Hippoglossus stenolepis (Pacific halibut): 118105329
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Entry
118105329 CDS
T08308
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118105329 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118105329 (smarcc2)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118105329 (smarcc2)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118105329 (smarcc2)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118105329 (smarcc2)
PBAF complex
118105329 (smarcc2)
GBAF(ncBAF) complex
118105329 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
118105329
NCBI-ProteinID:
XP_035008848
LinkDB
All DBs
Position
3:complement(16691788..16703587)
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AA seq
1076 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIYLSADIEPKLLGKLKDIIKRHQGSVTEDKASSSHVVVP
IPTSLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEVEAALEDPPSPEKPRKVHAK
WILDLDQYNEWMTEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPSSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLSKDLDEASPVPASEEGNAAKTN
NTKKDSDSTPVKGGTDMDEQEDESMETTGKEEEEGSPGVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTTQTPATQPMMSFPDKVKEKPADLQNFGLRTDMYSKKSGSVKSKSTASSMREWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSPSTLGPLAFQPV
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGERPGMMDTYTPIHTYNIDTTCDPTSLSTPDENTDEN
KNDTQSSEEKREPKDSKDGAIEEEEKQAENGKKEEERGREPEGEREADKTESDMGDGEKE
KEGKEGTEEGQREGESEIERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIK
SLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMR
ARQQHFQQIQHQQHSQAGGPHSTQPASGVQPQAVAASQQAPSTPAPPPAASPAPPTSSAP
APESQPPQSAHTSPPRPPSQAPASHSSSSTTPVLHEPTTPLSGETLHPAAPVPPPQ
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgacacc
gtctctcagtttgataatgtccgcgtctggctggggaagaattacaaaaagtacatccag
gccgagccccccaccaacaagtcgctgtccagcctggtggtccagctgctccagttccag
gaggaggtgtttgggcgacatgtcagcaaccctccactcaccaaactgcctatgaagtgt
ttcctggacttcaagtcagggggtgctctctgccacattctggctgctgcctacaagttc
aagagtgaccaaggatggcgcaggtttgacttccagaatccgtcaaggatggaccgaaat
gtggagatgttcatgaccattgagaagtcgttggtgcagaacaactgcctgactcgacct
gtcatctacctgagtgcggacatagaaccaaaactgctcgggaaactgaaagacatcatc
aaaagacatcagggctcggtgactgaggacaaggcctccagctcccatgttgttgtgcct
attcctaccagtctggaggaagaggagtgggtgcgtcccgtgatgaagagagataaacaa
gtgctgcttcactggggatattttcctgacagttacgacacctggatcccagccagtgag
gtcgaggctgcgttggaggatcctccgagcccagagaaacccaggaaggtccatgccaag
tggattttggacctggaccagtataacgagtggatgactgaagaggactatgaagtgggc
gagggctgccccaagaggaagaggatctctgccaagaccctgacggatgaggtgaccaca
cccgacgagcggcgggacaagaagcccagcagtgccaagaagaggaagcgttcgccgtcg
ccctcccccacccctccacctcaggagagcaagaagaagaacactaagaaaggaccaaca
accccgtacaccaagtctaaacgtggccagagggaggaagaacaggaagacttgagtaag
gacttagatgaagcatcacctgttccagcatctgaagagggaaacgcagctaagacaaat
aacactaagaaagattctgattcaactcctgtcaagggaggaacggatatggacgagcaa
gaggatgagtccatggaaacaacagggaaggaagaggaggaaggctccccgggtgtcaag
ggagaaccggtaaaaggctctgaccttcatgaggacaacgtgactgagcaaacccaccac
atcatcatcccgagctacgctgcctggtttgattacaacagtgttcacgccatcgagcgc
agagccctgccagagtttttcaatggaaagaacaaatccaaaacccctgagatttatctg
gcgtacaggaacttcatgatcgacacctatcgactgaatcctcaggagtacctcacctcc
accgcctgccgcaggaacttggcaggagatgtttgtgcaatcatgagagttcacgccttc
ctggagcaatggggtctgatcaactaccaggtggactcagagagccggcccacacccatg
ggtcctccacccacctctcacttccatgtcctggcagacacaccatccagtctggttccc
ctgcagcctaagaccacacagactcctgctacccagccaatgatgtcattcccagataaa
gtgaaagaaaaaccagcagatctgcaaaactttgggctacggactgacatgtacagcaag
aagagtggctctgtaaagagcaagagtacagcaagctccatgagggagtggacagagcaa
gaaacactactactacttgagggtttggaaatgtacaaggacgactggaacaaagtgtca
gaacacgtgggcagccgtacacaggatgagtgtatcctgcactttctgcggctgccaatt
gaagacccctacttggaggacagcccctcgactctgggaccactcgcctttcagccggta
cctttcagccaggcaggaaaccccgtcatgagcacagtggccttcctcgcctctgtcgtt
gacccacgtgtggcctcggctgcagctaaatctgctctggaggagttctctcgtatgaaa
gaggaagttcctgcagctctggtcgaagctcacgtgcgacgagtggaggaggcagcgaga
gtcagtggccgccaggaccccctgtacggcctggaaggaagtgggattgcaggaactggc
ctggaggagggagaaagaccgggtatgatggacacatacacacccattcacacgtacaac
atagatacaacttgtgacccgacttctctctcgaccccagatgaaaacactgatgaaaac
aagaacgacacccaatcaagtgaagagaagagagagcccaaggacagcaaagatggtgcg
attgaagaagaggaaaaacaggcagaaaatgggaagaaggaagaagagagaggaagagaa
cctgaaggagagagggaggccgacaaaacagaatcagatatgggtgacggagagaaggag
aaagagggaaaagagggaacagaggaaggacaaagagaaggagagagtgagatagagagg
aaggccaaggtagagcgtgatgttggagaggggaacctggccactgctgctgcatctgct
ctcgctgcagctgctgtcaaagccaagcacctggctgcagtggaagagaggaagatcaaa
tctctcgtggctttgttggtggaaactcagatgaagaagctggagataaaactgagacac
tttgaagaactggaaaccatcatggacagagagagggaggctctggagtaccagcggcag
cagctcctcgccgaccgtcagtctttccacatggagcagttgaaatacgctgagatgaga
gctcgccagcagcacttccagcagattcagcaccagcagcacagccaggccgggggccct
cattccactcagccggcctcaggcgtgcagcctcaggccgtggcagcaagtcagcaagct
cccagcacaccagcaccgccgccggccgccagccccgcacctccaacgtcttctgcccca
gctccagagtcccaaccgcctcagagtgctcacacctcgcccccacgtcccccaagccag
gccccggcttcccactccagctccagcactacacctgtacttcatgagcccaccaccccc
ctctccggggaaacactccaccctgcagctccagtccctccaccacagtga
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