Hippoglossus stenolepis (Pacific halibut): 118104434
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Entry
118104434 CDS
T08308
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118104434
Spliceosome [BR:
hsp03041
]
Common components
Common spliceosomal components
General mRNP proteins
118104434
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
118104434
NCBI-ProteinID:
XP_035008181
LinkDB
All DBs
Position
3:552515..562726
Genome browser
AA seq
503 aa
AA seq
DB search
MSDDLDIEAMLEAPYRKEDAKTSSPDGQDEHNKRKKCSRTRDKKRSKSRDRKKSRSRERK
RSRSKERRRSRSRERRRSRSRERGGRYRDHQKHRRKSRSKSPFKKDKSPIRQPIDNLTPE
ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVETNSVP
LAIGLTGQRLLGVPIIVQASQAEKNRAAAAAAAAAAAANNLQKGSSGPMRLYVGSLHFNI
TEEMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFADAECAKKALEQLNGFELAGRPM
KVGHVTERADGSSASSFLDSDELERTGIDLGTTGRLQLMARLAEGSGLQIPPAAQQALQM
SGAIAIGAMAAVSAAMNPGLNMNSPVTLPSQPLATHCFQLSNMFTSHSDDAPGWDVDIQH
DVIEECNKHGGVVHIYVDINSTEGNVYVKCPSIPAAMAAVNALHGRYFAGKMITAAYVPL
PTYHNLFPESVAATQLLAPPPRR
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgacctggacatcgaggcgatgctggaggctccgtacaggaaggaggacgcc
aagacctcgagtccggatggacaggatgaacacaacaagaggaagaagtgcagtcgcacc
cgcgacaagaagcgcagcaagagtcgagacaggaagaagagccgcagtcgagaacgcaaa
cgtagccgcagcaaagagaggcgaagaagccgcagtcgagagcgccgccgcagtcgcagc
agggagagaggggggcgctacagagaccatcagaaacatcggcggaagtcgaggagtaag
agtcccttcaagaaggacaagagtcccatcaggcagcccatcgataacctgactccagag
gagcgagatgctcggacagtgttctgtatgcagctggctgcaagaatcagacctcgtgac
ctggaggacttcttctctgctgtgggcaaggtgcgggacgtgaggatgatctcggacagg
aactcccgcaggtcaaagggcatcgcctacatcgagttcgtggaaacaaactcagttcct
ctggccatcggactgacggggcaaaggctgctgggagttcccatcatcgtacaggcctca
caggcggagaagaaccgagcagcagcagctgcagcagctgcagcagcggcagccaacaac
ctacagaaaggttcctcaggaccgatgagactttacgtcggttcactgcatttcaacatc
acagaggagatgctgagaggaatctttgaaccatttggacgaattgagagcatccagctg
atgatggacagtgagacgggtcgatctaaaggttacggcttcatcacttttgcagatgca
gaatgtgctaaaaaagctttggagcagctgaacggcttcgagctggcaggtcgacccatg
aaggtcggtcatgtgactgagcgggccgacggctcttcagcctcgtctttcctcgacagt
gacgagctcgaacgcaccggcatcgacctgggaaccacggggaggctgcagctgatggcc
cgactcgcagagggttcaggtcttcagattcctcctgctgctcaacaggctcttcagatg
agtggagctatagcgattggagccatggctgctgtgtcagctgccatgaatccaggtctg
aacatgaactctcctgtgactcttccctctcagccgcttgcgacgcactgtttccaactg
tccaacatgttcaccagccacagtgacgacgctcctggctgggacgttgatattcagcat
gatgtcatcgaggagtgtaacaaacatggaggagtcgttcacatctacgtggacataaac
tctacagagggaaacgtttatgtgaagtgtccatcaatcccggctgccatggctgccgtt
aacgccctccacggaagatactttgctggtaagatgatcactgcggcgtacgtccccttg
ccaacttaccacaacctcttcccagagtccgtcgctgccacacagctgctggccccgccg
ccgcgacggtga
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