Hippoglossus stenolepis (Pacific halibut): 118104791
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Entry
118104791 CDS
T08308
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a isoform X1
KO
K06757
neurofascin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118104791 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118104791 (nfasca)
Cell adhesion molecules [BR:
hsp04515
]
Immunoglobulin superfamily
L1 family
118104791 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Bravo_FIGEY
V-set
C2-set_2
Ig_DSCAM-DSCAML_C
Ig_VEGFR-1-like_5th
BiPBP_C
DUF3792
Motif
Other DBs
NCBI-GeneID:
118104791
NCBI-ProteinID:
XP_035007815
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All DBs
Position
3:30432410..30554706
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AA seq
1388 aa
AA seq
DB search
MLGQGRHTALALVSLLLLSLREATPIEVPQDPKIQQDLKQPPTIVKQSVKDYIVDPRDNI
IIECEAKGNPVPTFSWRRNGKFFNIGKDPRVTMRKRSGTLEIGFRSGGRPEDYEGEYQCF
ATNDFGVALSNKILLRVSKAPLWPKEVLEPVVVTEGSPLVLTCNPPPGLPPPFTFWMSSA
MNPISQDKRVSTGLNGDLYFSNVVAQDAHTDYSCNARFLFTHTIQQKNPFTLKVLTKEPY
NETSYNATDPYGGRKVSESTPTFLSPSGSESSKIVQRDEQLLLECIAAGLPTPTVKWFKK
GGDLPGNKVKFQNFNKTLKIISVSEEDAGEYVCMANSHLGSIRHSIFVQVKAAPYWLDKP
TDLVLAPDENGRLVCRANGNPKPNIQWLINGQPIDTSPANPSRQVLGDTILFRSVQMGSS
AVYQCNASNQHGYLLSNAFVSVLDMPPRMLGPKNQLIKVIENNRTFLDCPFFGSPLPELR
WFKNGQGSGLDGGQYRVYINGTLEIKRARTEDEGTYTCVANSILGSAENQVRLEVKAQTR
IVRFPEHQSAIRGSTARFNCKVKSDPSLPVTVTWTKDDKALYLGWRLRKDDESLTIPNVN
EGDEGTYTCTVKSEIDQDSASARLTVLEEASLNPSLSSALPPDRPDPPIDLDLSDPAARS
VRLTWIPGNDHRSVITEFLVQFEEDRWEPGRWQNLSTYPGDLNSVILQLAPFVNYQFRVI
AINSVGQSQPSRPSPRYKTSGAAPDVIPRGLRGWGSKKDNMEITWEPLLDLERNGPNLQY
NVWWRRKDVGEEWSNVTTEGSKHIIHNTETYVPYEIKVQARNEFGQGPESNVVIGYSGED
KPTDAPTDFRVSKVDSTKANIHWKSVDPNSVQGEFKEYKLYYWRESSIVPGLMVSKENKT
KGIYSTTSEPSGILSDLVPYSKYKMFIVVANRHFEGPPSNTVEFSTKEGVPDAPRFFRIN
RRSFDTIYLEWDKPLEPNGILTGYQLKYQTVNGSRVGRQQLETFLPNMTDFTLRLPDRST
RFKFLLSALTQVGAGEVFAEESPHFTNEDNFTDTTGLVNLTDTSVASTFTPTPPPLASLP
PTTMAPTTIAPTTISTSTTTTPKATTSPSTTTTPTTATTATEATTTTTPPVLVTTRRTDQ
NVLVVPGQKIWDLTVEPNSNYANVSWRHNFPAGSSEFVLEFTLDSNNTERTVRVTQQPPI
RVADLIAGAAYRLRVYSHEFNSISSNYFNFKTQAAYIDQVDIATQGWFIGLMCAIALIIL
ILLIVCFIKRSRGGKYPGGCCVTGFAKYLVRDKKDLPLDSVDHKDQDGSFDYHSDEDNKP
LQGSQTSLDGNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVKKDKDETEGNESSEATSP
VNAIYSLA
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgttggggcagggcaggcacacggccctggctctcgtgtctttactgcttctatcattg
cgtgaggcaacacccatcgaagtcccacaagacccaaagatccagcaagacctgaagcaa
ccccccactatagtcaaacagtcagtgaaggactacattgtcgacccaagagataacatc
atcatcgagtgtgaggccaagggcaacccagtgccaacgttttcatggcgaaggaatggg
aagttcttcaacattgggaaagatcccagggtgactatgcgaaaacgctcaggaacactg
gagattggtttccgtagcgggggacgaccagaggactacgaaggagagtaccaatgtttt
gctaccaatgactttggagtagctctgtccaacaaaatcctgctgcgggtctcaaaggct
cctctgtggcccaaggaggtgttggagccagtggtggtgactgaaggctccccactggtt
ctaacctgtaaccccccaccaggactacctcctccctttaccttctggatgagcagcgct
atgaacccaatatcacaagataagagagtgtctacaggtttgaatggagacctgtacttc
tccaatgttgttgctcaagatgctcacacagactacagctgcaatgctcgcttcctcttc
acacacaccatccagcagaagaaccccttcacactcaaagttctcaccaaggagccatat
aatgaaacatcttacaatgccactgacccctatggtggccgtaaagtatccgagtccacg
ccgaccttcctctcaccatcaggcagtgagagctccaaaattgtgcaacgagatgagcaa
ctgctactggagtgtatcgctgctggactaccaactcctaccgtcaagtggttcaagaag
ggcggggacctgccaggaaacaaagtgaagtttcagaatttcaacaagaccctgaagatt
atcagtgtgtcagaggaggatgctggggagtatgtgtgtatggccaacagtcatttaggc
agcatacgccacagcatctttgtccaggttaaagcggctccttactggctggacaaacct
acggacctggtgctagccccggatgagaacggccgcctggtgtgtcgggccaacgggaac
cctaaacctaacattcagtggctgatcaatggacaacctatagacacctctcctgctaac
ccgagcagacaggtgcttggtgacaccatcctcttccgctcagtgcaaatgggaagcagt
gctgtttatcagtgcaacgcctccaaccagcatgggtacctgttgtccaatgccttcgtc
agtgttctcgacatgcctccgaggatgctgggccctaaaaaccaattgattaaagtcatt
gagaacaaccgcacctttttggattgtccattctttggttcccctctgcctgaactacgc
tggtttaagaatggacagggcagtgggctggatggtggtcagtaccgtgtttacatcaac
ggcaccctggagatcaaaagggctcgaacagaggacgagggcacgtacacatgtgttgcc
aacagcatcctgggctcagccgagaaccaggtccgcctggaggtcaaagcgcaaactcgt
atagtcagattccctgagcaccagtcagccatcaggggctccacagctcgtttcaactgt
aaagtgaagtcggatcccagcctgcctgtcactgtgacctggaccaaggatgacaaggct
ctctatctaggatggaggctgaggaaggatgatgagtcactgaccatccccaatgtgaat
gagggtgatgagggaacatacacctgcactgttaaatctgagattgaccaggactccgca
tctgcccgcctgactgtgttagaggaagcctccctcaacccctcactctctagtgccttg
cctccagaccgcccagaccctcccatagatctagatctgtctgacccagcagcccgcagt
gttcgcctcacctggatccctggaaatgatcacaggagtgtcatcacagaattcttggtc
cagtttgaggaggaccgctgggagccaggcaggtggcagaacctgtccacttaccctggg
gacctcaactctgtcatcctgcagctcgccccatttgtcaactaccagttcagggtcatc
gccattaattcagttggccagagtcagcccagccgtccctcaccaagatacaagaccagt
ggagcggctccagatgtaattcccagaggtcttagaggatggggctccaagaaggacaac
atggagatcacttgggagccactgcttgatctggagagaaatggtccaaatctacaatac
aacgtgtggtggagacggaaggatgtgggggaagagtggagtaatgtgaccacagagggg
tccaaacatatcatccacaacacagaaacctatgtgccttatgagatcaaagtccaggcc
agaaatgagtttgggcaaggacctgagtctaatgtggtcattggatactctggagaggac
aagcccacagatgctcccactgactttagggtatcaaaggtcgacagcaccaaagcaaac
atccactggaagtctgtggacccaaactctgtccagggagagttcaaagagtacaagctg
tattactggcgtgagtccagtatagtcccaggtttgatggtcagtaaggagaataagacc
aaagggatctacagcaccacgtccgagccatctggcatcctcagtgacctggtgccctac
tctaaatataagatgtttatagttgtggccaacagacactttgaaggccctcccagcaac
actgtggagttctccaccaaggagggagtccccgatgctccaagattcttcaggatcaac
aggaggagttttgacactatctacttggaatgggataaacctttggagccaaacggcatt
ctaactggataccaactcaaatatcaaacagtcaatggctccagggtgggtcgacaacag
ctggagacttttcttccaaatatgacagacttcacccttcgcctgccagatcgatctacc
cgctttaagttcttactgtcagcgctcacacaggtgggagcaggagaggtcttcgctgag
gagtccccacacttcaccaatgaggataattttactgatactacaggtctagtcaacctt
acagacacctctgtggcttcaactttcactcccactcctcctcctctcgcttctcttcct
cctactaccatggctcctacaaccatcgctcctacaaccattagcacctcaactactacc
actcctaaagctacaacttctccttctactacaacaactcctactaccgccaccactgca
actgaggcaacaactaccaccacacctcctgtgctagtcaccaccaggcgtaccgatcag
aatgtgttggtggtccctgggcaaaagatctgggatctgacggtggagcctaacagtaac
tacgctaacgtcagctggagacacaacttcccggccggcagcagcgagtttgtgctagag
ttcacactggacagcaacaacacggagagaacagtacgagtgactcaacagccccccatt
agagtggcggatctgatcgcaggtgccgcgtaccgtctgagggtttactcccatgaattc
aacagcatcagcagcaattatttcaactttaagacccaagcagcttacatagaccaggta
gacatcgccactcagggctggttcatcggcttgatgtgtgccattgccctcatcatactg
atcctcctcatcgtctgcttcatcaaaaggagtcgtggtggcaaatatccaggtggctgc
tgtgtgactggtttcgcaaaatatctcgtgcgtgacaaaaaagatctccccttagactca
gtggaccataaagaccaggatggatccttcgattaccacagcgatgaggacaacaagcct
ctgcagggcagccagacttcgctggatggcaatgtgaaggaaagcgacgacagcctcgtg
gactatggtgaaggtggcgatggtcagttcaacgaggatggctcttttattggccagtac
acagtgaagaaggacaaggatgagacagagggcaacgagagctccgaggccacttcacct
gtcaatgccatctactcactggcatag
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