctccgccactggaataacagaaatggctccaatgcacctgagcgagtc
cgcgagcgggaccaacaccgcagcagcaacaatcaccatagcaacgggcaccagagcaac
aacagccacccgtcccatcaccaccatcaacagcagcagcagcagcatcatcccagcagc
agcgctcctcagccgcactctatcggcatcctccctcgcacatcggagtcggcgctcatc
actgctcaaaccctggcgcaggttcgacagcctgcgtcgcctgcgtcgcctccgctgcct
ccgcctctcagcgtcggccagcgggtgtgtttccccctggaggacaacgtctatggagga
nnggtgcggttctgcgggctcctgccgggccgctcctcctcagggctgtacgtcggcgtt
ctgctggacgctcctgtcggtaactgggacgggctttaccggggagagaagctctgccac
attccttccaccgtctacggactcctgctgccagccaccaaggtttcctcagagcctaaa
cacaaccgtcccagtgctcaccaaatgcccaaatccatcctgaagccccctcccgacacc
aaaccaggtctcatatcatcgcccaccactgctcccaaggtcgctccactgccgccaccc
aagcccaccaagaaacccctgcttccccccccgctcccgcctccaaaaccccgcagtccg
acgtcgcccatcctttcagagcaactgcaacacaccaacggcgtccacggccccgtctcc
ccgctgctgtctccagatcgcctcgaagcgtcgggggagggtgaagaggcgggactggag
ggggagctggaggtgggctcgatggttgaagtgaacgaccctcccatctttggagtgatt
tgctggatcgggcgaatcagtgggatttcagaaccagtcgccggaatcgagctggatcag
gagctgtctgcaggaacagacggcagctacctcggcgtgcgccacttccgttgtccggcg
aacaaggggctgtttgtcaagctacgcaactgcaggagggactccaggttcccggcaccc
gagacgcccgtcaatcaagtggagcgctgcaactccatagcctttgccgagtggggcagc
gagcgcgtggaggagcacacgcctcccgtggacggagacgaggccagagagctctaccag
ggctggaagagaggcatccagggtcacctgaactcctgctacctggacgctacgctgttc
agtctgttctcctgctgtagttcagcagactgggttttgttttggccggccgactctgac
accgaccaaagctcgactcaggctcaggacctgctgcgctgtgagatcgtcaacccgctg
cgcagctttggctacgtgtgtgccagtaagaccatggccctgaggcgcctcctggaggct
gccgacagagacaccggcttcaccaaccaggagaaagatcctgaggagttcgtcaacagg
cttttccagctcctccgagtcgagccgctcctcaagatcagatcgatgactcggcagcct
caggaatgtcacctctaccagctcttcccaccgacgctgcccagctctccctcctcgcca
gcacccctctcaccagtcgactcccccatccctctctcctcgccatcctccaatcggatg
agagtcgccagcgtccagacgctgctggagtcctccttcctccacgccggcctcaagttt
gttgaggccccctcctgcctcctgctgctcatgccccggtttgggaaggacttcaaaatg
tttgacgccatcttgcccacactcagcctggacatcaccgacctgctggacgacactgtg
aggcagtgcagcatctgtcaggctgtggctgagtgggagtgtctgcagtgttacgaagat
gtagacatcacccccgggcgtctcaagcagtactgccccacctgcaacacacaggtccac
agtcacaggaagcggacgtcccacaccccagtgaaggtcggtgtccccggcagatcgtgg
accggccctcttcactgcacccgccagcgaatgtctctcttcgctgtgacgtgcatcgag
accagccactacgtgagcttcatcaaacacgggcccctccccactgactggctgtttttt
gacagcatggcggacagagaaggtggcgagaacggcttcaacatcccccgggtgatggcg
tgtcccgaggtgggtcgctacctcggcctatcggagcaggagctgagcagagtggacgcc
gcgtcactgcgtgagccggcccgccgcctgctctgtgactcctacatgtgcctgtaccac
agccccgagctcagcctgtacaagtga
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