KEGG   Hippoglossus stenolepis (Pacific halibut): 118104840
Entry
118104840         CDS       T08308                                 
Symbol
rrp9
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2 isoform X1
  KO
K14793  ribosomal RNA-processing protein 9
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:hsp03009]
    118104840 (rrp9)
Ribosome biogenesis [BR:hsp03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    118104840 (rrp9)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML EIF3I WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IP5PC_F WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st PEP5_VPS11_N Beta-prop_NWD2_C Beta-prop_RIG_1st WDR54 WD40_like
Other DBs
NCBI-GeneID: 118104840
NCBI-ProteinID: XP_035007973
LinkDB
Position
3:14163755..14169359
AA seq 485 aa
MSSFFIKSKENPKSARKGKYVAAPKRKGDGDPGAKSKLREKKTNARYNEEISSDSENEGP
IGSRKRPVVEEKDYGETPQEKKLRLAKLYLEQLKEADENKAEAEDFETDLVAGRLEEEVL
EQKGKLQRFIAKDLVQPEASEIRLLRGHKLPVTCLVISPDDKCIFSAAKDCSIIKWDVES
GKKLHTIPGGRKGTGDRHVGHTAHILCMAISSDGKYLATGDMNNLIMIWEAETCKHLYKF
TGHKGPVSGLSFRKGSHDLYSASHDRSVKVWNVDENAYVETLFGHQDTITGLDSLSRERC
VTTGGRDRTVRVWKIAEESQLVFHGHEGSIDCIQLINEEHMITGADDGSVSLWSVNKKKP
LSTVKKAHGCHGDAGLQQPHWVSSVAALHNSDTAASGACGCSHNSHVQLWKCGQNYRGLE
RLFTVPVSGFVNSLKFSSSGQFLVAGVGQEHRLGRWWRLKEAKNGIYVIPLKRKPPNPEE
AKTTE
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgtcgtctttttttataaagtcgaaagaaaaccccaaatcagcaagaaaggggaaatat
gtagcggcgccgaaacgaaaaggagatggagatcccggggctaagagcaaactacgagag
aagaaaaccaacgccagatacaacgaggagatttccagcgactctgaaaatgaaggtccc
atcgggtccaggaagagaccggtggtcgaggagaaggactacggggagacgccacaggag
aagaagctgagattagccaaactgtacctggaacagctgaaggaagcagatgaaaataaa
gccgaagcagaagactttgagacggatctggtcgcaggaagactcgaagaagaagtgctt
gaacagaaaggaaaacttcagcgatttattgccaaagatctcgtacaaccagaagcttca
gagatccgtttgttaagaggacacaaacttccagttacttgtctggtcatctcccccgat
gacaagtgcatcttttctgctgccaaagactgctccatcattaagtgggatgtggagagc
gggaagaaactgcacacgatacccggtggaaggaagggcacaggggatcggcatgttgga
cacacagcccacatcctatgcatggccatatcatcagatggaaaatacttggcgactgga
gacatgaacaacctgatcatgatctgggaggcagagacctgtaaacatctttataaattc
acaggacacaaaggccctgtgtcgggtctgtctttcaggaagggatctcatgatctgtac
agcgcatctcatgaccgctcagtcaaggtctggaacgtggatgagaatgcatatgtggag
actctcttcgggcatcaggatactatcacaggactggacagtttgagccgtgagcgctgt
gtgaccacaggaggacgggaccgcaccgtgagggtgtggaagatagctgaggagtcccag
ctggttttccatggccacgagggttcaatcgactgcatccagctcataaatgaagagcac
atgatcacaggagctgatgatggctctgtgtctctttggagtgtcaacaagaagaagcct
ctcagcactgtgaagaaggcgcacggttgccatggtgacgcagggctgcagcagcctcat
tgggtctcttcagtggcggcgcttcacaactcggatactgccgcctcaggtgcctgtggc
tgttcacacaactcacatgtgcagctctggaagtgtggccagaattaccgtgggctggag
cgtctattcactgtaccagtgtctggttttgtcaacagtctgaagttttcgagctctggt
cagtttttggtggcaggagttggacaggagcacaggttgggccgatggtggagactaaaa
gaggccaagaatgggatctatgttattcctctgaaaaggaagcctccaaatccagaggaa
gccaaaacaactgaatag

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