Hippoglossus stenolepis (Pacific halibut): 118103516
Help
Entry
118103516 CDS
T08308
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118103516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118103516
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118103516
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118103516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
TRIM_CC
zf-C3HC4_4
zf-C3HC4
FN3_DSCAM-DSCAML_C
PRY
zf-RING_2
Pur_ac_phosph_N
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
118103516
NCBI-ProteinID:
XP_035006441
LinkDB
All DBs
Position
24:10043580..10100793
Genome browser
AA seq
687 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCATNESVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGLPLPLPAPHSGPNSPTEEGSNRLAL
VPISAAMSSPGTPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTGHR
LIEPMPDTHLRGLQCLEHDEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEKLK
QALDSNLSNLIKRNNELESLMGKLIQTCQHVEVNASRQEGKLMEECDLLIDIIQQRRQII
GSKIKEGKTQRLRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSINERVS
MATASTQVLIPEIHLTDTFDTVALDFTREKKLLESLDYLTAPNAPCIREELCTASYDTIT
VHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTKYI
FVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHSQD
RFSSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSSSWVLCRC
NNSWVVRHNSKELAIEPSPHLRRVGVLLDYDAGYVTFYDAVGSQHLHTFHVTFVQPVCPV
FNVWNKCLTILTGLPIPDHLEGVDPNN
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctgacctgtccaatctgtctggagctttttgaagaccca
cttctgctcccctgcgcccacagcctttgcttcggctgcgcccaccgcatcttagtctcc
cactgcgccaccaacgaatctgttcagagcatcggcgcctttcagtgccctacctgtaga
tatgttatttctctgagtcctgagcgtggattagaaggccttaagagaaacgtaaccctg
cagaacattattgatcgagttcagcgggcttcatcctcagccgggctgcctctaccgctg
cccgcgccccacagcgggcccaactctcccaccgaggagggaagcaaccggttggcactg
gtccccatcagcgccgccatgtccagcccaggcacgcctcctgaaccggtccagtgccag
ttctgcgagcaggaccccccgcaggacgccgtcaagacgtgcgtgacgtgcgaggtgtcg
tactgcgaggaatgccttcgagcgacgcaccccaacaagaagccgttcacgggccaccgg
ctcattgagcccatgccggacacccacctcagggggctccagtgtctggagcacgatgag
gagaaggtgaacatgtactgtgtcactgacgatcagctcatctgctcgctgtgcaaactg
gtcggacggcacagggaccaccaggtggcagcactaagtgaccgctatgaaaaactcaag
caagcgctggattccaacctgagtaatttgatcaagaggaacaacgagctggagtcactt
atggggaaactgatccagacatgtcaacatgtcgaggtgaacgcgtcgcgccaggagggc
aagctcatggaggagtgcgacctcctgattgacatcattcagcagaggaggcagatcatt
gggagcaagatcaaggaggggaagacacagaggcttcggaagctcgcccagcagatctca
aactgcaagcagtgcatcgagaggtcctcggcgctgatcacgcaggccgaccagacgctg
aaggagaccgaccacgctcgcttcctgcagactgccaagagcatcaacgagagggtttcc
atggcaactgcgtcaacccaagtgctgatccctgagatacacctaacggacacattcgac
accgtcgcccttgacttcaccagagagaagaagcttctggagagtctggattacctcaca
gctccgaatgctccgtgcatacgagaggagttgtgcacggcttcctacgacaccatcacc
gtccactggacgtctgacgatgaattcacagtggtgtcctatgagctccagtatgccatc
ttcacgggacagtccaacatcgccagtctctgcaactccctggagagctggatgattgtt
cccaacatcaagcagaaccactacacggtgcacggcctgcagagcggcaccaagtacatc
tttgttgtcaaggccattaaccaggcgggaagcagaagcagtgaaccagggactctgaag
accaacagccagcctttcaagctggaccccaagtctgctcacaagaagctgaaggtgtcc
cacgataacctgacggtggagcgggacgaaaccacgtccaagaagggccatagccaggat
cgcttctccagccagagcagctatggcgtggtggggaacgtctatattgacagcgggcgc
cactattgggaggctctaattggagggagcacatggtacgcggtgggcatagcctacaaa
tccgcccccaagcacgagtggatcggcaaaaactcctcctcctgggtgctctgccgctgc
aacaactcctgggtggtgcgccacaacagcaaggagctggccatcgagccctcgccccac
ctgcgacgcgtcggcgtcctgctggactacgacgccggatacgtcaccttctacgacgcc
gtgggctcccagcacctgcacacgtttcacgtcaccttcgtccagcccgtgtgtcccgtg
ttcaacgtgtggaataagtgtctgaccattctcaccggtctacccatccccgaccacctg
gagggagtggatcccaacaactga
DBGET
integrated database retrieval system
