Hippoglossus stenolepis (Pacific halibut): 118104723
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Entry
118104723 CDS
T08308
Name
(RefSeq) transcription factor SOX-13 isoform X4
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118104723
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118104723
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
118104723
NCBI-ProteinID:
XP_035007695
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All DBs
Position
3:26756971..26802683
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AA seq
634 aa
AA seq
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MVDPSPPALHLLSCGNVSMAGVGVKVEQEEFGEGGGVITIVEPPKTSPSRDWSGSHPLEA
RQLTPPMSRSPSEGSPGKELTHRQSPMGLKEVRKHDRPEVQSNFKEVMPTIEKLLNADWK
EKLLDKSTVRAGQLKGTPESLAEKELQLLMMINQLSGLREQLLGAHSEQRNMAALLLEKQ
QQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFHTSAQSLQVTSD
PQMTLPLQPIPCKPAMDYPMQLLPNPHSTQVKRSSSFRQEASQPLNLTSKPKGMELGKTP
SPQSLELGSLALQGAYRLRDLHREVSHSPPRSALSFLGDGDVVTQAIHDAQLLLKSNGSG
GRERERDRDGGEKMEYKESAHSERISHSERGDVRHGRPSTEDHLSSDSEVGALSVSVPGS
YAEARPPPSSGHIKRPMNAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQ
PYYEEQARLSRQHLERYPDYKYKPRPKRTCIVEGRRLRVGEYKAMMKSRRQEQRATYTHS
QTEPQQIHYSHSDGQYAGSAGSVSVATMPFHPALLEHYLPQVPPAPRRVEAHVAPTSLPR
ERERERKREQPLYSEGEESDGGERSEGELVLLTD
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggttgatcccagccctcctgcgctgcacctcctctcttgcgggaatgtcagcatggca
ggtgttggtgtcaaagtagaacaggaagagtttggtgaaggaggcggagtcattaccatc
gtggaacccccaaaaacatctccctcacgcgattggtcaggaagtcatccactggaggcc
cgccaactaaccccaccgatgtcccgctccccttcggagggctcgccaggtaaggagctg
actcacaggcagagccccatgggactcaaggaggtcaggaagcatgatcgaccagaagtg
caatccaacttcaaggaagtaatgcccaccattgagaagctgctgaatgctgactggaag
gagaagcttctggataaaagcacagtgcgggcaggacagctgaaaggtacccccgagtct
ctggcagagaaggagctccagttgttgatgatgatcaaccagctgagtggtctgagggag
cagctgctgggggcgcactctgagcagaggaacatggccgccctgctgctggagaagcag
cagcagcagatggagctggctcgacagcagcaggaacagattgccaaacaacaacagcag
ctgatccagcagcagcacaagatcaacctgctccagcagcagatccagcaggtgaacatg
ccctacgtgatgatcccggctttccacaccagcgcccagtccctccaggtcacctctgac
ccccagatgaccctgccattgcaaccaatcccctgcaagccagccatggactatcctatg
cagctgctaccgaaccctcactccacccaagtgaagaggagcagttccttccgacaggag
gcgagtcaaccattgaacctgacctccaagccaaaggggatggagctagggaagacgccc
agtccccagagcctggagctgggatccctggcactgcagggggcttacagactcagggat
ctccacagagaagtgtcccacagtccaccgcgatctgccctcagtttccttggagacggc
gacgtggtcacacaggccatccacgatgcccagctgctcctgaagagcaacggcagcggc
gggcgagaaagagagagagacagggacggcggggaaaagatggagtataaagagtctgcc
cacagcgagagaatttctcactccgagcggggtgacgtcagacatggccggcccagcacc
gaggaccacctcagcagtgactctgaggtaggtgctctgtccgtttctgtcccaggcagc
tacgctgaggcccggccccctccctcctccggccacattaagagacccatgaatgccttc
atggtgtgggccaaggacgagcgcaggaggatcctgcaggccttccctgacatgcacaac
tcctccatcagcaagatcctgggttccaggtggaagtccatgtccaaccaagagaagcag
ccttactatgaagagcaggcgaggctgagccggcagcacctggagcgctacccagactac
aagtacaaaccccggcccaaacggacctgcattgtggaggggcggaggctgagggtgggc
gagtacaaggccatgatgaagagccgtcgtcaggaacagagagcgacctacacgcacagt
caaacagagccccagcagatccactactcccacagcgatggacagtacgctggcagcgct
ggctcggtctccgtggcaaccatgccttttcaccccgcgttactggagcattacctgcca
caggtcccgcctgccccacgtcgagtggaagcccacgtcgcgcccacttccctgcccagg
gagagagagagggaacgaaagagggagcagcctctgtacagcgaaggagaggaaagtgac
gggggagaaaggagtgagggagaactggtgctcctgacagactga
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