Hippoglossus stenolepis (Pacific halibut): 118102823
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Entry
118102823 CDS
T08308
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
hsp03015
mRNA surveillance pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118102823 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
118102823 (acin1b)
03015 mRNA surveillance pathway
118102823 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118102823 (acin1b)
03041 Spliceosome [BR:
hsp03041
]
118102823 (acin1b)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118102823 (acin1b)
Spliceosome [BR:
hsp03041
]
Complex C
Other components
EJC/TREX
118102823 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Pinin_SDK_memA
Rodlin
RRM_1
HeH
Motif
Other DBs
NCBI-GeneID:
118102823
NCBI-ProteinID:
XP_035005246
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All DBs
Position
23:4483386..4502700
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AA seq
1200 aa
AA seq
DB search
MADDDITLDGKPLQSLRVADLKAALEQRNLPKSGQKNALVKRLKGALMLENLQRSSSSHS
GLQPNSQIGEEMCQNSFIKQYLAKQQELLRQRLEREAQQEEDADESPAVPEEDEEHSEDN
DCYVSDKPHRPVPSQSNLTRAEERGGGASVMGHGMMAYNPDMGPSPTLHHHEPPEAAGAR
MQRAMGHKEPPAPSPPRAVASLSVRVLGKPDRQGLPPAVPRAQEKEGTAPSEPGSAHPVL
HLSRSAGVATGSNVIMDSDDDDGDDECEDDEDWGPGPGKARKANRVPPQPQQMPPSVPLA
GARSKRKLQPPQHIPPPQVHHTPMQLRHPTPPPSPPPDLFPLPDTPKQSPPDAENQEGEG
SQPAPRVDSVPLPTLQRQDSDSSSRSSSPDPPVKCRPGPLSLLVHKMESEGAFRASTEMS
EDAAHSTAGSSSESPLQKLERKRQQETREMEEERHLKKEKERERQLEQERERTKAQEQER
EKKRLEGEKEKERKRLEEEEKRHQKEEREKERKRQEEEKEKERKHQEDEKRREEKRLKEE
QDKRQQTAKKAWVVVTEPQDSGSSSDSDSKSDSSSRSSQSSSSRDKSSPARPLKKVKPGQ
EAEEEKNTNLSKEVEKRHLSKREVSEPSAAAVTEVEPDSESSMADQPASGAEPESSENRL
EESTTPKAFAARKISLTSSKTSPATADGGAGESETATAAGRKRRWGSSTAVTAKKPSISI
TTDSLKSLIPDIKVNQEAVVELHPEELQMSGDEENLDNSHSDQDKGLKIRRTVTQVVPGD
SQENGQTNEEEEVEKPEKEKPRRTSRDKRKNSLSEEAAESQTSVNLDVEAKKVTPSDSLV
RRSISQQKSGVSITIDDPVRAARQPSPPRGKISNIIHVTNLVRPFTLGQLKELLSQTGTL
VEDGFWIDKIKSHCFVTYTTAEEAVSTRSAIHGVKWPSSNPKVLSVDFCEQDELDFHKGV
LKPDKEEDHVPPPSAPQNRLPPLMPERERGVAGVRDLWAERQREMERRERARGEREWDRD
KVREFARPGEDGRRSRSRERERRRKERAKSKDKKSDKKEKGDEPPAKLLDDLFLKTKAAP
CIYWLPLTEDQATQRILDRKERQKERERRCKQQQEDEDKKREEERKERLKAREKEGGSGG
VTVSGGVAARGADGDRERDRGRDREPDKRRDSGQRPNRPSASTGSGRRSRSRSNPRDRRR
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgatattacgctcgacgggaaacctctacagtcgctgcgagtggcggac
ctgaaagccgcgctggagcagagaaacctgcccaagagcggccagaagaacgcgctggtc
aagcggctgaagggggctctgatgctggaaaacctacagaggtcatcctcctcccacagt
gggctgcagcccaactctcagataggggaggagatgtgccagaacagcttcattaaacag
tacctggccaaacagcaggagctccttcgccagagacttgagagagaggcccagcaggag
gaagacgccgacgaaagcccagcagtgccagaggaggatgaagagcactcggaagacaat
gactgctatgtctctgacaagccgcaccgccccgtaccttcccagtccaatctgaccaga
gcagaggagagaggaggaggagcgtctgtgatgggtcatgggatgatggcatacaaccct
gacatgggccccagtcccacccttcaccaccatgagccccctgaagctgcaggagcgagg
atgcagcgagccatggggcacaaggaacccccagccccctctcctcctcgtgctgtagcc
tccctgtcagtgcgcgtcctgggtaagccagaccgccaggggctgccccctgccgtgccc
cgagcccaggagaaggagggaactgccccgagtgaaccagggtcagctcatcctgtcctc
cacctgagccggtctgctggagtagcgacgggaagcaatgtcattatggatagtgacgat
gatgacggtgatgatgagtgtgaggatgatgaggattgggggcctggtcctggcaaagca
cgaaaggctaacagagtccctcctcagccacagcagatgccccccagtgtccctttggca
ggcgcaaggtccaagcgcaagcttcaacctccgcagcacatcccaccaccacaggtacac
cacacccccatgcagctgcgccaccccacgcctcctccctctccacccccagacctgttt
cccctccctgacacacccaagcagagtccaccagacgcagagaaccaggagggagagggt
tctcagcctgcaccaagggtggattctgtcccacttcctaccttgcagaggcaagactct
gactccagctctcgctccagcagccctgacccccctgtgaagtgtaggcccggacccctt
tctctgcttgtgcacaagatggagtcagagggagctttccgtgcatctacagagatgtca
gaagatgcagctcattccactgctgggtcttccagtgagtcacccctgcaaaaactggag
agaaagaggcaacaagagaccagagagatggaggaggagaggcacctgaaaaaagagaag
gagagagagcgacagctggagcaggagagggagagaactaaggcacaagaacaggagaga
gagaagaaacgcctggaaggagagaaggaaaaggagagaaaacgactggaagaagaggag
aaacggcatcagaaagaggagcgagaaaaagagagaaaacgtcaggaagaggaaaaagaa
aaagagagaaaacaccaggaagatgagaagagacgagaggagaagcggctaaaggaagag
caggataagagacagcagacagccaagaaagcgtgggtggtcgtaactgagccgcaagat
tcaggttcctcgtctgattccgactccaaatcagactcgtcttcacgttcttcacaatcc
tcctcctccagggataaatcctcccctgccaggccactgaagaaggtaaaaccaggacaa
gaagcagaggaagaaaaaaataccaacctgagtaaggaggtggagaaacgacacctttcc
aaaagggaggtgtcggagcctagtgcagccgccgtgacagaggtggaaccagactctgag
agttccatggccgatcagccggcgtccggcgctgagccggagagcagcgagaaccgcctg
gaggagagcacaactcctaaggctttcgctgcccggaagatatccttgaccagcagtaag
acgtctccagccaccgcagatggaggagcaggagaatctgagacggcgacggcagcagga
aggaagaggcgctggggctccagcacagcagtcactgctaagaaaccatccatcagcatc
accaccgactcactgaagtctttgatcccggacattaaagtgaaccaggaggctgtcgtg
gagcttcacccagaggagctgcaaatgtcaggggacgaggagaacctggacaacagccac
agtgaccaggacaaaggactgaagatcagacgcaccgtcacacaggtcgtcccaggtgac
agtcaggaaaatggccagacaaatgaagaggaagaggtggagaaaccggagaaggaaaaa
ccgcgcaggacttccagagacaaaaggaagaacagtctctctgaggaagcagcagaatca
cagacatccgtcaatcttgacgtcgaggcaaagaaagttactcccagcgacagtctggtg
cgtcgctccatcagtcagcagaagtccggcgtgtccatcaccatcgacgaccccgtccgc
gcagctcggcagccctcgccacctcgaggcaaaatctcaaatatcatccatgtgaccaac
ctggtgcgccccttcaccctgggtcagctgaaggagctgctgagccagaccggcaccttg
gtggaagacggcttctggatcgacaagatcaagtctcactgctttgtcacttacaccacc
gcagaggaggcagtctccaccagatctgccatccacggggttaaatggccttcaagcaat
cccaaggtcctcagcgtcgacttctgtgagcaggatgagctggactttcacaaaggcgtc
ctgaaacccgacaaagaggaggaccacgttcccccaccaagcgcccctcagaaccggctg
cccccactgatgcccgagcgggagcggggagtcgctggagtgcgcgacctatgggctgaa
cggcaaagagagatggagcgccgggagcgggcccgtggcgagcgggaatgggaccgggac
aaggtccgggaattcgcaagaccgggggaggacggccgccgatcccgatccagagagaga
gagcgcaggaggaaggagagggcgaagagcaaggacaagaagtcagataagaaagaaaag
ggagatgagcctccggccaaacttctagatgacttgttcctcaagaccaaagcggctcca
tgtatatactggcttcccctgacagaggatcaggcgacacaaaggattctggaccgcaag
gagcggcaaaaggagcgcgagcggcggtgcaagcaacagcaagaggatgaggacaagaag
cgggaagaggagaggaaggagaggctgaaggctcgcgagaaggaaggcggcagcggcggc
gtgacggttagcggcggagtggccgcgagaggagccgacggagaccgagagagggaccgc
ggccgagacagagagccggacaagaggagggacagcggtcagcggcccaatcgaccttca
gccagcactggcagtggcagacggtctcgtagccgtagcaaccctagggatagacgccgc
tga
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