Hippoglossus stenolepis (Pacific halibut): 118103205
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Entry
118103205 CDS
T08308
Name
(RefSeq) collagen alpha-1(XXVIII) chain
KO
K23619
collagen type XXVIII alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hsp01002
]
118103205
Peptidases and inhibitors [BR:
hsp01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
118103205
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
DUF5585
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
118103205
NCBI-ProteinID:
XP_047195000
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Position
24:2303546..2321894
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AA seq
1231 aa
AA seq
DB search
MVPSLLWLLMLGGLQGLWAQDYDEDYEEEVVTIKKKNKLYPSNSIPEKSKTLNDENCGLE
LAFLIDSSESAKDNHAQEKDFALEVMNRLQGLRLQTGRSLTSRAALLQYSSHVIIEQTFK
QWRGIEDFKARLAPIAYIGHGTYTTYAITNLTRIYLEESDVSSIKVAILLFDGVSNPRNP
DIFSAVADAKNQGVRFFTIGITPEANEAANIAQLRLVASSPASRYLHNLQDSGIVEKVIK
EITALADEGCPLALSTCACDKGERGPGGPPGKKGRPGEDGSNGSKGQKGEGGLSGLPGRE
GTEGKSGYKGEQGERGECGTPGIKGDRGPEGNVGPRGNRGPQGLPGPHGDIGPEGVMGKK
GERGLLGPPGIQGETGIGLPGSKGDVGFQGPLGLPGPPGLGELGPPGPQGQQGVQGERGS
LGEGLPGPKGERGLDGPRGPRGQPGAGIKGDKGDFGSPGLPGPRGLPGLGIQGEKGVEGP
RGPLGGRGPQGEGMPGSKGDQGLPGEVGAPGERGSGDPGAKGEPGSTGTSGLPGLPGEDG
APGQKGEPGASGLRGLEGATGIGTQGEKGDQGQRGIRGLTGPPGIAGPSGPKGEPGTQGR
GGPPGPQGRFVVGPKGDLGPNGPAGPVGENGYGLPGPKGDRGDSGPAGPFGPKGDGYPGP
TGPPGLPGLTGEPGQEGVGVPGPKGDIGFRGLPGLPGPPGEGLQGPLGNPGRPGPSGPMG
PHGQGVQGPKGEHGPQGVTGPRGLPGEGFPGAKGDRGSAGERGLKGIGGDMGDPGTPGQT
GRSGIKGEAGLTREDIIRMIKEICGCGIKCKERPMELVFVIDSSESVGPENFEIIKNFVS
ALVDRVTVGRNATRIGLVLYSLEAKLMFNLARYVSKQDIKQAIGTIPYMGEGTNTGTAIR
KATQEAFYSSRAGVSKVAIVITDGQTDKREPVKLDIAVREAHAANIEMFALGIVNTTDPT
QAEFLRELNLIASDPDAEHMFPIDDFNTLPALESKLVSRFCEDENGALIYNRITNGYNGY
GNNGYNGNRNGINGKFANGGYGNRPVTEEGAASGRQTGTGSHSHGGGVDSTRHGIKGSST
AHFHSVVLFQGGGGGGGGRGQHVHTETTNRGTERGDTFNRETIDPSGGDSTRRRGSSSSS
SSSTNVTTSSSGGSVSAPRPALPKETVPLDPRCGLALDQGTCRDYNIRWYYDKQANACAQ
FWYGGCNGNKNRFDTEEECKRTCVIPRSTGG
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggtcccctcactgctctggctcctgatgctggggggacttcagggtctttgggcacag
gactatgatgaagactatgaagaagaggtggtgaccatcaagaaaaagaacaaactatat
ccatccaactccataccagaaaaatccaaaacgctcaatgatgagaactgcggattggag
ttagccttcctgattgacagctcagagagcgccaaggacaaccatgcccaggagaaggac
ttcgccttggaggtgatgaaccgactgcagggcctccggctgcagaccggccgcagcctc
acgtcccgtgcggcgctccttcagtacagcagccatgttatcatagagcagacctttaaa
cagtggagaggaatcgaggacttcaaggcccgactcgctccaattgcgtacatcggtcat
ggcacctacacgacctacgctatcaccaacctcacccgcatctacctggaggagtcggac
gtcagcagcatcaaggtggccatcctgctcttcgacggcgtctcaaaccccaggaatcca
gacatattttcagctgtggctgatgccaagaaccagggcgtgcgtttcttcaccataggc
atcacacccgaagccaatgaggcagccaacatagctcagctgcggctggttgctagctcc
cccgcctcccgctaccttcacaacctgcaggacagcggcatcgtggagaaagtcattaag
gagatcacggcgctggcagatgaagggtgtcccctggccctgagcacgtgtgcgtgcgac
aagggagagaggggccccggcggccctcctgggaagaagggccgtcctggagaagacgga
agtaatggttcaaaaggacagaagggtgagggtggtctcagtggacttccaggtcgtgaa
ggaacagaggggaaatcaggatacaaaggagagcagggggagagaggggagtgtgggaca
cctggaattaaaggagacagaggtcctgaaggaaatgttggcccgagaggaaaccgtggt
cctcagggtttgcctggtccacatggtgatatcggacctgaaggagtgatgggtaaaaaa
ggggaaaggggacttcttgggccacctggaatccaaggggaaactgggatcggccttccg
ggatccaagggtgatgttggtttccaggggccactagggctccccggtcctccagggctc
ggcgagttgggaccaccgggacctcaagggcaacagggagtccaaggtgagagaggatca
ctgggagaaggtctccctggcccaaagggagagcgaggcctggacgggccacgagggccc
agaggacagccgggcgctggaattaaaggagacaagggggattttggatctccaggtctt
ccaggaccccgcggacttccgggcctgggcatacagggtgagaagggggtagaaggacca
agggggccactaggaggcaggggcccacaaggagagggcatgcctggatccaagggagac
caagggttgccaggcgaagttggcgctccaggggagagagggtctggagacccaggagct
aagggtgagccgggatcgacagggacgtcgggtctgcccgggctgccaggagaggacggg
gcccctggacagaaaggggagccaggagcttcaggtctcaggggcctagagggggcaact
gggatcggcactcagggggaaaagggtgaccaaggccaaagaggaataagaggtttgacg
ggtccacctggcatcgctggaccctcaggaccaaagggagaaccaggaacacaaggcagg
gggggtcctcctggtccacaaggacgtttcgttgttggacccaagggggatctcggcccc
aatggtcctgctggtccggttggggaaaatggctatggacttcctggtccgaagggggac
cgtggagattcaggccctgcaggtccatttggtcccaaaggagacggctaccccggcccc
acaggccctcctggtctgcctggactcacaggagaacctggccaagaaggagtgggcgtc
ccgggaccaaagggggatattggtttccgggggctgcctggtttaccaggacctccgggc
gaaggactccaaggacctctgggtaaccctgggcgacctgggccatcggggccaatgggg
ccacatggacaaggagttcaagggccaaagggggaacacgggccccagggcgtgaccggg
ccgagggggctgcctggagagggctttcctggagctaaaggggaccgtggctcggccggg
gagagagggttgaagggaatcggaggtgatatgggagatcctggaaccccggggcaaaca
ggccgatctggtatcaaaggtgaagctggactcaccagagaggacatcatccgaatgatc
aaagagatctgtggatgtgggatcaagtgtaaggagaggcccatggagctggtgttcgtc
atcgacagctcagagagcgtgggcccagagaactttgagatcatcaagaactttgtgagc
gcgctagtcgaccgggtcacggtgggacgcaacgccaccaggatcggcctggtgctgtac
agcctggaggcgaagctgatgttcaacctggctcgctacgtctccaaacaggacatcaag
caggccatcggaaccatcccgtacatgggagagggcacaaacacgggcacggccattcgt
aaggccacacaggaagccttctacagttcgcgtgcgggagtcagcaaagtggccattgtg
attactgacggccagacggacaaacgggagccggtcaagctggatatcgcggttcgagaa
gcacacgccgccaatattgagatgtttgctctggggatagtgaacaccacagacccaaca
caggccgagttcctcagagagctgaacctgatcgcgtctgacccggacgccgagcacatg
ttccccatcgacgacttcaacactctgccagctctggaatccaagctggtcagccggttc
tgtgaggacgagaacggagccctgatatacaacagaataacgaacggctacaacggctat
ggaaacaacggctacaacggcaacaggaatggcattaatgggaagttcgccaacggcggc
tatggaaaccggcctgtgaccgaggagggagcagcgagcggccgacagactggcaccggc
agccacagccatggaggcggagtggacagcacacgacacggcattaaaggatccagcaca
gcacattttcacagtgttgtcttgtttcagggcggaggaggaggaggaggaggaagaggg
cagcatgtgcacactgaaacaacaaacaggggaacagagcgtggggacacatttaaccgt
gaaacaatagatccttccggaggggactccaccaggaggcgaggatcatcttcatcatcg
tcgtcttctacaaacgtaaccacatcatcctcaggtggatctgtatctgccccaaggccg
gcgctccccaaagagaccgtccccttggacccccgctgtggcctggctctggaccagggc
acgtgtcgggattataacatccgctggtactacgacaagcaagccaacgcctgcgcccag
ttctggtacggaggctgcaacggcaacaagaaccgcttcgacacggaggaggagtgcaag
aggacgtgcgtgatccccagatccaccggcggctga
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