Hippoglossus stenolepis (Pacific halibut): 118103518
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Entry
118103518 CDS
T08308
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
118103518
NCBI-ProteinID:
XP_035006447
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Position
24:complement(7306238..7322479)
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AA seq
738 aa
AA seq
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MVAAAVHFFSLLVPVFQLCLLRPAHGGVYYGHKQPPHQPLPQHNDGYPQQQFLGNEMPLM
PLVPQYGKEMPQLPLQKGKERPLFEGKGQTFPRGAKGPPPPGPGVEGLREGPQGIQGPPG
PTGPPGPQGPAGQPGQGLPGLPGKPGPPGPQGYPGIGKPGMPGLPGKPGVPGLAGPKGDL
GPSGSEGPTGLPGPAGLPGPPGLPGISKTGGQGLPGQPGPLGEPGQKGPSGLYGPPGSKG
DKGIGLPGLPGLKGPGGPPGPRGNVGLPGIGKPGLNGVPGQPGIPGKPGPPGEQGQAGPF
GETGQPGQPGLPGIGKPGQEGFRGQPGLFGGKGEPGPPGLPGGPGLPGYGKPGFPGPKGH
KGHGGLPGPPGLKGDKGHGGVQGVIGPTGLSGMPGPPGPIGPPGSLGFPGQKGEYGAGGT
KGYPGTKGELGPPGLPGQTGRSGEGGQPGQRGFQGPIGPKGEAGMRGLPGVPGAAGLPGP
RGEGGNSGETGHQGPQGIPGITGPGGPIGPPGLLGQKGETGVSGKPGYPGDGKPGSPGHI
GPQGNPGPSGSPGFPGQQGQPGPPGLPGLPSVSPDLGQVLPVTGPYSGQRQGYKKQKNGG
EIGGNGVELPSFTAKLTNPFPLVGSPVIFDKLLHNGNQDYNPQTGTFTCTIPGVYYFAYH
VHCKGSNVWVALMKNNEPVMYTYDEYKKGLLDQASGSAVLPLRQGDTVHLQLPSDQAAGL
YAGQYVHSTFSGYLLYPM
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggtggccgcagccgtccatttcttctctctactcgtcccagtgttccagctgtgtttg
ttacgcccagcccacgggggggtgtattacggacacaagcagccacctcaccagcccctg
ccgcagcacaacgacgggtatccccagcaacagtttttggggaacgagatgccacttatg
ccgttagtgcctcagtatggaaaagagatgcctcagctgcctttgcaaaagggaaaagag
agaccactgtttgaaggcaaaggtcagacattccccagaggggctaaaggcccacctccc
cccggccctggcgtagaaggtctcagagagggaccacaaggaattcaaggcccccctgga
ccgacaggaccaccgggaccacagggccctgccggacaaccaggccagggattgccaggg
ttaccgggaaagccggggcctccaggtcctcaaggttacccaggaataggaaagcccggt
atgccaggattgccaggaaagcccggagtaccagggttggcgggaccaaaaggcgatctc
ggtccaagcggtagcgagggaccaactggacttcccggtcctgctgggcttccgggtccc
cccggactccctgggatttcaaaaacaggaggccaggggcttccaggccagccgggaccg
ctaggggagcctggtcaaaagggtccatctgggctatacggtcccccgggctccaaagga
gacaaaggaatcggtctacctggtttgccaggcctgaaaggacctggtggaccacctggt
ccacgtgggaacgtgggcctccctggtattggtaaacctggcctcaatggcgtacctgga
caaccaggaataccaggaaaaccaggtccacctggagaacaaggccaggcgggaccattt
ggggaaacaggtcaaccgggacagccaggtttgccaggaattggcaaaccaggacaagaa
ggatttagaggtcaaccagggctctttggaggtaaaggagaaccgggcccaccaggctta
ccggggggtccaggactaccgggttacggtaaaccggggtttccaggacccaagggtcac
aagggacatggaggtcttcccggacctccgggccttaaaggcgataaaggtcacggaggt
gttcaaggggtcatcggtcccaccggtctcagcggtatgcccggtcccccaggtccaatc
gggcctcccggtagtcttggcttcccaggacaaaagggcgagtatggtgctggaggaaca
aagggatatcctggaacaaagggtgaattagggcctccgggtcttccaggacagacaggt
agatcgggagagggcggacaaccaggacaaagaggttttcaagggcctatcggccctaaa
ggagaagcgggtatgaggggtttaccaggcgtccccggtgccgccggattaccgggacca
agaggagaggggggaaattcgggagaaacgggccaccagggacctcagggaattccaggg
atcacaggaccagggggaccgatcggacctcccggcctgctggggcaaaaaggcgaaaca
ggggtgtctggtaaacccggctatcccggagacggtaaaccgggatcgcccggtcacatc
ggtcctcaaggtaaccccggtcccagcggctctcctggatttccagggcaacagggacaa
ccgggaccccccggtcttccgggactgccctctgtatctcccgatctcggacaggtcctc
cccgtgaccggcccgtacagcggtcaaagacaaggttacaagaaacagaaaaacggaggc
gagatcggtggaaacggcgtggagttgccctcgttcacagccaagctcacgaatccgttc
cctctcgtgggctctccggtaatctttgataaactcttgcacaacggcaatcaagactac
aatccccaaactggtacttttacctgtaccataccgggggtctactactttgcttaccac
gtccactgcaaaggaagtaacgtgtgggtggcactgatgaagaacaacgagccggtcatg
tacacttacgacgagtacaaaaagggcttgctggatcaggcgtccgggagcgctgtactc
ccgttgcgacaaggagacaccgtgcacttgcagctgccgtcggaccaggccgcgggactt
tacgccggtcaatacgtccactcaacattttccggatacttgttgtacccaatgtaa
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