Hippoglossus stenolepis (Pacific halibut): 118104623
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Entry
118104623 CDS
T08308
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a isoform X1
KO
K14966
host cell factor 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03083
Polycomb repressive complex
hsp04980
Cobalamin transport and metabolism
hsp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118104623 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
118104623 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118104623 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118104623 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118104623 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
hsp03029
]
118104623 (hcfc1a)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118104623 (hcfc1a)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
118104623 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
118104623 (hcfc1a)
MLL-HCF complex
118104623 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
118104623 (hcfc1a)
Mitochondrial biogenesis [BR:
hsp03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
118104623 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
118104623
NCBI-ProteinID:
XP_035007516
LinkDB
All DBs
Position
3:complement(24065717..24079442)
Genome browser
AA seq
1740 aa
AA seq
DB search
MSAPGSAVSGTTAAVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
AGSSVVGWDIPITYGVLPPPRESHTAVVYTEKTSRKSRLIIYGGMSGCRLGDLWTLDIDT
LTWNKPSVSGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAAASPVMSATPSQ
PVNSPRSPALAVAAPSAQSLPQTAILKVAAQQSATGTSVVTVRPSQPGKSPITLTSLPPG
VRMVVPAQTTQGSVRKQFATHLVPIGSSPQMSGMAALAAAAAATQKIPPSSAGTLLNVPA
GATILKTVAVSPGTTTVKMASPLMVSNPATRMLKTAAAQVGTATASSPTTTRPIITVHKS
GAVTVAQQAQVVTTVVGGVTKTITLVKSPLTMGSGGTLISNLGKMMSVVQTKPVQTAISG
QGSTNPLAQLIQTKGPLPAGTILKLVTSADGKPTTIITTSQAGGTGHKPTILNISGVSPT
TKQGTTIIKTIPMSAIMSQSGATGVTSSAGMKTPITILTTKVMTTGTPGKIITAVPKLAT
AAGQQGLTQVVLKGAPGQPGTILRTVPMSTVGGVRLVTPVTVSAVKPTVTTLVVKGTTGV
TTLGTVTGTVSSSLAGGTVDSSKASLVTPITTLGTISTLSSQVISPAAITVSAAQTSLTS
ASTLASSTITVQNQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSTEAGAAGEGS
GTVTLVCSNPPCETHETGTTNTATTSSATIGAGQVCSNPPCETHETGTTNTATTSSATIG
ARQVCSNPPCETHETGTTNTATTASSNMSALRMCSNPPCETHETGTTNTATTASANMGGS
QQVCSNPPCETHVTGTTNTATQASSNMNAGQTGTVQRVCSNPPCETHETGTTNTPSTATS
SMGGDQTNTATGTVQRVCSNPPCETHETGTTNTATTATCSMETGEGTAAQQTEEGTEGTS
STEVASTTAATGVATAGVAAATAAAATAAATTTTTTQGRAITTVTQSTPAPGPSVPSISS
ITEGVSTAASSTEEPMQTNEAVSAEAAPAEEGATAMETQAEVNTGEAAATDLNLPSELMS
EGQGATLMVTGLSDEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMHEGDSAGE
SQQPTNIPIMLTQQELAALVQQQQQLQEAQAAAQQATVDASLPTEGLAPADSLNDPSVES
NGHNEMAAAVTSAVASLLPRTTAETLAPSSTFAPSVSVASPAKLQAAAALAEVANGIEGE
KQAPQPTPVKPVVKKENQWFDVGIVKVTNMVVTHFYVPADDSHGDDDSGVMPDYSQMKKM
ELQPGTAYKFRVAGINACGRGAFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPS
VTSGKIIEYSVYLAIQSNQTAEAKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTT
KPAIIFRIAARNEKGYGPATQVRWLQESGKDAASAKPAPKRPGTSPDTKATGPKKARTDQ
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccctggctccgcggtgtctgggaccacggcggcggttctgcagccgcggtgg
aagcgggtcctcggatggtccggtccagttccccggcccagacatggacacagagctgtg
gctataaaggagcttatggttgtctttggtggtgggaacgaagggatcgtggatgaattg
catgtatacaacaccgcaacaaaccagtggtttatcccagcagtccgtggtgatatcccc
cctggttgtgctgcgtatggttttgtctgtgatggcacaagattgctggtgtttggtgga
atggtggagtatggaaagtacagcaacgatctctatgaactacaggccagcagatgggaa
tggaagaaattgaaagcaaaaaacccaaagaatgggccccctccttgtcctcgtcttggc
cacagtttttccctggttggcaacaagtgctacctgtttggtggattggccaatgacagc
gaggacccaaaaaacaacattcccagatacctaaacgatctgtacacactggagcttcgt
gctggttccagtgtggttggatgggatattccaatcacctacggagttttgcctcctccc
cgtgagagccacactgctgtggtttacacagaaaagacgagcaggaaatctcgcctcata
atctatggagggatgagtggatgtcgtcttggagatctgtggacactcgatattgatacc
ctgacatggaacaaaccatcagtaagcggcacagcgccacttcccagaagtcttcactct
gccaccaccatcacaaacaagatgtatgtttttggaggatgggttcctctggtgatggat
gatgtcaaagtggccacacatgagaaagagtggaagtgcacaaacactctagcctgccta
aatcttgattccatgtgttgggagacagtgttgatggatactctggaagacaatatcccc
agagcccgtgcgggccactgtgctgtggccatcaattccagactttatgtttggagtggc
cgtgatggttatcgtaaagcttggaacaaccaagtctgctgtaaagacctctggtacctg
gaaacagagcggccacatgcccctgccagggtgcagttagtccgtgccaacacaaactcg
ctggaggttagctggggtgcagtctccactgctgacacctacttattgcagctacagaag
tatgacatcccagcaactccagctgcagcctcacctgtcatgagcgcaaccccttctcag
cctgtgaactctccaaggagccctgccctggctgtagcagcaccctctgctcagagcctg
ccacagacagctattttgaaagttgcagcccagcaatctgcaacaggcacatctgttgtc
acagtccgccccagccagcctgggaaatcccctatcactttgacatctcttcctccaggt
gtccgaatggtagtgccagcccagaccacccaaggatcggtacgcaaacaatttgcaacg
catcttgtcccaattggcagtagtcctcagatgagtggcatggcagctttagctgcagca
gccgcagcaacacagaagatccctccctcctctgcaggcaccttactcaatgttcctgcg
ggtgccaccattctcaaaacagtagccgtttcccctggcacaaccacagtgaaaatggcc
tctcccctcatggtcagtaacccggccacccggatgctgaagactgctgcagctcaggtg
ggcacagcaactgcgtcctctcccaccaccacccgacccatcatcactgtgcacaagtct
ggtgcagtcacagtagcccagcaggcccaggtggtaaccactgttgtgggaggagtcact
aagaccatcaccctggtcaagagtcccctcaccatgggcagcggtggcactctgatctcc
aaccttggcaagatgatgtctgtggtacaaaccaagccagtgcagacagctatctctggc
cagggttcaactaaccctctcgcacagctcatacagacaaagggtcccctcccagcaggc
accatcctgaagcttgtgacctctgctgacggcaagcccacaaccatcatcaccacttcc
caggctggaggcacaggacacaagcccactatcctcaacattagcggcgtctctcccacc
actaagcagggcaccaccatcattaagactatccccatgtcggccatcatgagccagtcc
ggagccacaggtgtgacaagcagtgcaggcatgaaaacgcctatcacaattctgaccacg
aaggtgatgaccactggaactcctggtaaaatcatcactgccgtgcccaaacttgctact
gcagccggccagcagggactgacacaggtggttttgaagggggcccccggacaaccagga
accattttgcgtactgtgcccatgagcacagtgggtggtgttcggcttgtaacacctgtg
acagtgtctgctgtgaagcccactgtcacaactctggttgtgaaggggactactggtgtc
accactcttggaacagtcactggcaccgtctccagcagcctggcaggaggcacggtggac
agttccaaagcctctctagtcacccccatcaccacgctaggaaccatctcgaccctgtcc
agccaggtcatcagcccagctgccataactgtgtcagctgctcagaccagcctgacctct
gcctccactctggcctcctctaccatcacagtgcagaaccagccaacccaggtgacttta
atcacaactccgagtggagtagaagctcaaccagtgcaggatctaccggtttccatcctg
gcttcaccaacctccgagcagcccagttccactgaggctggagcagctggagagggatct
gggaccgtcaccctggtctgctccaacccaccctgtgaaacccacgagacaggaaccacc
aacacagccaccacctcctcggccacaattggagctggacaggtctgctccaacccacct
tgtgagacccatgaaaccggaaccaccaacacagccaccacctcctctgctacgattgga
gccaggcaggtctgttctaacccaccatgcgagacccatgaaacgggaaccaccaacaca
gccacaactgcatcctcaaacatgtctgcgctccgtatgtgctccaacccaccatgcgag
acccacgaaactgggacaactaacacagctaccacagcatccgctaacatgggtgggtcc
cagcaggtgtgctccaatccaccctgtgagacccacgtgacaggaaccaccaacacagcc
actcaggcatcgtctaacatgaacgcaggccagacaggcaccgtgcagagggtgtgctcc
aacccaccctgcgaaacccatgagacagggaccaccaacaccccatctacagcaacctcc
agtatgggaggcgaccagaccaacacagcaacagggacggtccagagggtgtgctccaac
ccaccctgtgaaacacacgagaccgggaccaccaacacagccaccactgccacctgcagc
atggagacaggcgaaggcacagcagcccagcagacagaggaaggaactgaaggtaccagc
agcacagaagtggcctctaccactgcagcaacaggcgtagccactgccggcgtagccgcc
gccaccgctgccgcagccaccgcagccgccaccaccaccaccaccacccagggcagggcc
atcactactgtcactcagtctacaccagccccagggccctctgtaccatcaatttcatca
atcacagagggtgtgagtactgccgccagctctacagaggaaccaatgcaaactaatgag
gcagtatcagcagaagctgcaccagcagaggagggagctactgctatggagacacaagca
gaagtaaatacaggagaagcagcagcgacagatttgaacctgccctcagagctgatgtct
gagggtcagggagctacacttatggtgacagggctgtcggacgaggagctggctgtgacc
gcagcagcagaggccgctgctcaggcagcagccactgaagaagcccaggccctcgctatc
caggctgtcctccaggcagctcagcaagctgtaatgcatgaaggcgattcggctggagag
agccagcagcccacaaacatccccatcatgctgacccagcaggagctcgcagctctggta
caacagcagcagcagctgcaggaggctcaggctgcagcccagcaggccaccgttgatgca
agcttacctactgaaggcctcgcccctgccgacagcctcaatgacccctctgtcgagagc
aacggacacaacgagatggctgccgcagtcaccagtgctgtagcatctctgctgccacgt
actactgctgagacacttgctccatcaagcacctttgcaccctctgtgtcggtggcaagt
ccagccaagctgcaagcagcagctgctctagcagaagtcgccaatggcatagagggagag
aagcaagctcctcagccaaccccagtgaaaccagttgtaaagaaagagaatcagtggttt
gatgttggaatcgtaaaagtgacaaatatggttgtcacccacttctatgtgccagcagat
gattctcatggagatgatgactctggtgtcatgccagactacagccagatgaagaaaatg
gagttgcagcctggaacagcttataagttccgtgttgctggaatcaacgcttgcggtcgc
ggagcgttctcagagatttcagctttcaagacttgcttaccaggcttcccaggggcccct
tgcgccatcaaaatcagcaagagcccagatggtgcccacctgacctgggagccaccctct
gtgacatcagggaagatcatcgaatactccgtgtatcttgccatccagagcaaccagaca
gctgaagccaaggcctccaccccagcccagctagccttcatgcgggtgtactgtggaccc
aacccgtcgtgcttggtgcagtcgtccagcctctccaacgcccacatcgactacaccacc
aagcctgccatcatcttccgcatcgccgcccgcaacgagaagggctatggtcctgccacg
caagttcgatggctgcaagaatctggcaaagatgctgcctcagcaaaaccggcccccaaa
agaccaggcacctctcctgatactaaggctactggtccaaagaaagcaaggacggaccag
tga
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integrated database retrieval system