Hippoglossus stenolepis (Pacific halibut): 118104739
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Entry
118104739 CDS
T08308
Name
(RefSeq) cartilage intermediate layer protein 1
KO
K24436
cartilage intermediate layer protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
118104739
Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
118104739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CILP_C
CILP_8th
CILP
CILP_5th
Mucin2_WxxW
Ig_3
I-set
Ig_2
TSP_1
CarbopepD_reg_2
CarboxypepD_reg
Ig_5
ig
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
118104739
NCBI-ProteinID:
XP_035007725
LinkDB
All DBs
Position
1:12229391..12236374
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AA seq
1163 aa
AA seq
DB search
MSLKPLLLIWGITAASVVTAQGSWRKDNRESGPAVYQSEENYEWTTWFNVDHPGGRGDYE
QLEAIRFYYRARVCETPRAIEARTTEWIPARDTGETVHADPTVGFWCLNEEQGPERNCSN
YAVRFLCPKVISVNIQGTWGPWSDWSPCPAACGEVKVQLRSRNCQSHSMPCSGPRVEEKV
CNGPECPKTDCFLQCAVGKVNAECDACMCEEHILLGSVRGAGGLIAEGATILRNGKLLTL
TDHNGHFRIPGICPDGNTTLSVSLQGHVTHNIVVPISSERTSVLSIQLKRIEKLHVLSKP
DSKARRQGQTAAFCCKVAGTPQPDKYQWFHNDSLLEKHTGSTLVLKDLHLEQTGEYYCRA
SGPSGAIKTKPASLKVLGRNEHSCNPKPQSHHIRLPHDCYQNSTDSLYYDVGKCPSNTCA
GKLDNGIRCKDKVAYCCGVENMEKRQITCQGYQLPTMVVTECSCQKCVETKSIVHGRAIA
ADNGEAMRFGHIFMNGVRIGRTGYKGTFSIQVPPDTERLVLTFVDNMQKFVNSTKVLPFN
TKGGAVYHEIQLLRKKAPVTISSIETNTLELGEVEGQEAMVQIQIPPNSFYKENGEAFTG
NVNASITFLDPRDVSTAAAAQSDLNFVGSEGDTLPLRTYGMFSVDFRGEENNEPLNAGEV
KVFLDSAQVKMSEHLNTMKLWSLNPDTGLWEEEGSLQVEKKRRGKREERTFLIGNMEIRE
RRLFNLDVPENRRCYVKVRAFRSDRFMTSEQVEGVVVSLINMEPTAGYSSNPRAWGRFDS
VITGSNGACLPAFCDEQKADAYSAYVMANLGGEELEAVPSAPKLNPNLIGVPQPYLGKLN
YKRTDHEDPRVKKTAFSINVAKPSPNTAEEGNGPVYQFEKLKDCEEAPFSAPHFRFSRVE
GDRYDYNTVPFNEDDPMSWTEDYLSWWPKPMEYRACYVKVKITSPHEINVRSRNMGGTHP
KTVGQLYGLRDTRSIRDMDQNTVSAVCLEFKCSGMLYDQERVDRTLVKVIPQGSCKRDLV
NTMLQEYLVNHLPLAVNNDTNEFTMLAPLDPLGHNYGIYTVTDQDPRTAKEIALGRCFDG
TSDGTSRVMKSNEGVALSFTCGDREVTHQSAFQSLQSSQGQTVTSVVRGEGRQNRRRQRA
NAPRSSRRRSTRNPTGKRAEAKN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgaagcctcttctgctcatctggggaatcactgcagcctctgttgttactgct
caaggatcatggagaaaggacaacagagagtctgggcctgctgtctaccagtctgaggaa
aactacgagtggaccacatggttcaacgtggatcaccccggaggtcgtggagactacgag
cagctggaggccattcgcttctattaccgtgcacgagtgtgtgagacaccacgggcaatt
gaggccagaaccactgaatggatcccagcccgcgacactggggagacggtccatgcagat
ccgacagtgggcttctggtgcctcaatgaggagcaaggtcccgaacgcaactgctcgaac
tatgcagtccgcttcctctgtcctaaagttatcagtgtgaacattcagggtacctggggc
ccttggtcagactggagcccatgccccgccgcctgtggtgaagtgaaggtccaactacgc
tccagaaactgccagtctcactctatgccttgcagtggccctagagtagaagagaaagta
tgcaatggacctgagtgcccaaagacagattgtttcctgcaatgtgcggtggggaaggtg
aatgctgagtgtgacgcatgcatgtgtgaagagcacatcctgttgggttcagtacgtggg
gctgggggtctcatcgctgaaggagctacgatccttcgcaatggaaagctcctcacccta
actgaccacaacggacatttccgcatccccggtatctgccctgatggcaacaccacgctg
tcggtcagcctgcagggtcacgtcacccataacattgttgtgccaatcagctctgaacgc
acttctgtcctcagtatccagctgaaaagaatagagaaacttcatgtgttgagcaaaccc
gacagcaaggccaggaggcagggacaaactgctgccttctgctgcaaagtggcgggaaca
ccacagccagacaagtaccaatggtttcataacgacagtctcctggagaagcacactggg
agcaccttggtcctaaaggatctgcatcttgagcagactggggagtactactgcagagca
agtggtccatctggtgctatcaagaccaaaccagcttcactcaaggtcctaggtcgaaat
gagcattcatgtaaccccaagcctcaatcccaccacatccgtcttccacatgactgctac
caaaacagcacagactcattatattacgatgtgggcaagtgcccttcaaatacatgtgct
ggaaagctggacaatggcatcaggtgcaaagacaaagtggcttactgctgtggggtggaa
aatatggagaagaggcagattacatgccaaggttaccaactacccaccatggtggtgact
gagtgtagctgccagaaatgtgtggaaaccaagtctattgtgcacggtcgggccattgcg
gcagataatggtgaggcaatgaggtttggccatatctttatgaatggagtcagaatcggc
cgcacgggctacaaaggtaccttctccatccaggtccctccagacacagagaggctagtc
ctgacttttgtggacaacatgcagaaatttgtcaacagcacaaaggtacttccatttaac
accaaaggaggggctgtttaccatgagatccaacttcttagaaagaaagcacctgtcacc
atcagctcaatagaaaccaacactttggagcttggggaggtggagggccaagaggcaatg
gttcagatccagattccacccaattccttttacaaggagaatggagaagccttcacgggt
aatgtcaacgctagtataacatttctcgacccaagagatgtctccacagctgctgcagct
caaagtgatctaaattttgtaggaagtgaaggagataccttacctctaagaacctatggt
atgttctcagttgacttcaggggtgaggaaaacaatgagcccctgaatgcaggtgaggtg
aaagttttccttgattctgctcaggtgaagatgtctgagcacctaaacaccatgaagttg
tggtcattgaaccctgataccggcctgtgggaggaggagggaagtctgcaggtggagaag
aaaagaagaggcaaaagggaggagagaacatttttgattggtaacatggagatcagagag
agacggctgtttaacctggatgtcccagagaaccgcaggtgttatgtgaaagtgagggcc
ttccgcagtgatcgcttcatgactagtgagcaggtggagggagttgtggtgagtctcata
aacatggagccgacagctggctactcctctaacccacgtgcctggggacgattcgatagt
gtgatcactggctcgaacggtgcctgtcttcctgccttctgtgatgaacaaaaagctgat
gcatactctgcctatgtcatggccaatcttggaggggaggagctggaggctgtcccttct
gctcccaaactcaatcccaacctcattggagtgccccaaccttacctgggtaaactgaac
tacaagcggaccgaccacgaagacccacgagttaagaaaacagctttcagcatcaacgtg
gcaaaaccaagtcccaacacagccgaggaaggcaacggaccagtgtaccaatttgagaaa
ttgaaagactgtgaggaagcccctttcagtgcaccacacttccgtttctcaagagtggaa
ggagaccgctatgattacaacactgtgccattcaatgaagacgacccaatgagctggact
gaggactacctgagctggtggcccaagcccatggaataccgggcctgctatgttaaggtt
aaaatcaccagtccacatgagatcaatgtgcggtcccgcaacatgggtggcacccatccc
aagacagtgggccagctgtatggcctccgcgacactcgcagcatccgtgacatggaccag
aacactgtatcagctgtgtgcttggagttcaaatgcagtgggatgctgtatgatcaggaa
cgtgtcgatcgaaccctggtgaaagtgatcccacaaggaagctgtaagagagaccttgtc
aacacaatgcttcaggagtatctggtcaaccacctgcccctggccgtcaacaatgacacc
aatgagttcactatgctggcgcctcttgaccctctgggccataactatggaatttataca
gtgacagaccaggatccccgcacagctaaagagatcgcacttggacgctgctttgatggc
acttctgatggcacgtctcgcgtcatgaagagcaatgagggtgtggcgctgtcgttcacc
tgtggagatcgtgaggtgacacaccagagtgctttccagtccttgcagagctctcagggt
cagacagtgacaagtgtggtgagaggcgaaggcaggcagaaccggcgccggcagagagcc
aacgcacctcgcagcagtcgtagacgtagcaccagaaaccccacaggaaaacgtgcagag
gccaaaaactaa
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