KEGG   Hippoglossus stenolepis (Pacific halibut): 118103904
Entry
118103904         CDS       T08308                                 
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
  KO
K19719  collagen type II alpha
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510  Focal adhesion
hsp04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    118103904 (col2a1b)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    118103904 (col2a1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:hsp00536]
    118103904 (col2a1b)
Glycosaminoglycan binding proteins [BR:hsp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   118103904 (col2a1b)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 118103904
NCBI-ProteinID: XP_047194801
LinkDB
Position
3:complement(10932331..10972143)
AA seq 1490 aa
MFSFMDSRTVLLLVATQVCLLAVVRCQDDDQEDPISCLQDGQNYNDKDVWKPEPCRICVC
DTGTVLCDEIVCEELKDCSKPEIPFGECCPICAAETSTPIGTPGAKGQKGEPGDITDVVG
PRGPSGPMGPPGEQGDRGSRGDKGDKGNHGPRGRDGEPGTPGNPGPPGPAGPNGPPGLGG
NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG
SMGPRGPTGPSGKPGDDGEAGKSGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYSGLDG
SKGETGAVGSKGESGASGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPSG
PQGAHGPLGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG
ASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGSGEDGRPGPPGPQGARG
QPGVMGFPGPKGASGEAGKSGEKGLAGAGGLRGLPGKDGETGASGPRPRCGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGGAGATGPRGERGFPGERGAAGPQGLQG
PRGLPGTPGTDGPKGAIGPAGGAGAQGPPGLQGMPGERGGAGIPGPKGDRGDIGEKGPEG
ASGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAG
PPGSDGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGSAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPSGTPGEKG
DAGEDGPPGPLGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSAGGAGDRG
PPGPVGPPGLTGPSGEPGREGNAGSDGPPGRDGSPGTKGERGTTGPAGAPGAPGAPGASG
PVGPTGKQGDRGESGAQGPAGPSGPAGARGMPGPQGPRGDKGEVGESGERGQKGHRGFTG
LQGLPGPPGQSGDQGATGPSGPSGQRGPPGPVGPGGKDGSNGMPGPIGPPGPRGRSGESG
PSGPPGNSGPPGLPGPPGPGIDMSAFAGLGQTEKSTDPLRYMRADQASGNLRQHDAEVDA
TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNM
ETGESCVQPKPSGIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAANTAAIQMTF
LRLLSTEAAQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq 4473 nt   +upstreamnt  +downstreamnt
atgttcagctttatggattccaggactgtactgctgcttgtagcaacccaagtctgtcta
ttagccgttgtgagatgtcaggatgacgaccaggaggaccctattagctgtctacaagac
ggacagaactataatgacaaggacgtatggaaaccagagccgtgtcgcatctgtgtgtgc
gacaccggaaccgtcctgtgcgacgaaattgtctgcgaggagctaaaagactgctccaaa
cccgagatcccattcggagagtgttgccccatctgcgcagctgaaacgtccacgcccatc
ggaacccctggagctaaggggcagaaaggcgaacccggagatattaccgatgttgtagga
ccaagaggaccatctggccctatgggcccaccaggagaacaaggagaccgcggatcaaga
ggagacaagggagacaagggaaaccatggtccccgtggcagagatggtgagcctggcacc
cccggaaaccccggcccccctggacccgcaggaccgaacggaccccctggccttggagga
aactttgcagctcagatggccggtggctttgacgagaagtccggcggcgcacagatgggc
gtgatgcaaggaccgatgggccccatgggacccagaggaccacctggccccagtggatca
cctggcccacaaggtttccagggtaacccaggagaggctggagagcccggtcaatctggc
tccatgggcccccgtggccccactggaccttctggaaaacctggagatgatggtgaagct
ggaaaatctggtaaatcaggcgagcgtggaccttctggacctcagggagctcgtggattc
ccaggaactcccggcctgcccggcatcaagggccacaggggttactcaggtcttgatggt
tcaaagggagagaccggagctgtcggctctaagggtgagtctggagcttccggagagaat
ggcgcccctggacctatgggacctcgtggtttgcccggcgagagaggtcgtcctggaccc
agtggagtcgctggagctcgtggaaatgatggcttgcccggccctgctggtcctccaggc
ccagtcggtccttctggagctcctggcttccctggttctcctggttcaaagggagaagct
ggtcctactggtgctcgtggacctgagggtgctcagggacctcgtggagagtcaggtacc
cctggatcatctggaccttctggcgcgtctggaaaccctggtactgatggtatccctgga
tctaaaggatcagctggagctcctggtatcgctggtgctcctggtttcccaggacctcgt
ggacctccggggcctcagggagcaactggacctctcgggcccaaaggaacatctggggac
ccaggtattccaggtttcaagggagaggctggaccaaaaggagaactcggaccctcaggt
cctcagggagcacatggcccactgggagaagagggtaagaggggacccagaggagagccc
ggtgctgctggaccacttggacctcctggagagagaggatcccctggtaaccgtggtttc
cccggtcaagatggtcttgctggtcccaagggagcccctggtgagcgcggacctgccggt
gccagtggtcccaagggtgccaacggtgaccccggccgtcctggagagtctggtctgccc
ggtgccagaggcctgactgggcgacctggtgacgctggtcctcaaggcaaagtcggacct
tccggaggttctggtgaggatggacgtcctggaccccctggcccacagggagcccgcgga
cagcctggtgtcatgggattccccggacccaagggagcgtctggtgaggctggcaagtct
ggagagaagggactggctggagctggaggtctgagaggtctgcctggcaaagatggagaa
actggcgcttctggaccccggccccgctgtggccccgctggagagagaggagagcaagga
cagcccggaccctccggcttccagggtctgcctggacctccaggcccccctggagaggga
ggcaagcccggagaccagggagttcctggagaggctggaggtgccggtgctactggaccc
agaggtgagcgtggtttccccggagagagaggagctgctggtcctcagggtcttcaggga
cccagaggtctgcctggaactcccggaactgatggacccaagggagccattggtcctgct
ggtggtgctggagctcagggcccccccggcctgcagggtatgcccggagagagaggtggt
gccggcattcccggacccaaaggagacagaggtgacattggagagaaaggacctgaaggt
gcttccggcaaagacggtggaagaggtctcactggtcccatcggccctcctggtcctggt
ggtcccaacggagagaagggtgaatcaggtcctgctggtccctctggagctccaggtacc
cgcggtgctcctggtgacaggggtgagactggacctcctgggcctgctggatttgctgga
cccccgggctctgatggtcaacctggaaccaagggagagcagggagagtccggacagaag
ggagacgctggtgcccccggaccccaaggaccatctggtgcccccggacctgctggtccc
acaggtgtgtttggacctaaaggtgctcgtggtgctcagggacctcctggtgccactggt
ttccctggagctgctggccgtgttggtcctcctggtcccaacggtaaccctggatctgct
ggtcctgctgggcctcctggcaaagacggacccaagggtgtgaggggagacggtggacct
ccaggccgacagggtgacgctgggctccgtggcccctctggaactcccggagagaaggga
gatgctggagaggacggtcctcctggtcccctgggtccttcaggtcctcagggtctgggt
ggtcagcgcggtattgtcggtcttccaggacagcgtggtgagagaggcttccccggtctg
cccggaccctctggtgagcccggaaagcagggaagtgctggtggcgccggagaccgtgga
ccccctggacctgtcggaccacctggactcaccggaccttcaggagagcccggcagagag
ggcaacgctggatctgatggacctcctggtagagacggttctcctggaaccaagggtgag
cgtggtaccactggccctgctggcgctcctggtgctccaggcgctcccggtgcctccggc
cctgttggtcccaccggcaaacagggagacagaggagagtctggtgcacaaggacctgct
ggaccttcaggacccgctggagccagaggaatgcccggaccccaaggaccccgtggtgac
aagggtgaggttggggagtctggtgagagaggacagaagggacacagaggcttcactggt
ctgcagggtctgcccggacctccgggtcaatctggagatcagggagctactggacctagt
ggaccttctggacagagaggaccacctggccctgttggccctggtggaaaggacggttca
aacggcatgccaggacccatcgggccccccggacctcgtggtcgctctggagagtctggt
ccctctggtcctcccggaaactctggaccccccggtcttcctggtccccccggccccggt
atcgacatgtctgccttcgctggcctgggccaaaccgagaagtccaccgatcccctcagg
tacatgagggccgaccaggcctctggaaacctccgtcagcacgatgccgaggtcgacgcc
accctcaagtctctcaacaaccagattgagaacatccgcagccccgagggatccaggaag
aaccctgcccgcacctgcagagacctgaagctgtgccaccctgactggaagagcggagag
tactggattgatcccaaccagggctgcactattgatgcaatcaaggttttctgcaacatg
gagacaggagagtcctgcgtccagcccaaaccttctggcatccctcgtaagaactggtgg
tccagcaagagcaaagaccgcaaacacgtctggttcggagaaacaatgaatggaggattc
cacttcagctatggtgacgacagcctggcggccaacacagctgccattcagatgaccttc
ctgagactgctctccaccgaggcggctcagaacctcacctaccactgtaagaacagcgtg
gcctatatggacgcctcgacagggaacctgaagaaggccgtgctgctgcagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacctacagcgtgatggaggacgga
tgcacgaaacacacgggccagtggggcaagacggtgatcgagtacagatcgcagaagacc
tctcgtctccccattgtggacattgctcccatggatattggtggagcggaccaggagttt
ggcgtcgacgtcggggcggtctgcttcttgtaa

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