Hippoglossus stenolepis (Pacific halibut): 118103222
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Entry
118103222 CDS
T08308
Symbol
samd4a
Name
(RefSeq) protein Smaug homolog 1 isoform X1
KO
K27396
protein Smaug
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118103222 (samd4a)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118103222 (samd4a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
SAM_3
Motif
Other DBs
NCBI-GeneID:
118103222
NCBI-ProteinID:
XP_035005870
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Position
1:3034147..3085715
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AA seq
722 aa
AA seq
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MMFRDQVGVLASWFKGWNECEQTVALLSLLKRVSRTQARFLQLCLEHSLAECTELQVLEG
EANNPGVISQWQSEPKERVISLVLTHLPLLKPGNVEAKGEYMRLLPRILAHTIEHGHHLE
ESRQLLSYALIHPATSLEDRAALALWLNHLEERAAARGDSLERPPPSGPHHHHHHQSTPP
STLTSSGSSSSTNTSSSSNLYSLHHHQRYGSDDRLNGWQSSRDSGLGGGWQQPGCENGHL
LLYPSSSVPATINTVGTSGGGNTILTSGGGSQQHSPLKRSVSLTPPMSGPSSQPLGHVWL
SQEDLRTARGPAPDHAPLSPQSSIASSGSGGSEHLEEAGLGGGSGLHRSSFHDNGSGMRD
VPSWLKSLRLHKYAALFSTMTYDEMMSLTEEQLEAQKVTKGARHKIVISIQKLKERQNLL
RSLEKDVLEGSNLRAPLQELHQMIMTPIKAFSGAEEASLQRLLLSPEGKSAAPGSHLTGG
GSGEAESGTSVIAEGDLPGQFTRVMGKVCTQLLVSRSDEDNISSYLQLIDKCLLHESFTE
TQKKRLLSWKQQVQRLFRSIPRKTLLDIAGYRPQRSRFGQSNSLPTAGCVGGSVSVRRSL
RQFQMPSRSLPGARLGLLGSGGLLGPTPRSSSSTPTGPKQGRQGLWFANPGGSNSMPSRT
HSSVQRTRSLPVHTTPQTMVMFQQADLQLPVTEPDINNRLESLCLSMTEHALGDGADRTS
TI
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttcgtgatcaggtgggcgtcctggccagctggttcaaggggtggaacgagtgc
gagcagacggtggctctgttgtccctgctgaagagggtgagccggacccaggcccgcttc
ctgcagctgtgtctggagcactccctcgccgagtgcaccgaactgcaggtcctggaggga
gaggccaacaacccaggcgtgatcagccagtggcaaagcgagcccaaggagcgtgtcatc
tcgctggtcctcacccatctcccactgctcaaacctggcaatgttgaagctaaaggcgag
tacatgcgcctgctgcctcgcatcctggcccacaccatcgagcatggccaccacctggag
gagtctcgccagctcctgtcctacgccctcatccatcctgccacctccttggaagaccgc
gctgccctggcactctggctcaaccacctggaggaaagggccgctgcccggggagactcc
ctggagaggcctcctccttctgggccgcaccaccaccaccatcaccagtccacaccacca
tccaccctcacctcatcaggatcctcctcctccactaacacctcttcatcgagcaacctg
tactcgctgcatcaccaccaacgctacggctcggacgaccgcctcaatggttggcagagc
tccagggattcggggctgggaggagggtggcagcagccgggctgtgagaatgggcatctg
cttctttacccatcatcctctgtgccggccaccataaacacagttggaaccagtggaggt
ggaaacaccatcctgacgagtggaggtggcagtcagcagcacagtcccctgaagcgctcc
gtgtccctaacacctcccatgagcggccccagcagccagcccctgggccacgtctggctc
tcccaggaggacctgcggaccgccaggggcccggccccggaccacgcacccctctcgccc
cagagcagcatcgcctcctcgggaagtggaggcagtgagcatctggaggaggctggtttg
ggaggaggctcgggtctgcatcgcagctccttccacgacaacggcagtggcatgagggat
gttccctcgtggctgaagagtctccgtctccacaaatacgccgcgctcttttccaccatg
acctacgatgagatgatgtcgctgactgaagagcagctggaggcgcagaaagttacgaaa
ggagccagacacaagattgtcatcagcattcagaagcttaaagagcgacagaacctactg
cgcagcctggaaaaggacgtgttggagggcagcaacctgcgcgccccgctgcaggagctg
caccagatgatcatgacgcctatcaaggctttcagcggcgccgaggaggcctccctgcag
cgcctcctcctgagtcctgagggcaagagcgctgcgcccggctcccacctcacagggggc
ggcagcggcgaggctgagtcggggacaagcgtcatcgcagagggggatttacccggccag
ttcacacgcgtcatgggcaaagtttgtacccagctactggtgtcgaggtcggacgaggac
aacatcagctcctacctacagctcattgacaagtgccttctccacgagtccttcaccgag
acgcagaagaagaggctgttgtcatggaaacaacaggtccagaggctgttccggtccatt
cccaggaaaaccctcctcgacatagcagggtaccgaccgcagagaagccgttttggtcag
tccaactctctccccaccgctggctgtgttgggggcagcgtgtcggtcaggaggagcctt
cgccagttccagatgccctccaggagtttgccgggtgccaggctgggcctgttgggaagc
ggggggctgctgggacccacacctcgcagctccagcagcacgccgaccggccccaagcag
gggagacagggtctgtggtttgccaaccccggaggaagtaacagcatgccgagccggacc
cacagctctgtgcagaggacccgctccctgccggttcacaccacgccacaaaccatggtc
atgttccaacaagctgatcttcagttgcctgtgacagaaccggacatcaacaatcgcctt
gagtctctgtgtctgagtatgacagagcacgccttgggagacggtgctgaccgcacatca
acaatatga
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