KEGG   Hippoglossus stenolepis (Pacific halibut): 118104624
Entry
118104624         CDS       T08308                                 
Symbol
si:dkey-13a21.4
Name
(RefSeq) ras-related protein rab7
  KO
K07897  Ras-related protein Rab-7A
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04137  Mitophagy - animal
hsp04140  Autophagy - animal
hsp04144  Endocytosis
hsp04145  Phagosome
hsp04148  Efferocytosis
hsp05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    118104624 (si:dkey-13a21.4)
   04145 Phagosome
    118104624 (si:dkey-13a21.4)
   04140 Autophagy - animal
    118104624 (si:dkey-13a21.4)
   04137 Mitophagy - animal
    118104624 (si:dkey-13a21.4)
   04148 Efferocytosis
    118104624 (si:dkey-13a21.4)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    118104624 (si:dkey-13a21.4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsp04131]
    118104624 (si:dkey-13a21.4)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hsp04147]
    118104624 (si:dkey-13a21.4)
   04031 GTP-binding proteins [BR:hsp04031]
    118104624 (si:dkey-13a21.4)
Membrane trafficking [BR:hsp04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab GTPases
    118104624 (si:dkey-13a21.4)
Exosome [BR:hsp04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   118104624 (si:dkey-13a21.4)
  Exosomal proteins of other body fluids (saliva and urine)
   118104624 (si:dkey-13a21.4)
  Exosomal proteins of colorectal cancer cells
   118104624 (si:dkey-13a21.4)
  Exosomal proteins of bladder cancer cells
   118104624 (si:dkey-13a21.4)
GTP-binding proteins [BR:hsp04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab7/9 [OT]
    118104624 (si:dkey-13a21.4)
SSDB
Motif
Pfam: Ras Roc Arf MMR_HSR1 RsgA_GTPase Gtr1_RagA GTP_EFTU PduV-EutP Septin AAA_24 AAA_16 AAA_5 AAA_22 IIGP
Other DBs
NCBI-GeneID: 118104624
NCBI-ProteinID: XP_035007519
LinkDB
Position
3:24061817..24065032
AA seq 204 aa
MSEGKAGVTVKVVLIGNSGVGKSSFTNRYVNHRFTNMYRATIGTDFLSKTVNIDGATVTL
QLWDTAGTERFQSLGTPLYRGAHCCMLVFDVTSKASFSALELWRKEFLFQAEPQDPADFP
FIVMGNKSDLGDREVSCRMAKQWCEEIGANYFEGSAKEDVGVEKPFLRAAQIGLQQYKKH
TLENTGHFQITCKQPTETRNTCEC
NT seq 615 nt   +upstreamnt  +downstreamnt
atgagcgaagggaaagcgggtgtaactgtgaaagtggtcctcataggaaactctggggtg
ggtaaatcctccttcacgaacagatatgtgaatcaccgcttcaccaacatgtaccgggcc
acaataggaactgacttcctctctaagacggtgaacatagatggagccacagtcactctg
cagctgtgggacacagccggaacagagaggttccagtctctgggtacacctctgtacaga
ggagctcactgctgcatgctggtcttcgatgtcacgtccaaagccagtttctctgccctg
gagctttggaggaaggagttcctgttccaggccgagccccaggacccagctgacttccct
tttattgttatgggcaacaagagtgacctgggtgaccgggaggtgtcttgcaggatggct
aagcagtggtgtgaagaaatcggagcaaactactttgaagggagcgccaaagaagatgtg
ggtgtagagaagccgtttttgagagcggctcagatcggactacaacagtacaaaaaacac
acattggaaaatacaggacatttccagataacctgcaaacagccgacagaaactcgcaac
acctgtgagtgctga

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