Hippoglossus stenolepis (Pacific halibut): 118105406
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Entry
118105406 CDS
T08308
Name
(RefSeq) laminin subunit beta-3
KO
K06244
laminin, beta 3
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04382
Cornified envelope formation
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118105406
04518 Integrin signaling
118105406
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118105406
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118105406
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
KASH_CCD
CCDC39
LAMB1
CCDC171
CCDC18_1st
DUF1664
Laminin_I
FAM81B
CCDC18_2nd
MG280
FapA
CEP131_C
FH2
Golgin_A5
FKBP15
CEP135_TSGA10_CC
GlnD_UR_UTase
SlyX
Sec3_CC
DUF7310
Prominin
ODF2_C
SKA2
DUF5798
PUMA_CC
EzrA
Rod_CreS
ApoLp-III
Fez1
Filament
ATG16
CLIP1
NPV_P10
Motif
Other DBs
NCBI-GeneID:
118105406
NCBI-ProteinID:
XP_035009027
LinkDB
All DBs
Position
3:30282270..30299863
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AA seq
1167 aa
AA seq
DB search
MMILLLLAALTAVSQAQTDCSRGACYPPSNNLLLGRAHQLHASSTCGLTGSEVYCSPYPL
GRMKCCPCDSRNPNGPLAHTVQDVLSTSGPERWWQSKKDVSPVTLQLDLDNLFQLDNLFL
NFKGPRPSALVIERTLDNGRTWEPSLYLATDCQRTFPGIPTSTPLKLDDTYCYTLPSTEA
TPYQDHIIEFSPLRQYAYVPAPKSQKIEGVTGLTGLRVKLTELGDVPRHPGRALSRFYAL
KEMRVMGRCMCHGHANRCLPEAYNNPLSNTIQVNPQCDCQHNTAGMNCERCADLYNDLPW
RPAEEGDTHACKRCECNNHAQRCHFDQAVYDASWQSSGGVCEGCLHHTTGPKCDQCAPGY
QPNPRSRMDRPDACIRCICNPEGTVNGGQCDDITGSCQCKVNVEGPRCDRCKRGHHGLSD
SNPLGCTKCSCSPDGSMSDVCDALTGQCPCHPHFHGLTCEVCSKGYWKPVLSGRCKPCAC
DPTRSYSDTCDQVTGQCQCRPGFGGRTCTECPENSYGDPLIGCQPCGCDTDGTLPEVCDK
QTGACLCQLGVTGTRCDSCTRGHCDSFPACETCPSCFFTLDAQMQNLSLTLERLSSGFPS
RPGGDTDIGKFGPRIRTLEASLKLIQDSILLPPNIVKQIDGALSRLDKLRDQVDEVNDDL
PPATRPPGLESELNKLQALLDGLSVLYKAKKSATENTISPNNAGAFTAIKNAYDESTDAA
KKVDASGNTVKESADKREETKDLQGNVQPDNTRDLNNLNQSMATQPDLTPVAKQVCGSVR
TEPCTPLLCEGGDLCPPRGTPMCVKGKKCVGALPLSKRAKADSKDVKEQLDKLSVNVTEA
TEKLQETQDTTNQVRQSAEKLSNKMKRTRDELEDDLKETRDAVKELKDFLSDPSSNLTHI
KEVSDWILNAKLPIEQADLKRKLEELKNLAAILPDSTAVLKDAEPLLARARKLLQEAQDA
RDTALGVNADVDGLLEGLGSVDSSLTGLEEKLQSSIDSIDNLNNTLTEAKDKLPPAEKDL
DDVSTQIKSIKPQLDEIKDILQNGSQQAGLAQATADKAEDEAAAANEDLLSLEDELDKLK
DQVAASGSGGNAGDVGDRLAKLQQDAGTLANTTADMMNSLEGKADSLRSLQDQIVQNSTM
LEGLDVKLKELFQQLRKKAIDLSTCQG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatgatacttttacttctagctgccttaactgcagtatcacaggcccagactgattgc
tctcggggggcttgttacccacccagcaataacctgctcttgggtagggctcaccagctc
catgcctcctccacctgtggcctcaccggctccgaggtctactgcagcccatacccactg
gggaggatgaagtgttgtccatgtgactccaggaacccaaatgggccgctggcccacact
gtccaggatgtcctgtccacctctggaccagagagatggtggcagtccaagaaagacgtg
agtccagtcactctccagttggaccttgacaacctgttccagcttgacaacttgtttctc
aacttcaagggccctcgtcccagtgccttggttatagagaggacactagacaacggcagg
acatgggagcccagcctctacctggctacagattgtcaaaggacttttcctggcatcccc
acgtcaacacctcttaagctggatgatacatactgctacacactgccctctactgaagca
accccctaccaagaccacataattgagttcagtcctctgcgtcagtatgcttatgtccca
gctcccaagagccaaaaaattgaaggtgtcactgggttaacggggctgagagtgaagctg
acagagctgggtgatgtgccacgtcacccaggcagagctctcagtaggttttatgccctg
aaggagatgagggtgatgggcagatgtatgtgccatggacacgccaaccgatgtctgcca
gaggcctataacaacccactgtccaataccatacaagtgaatcctcagtgtgactgccaa
cataacacagcaggcatgaactgtgagcgttgtgctgatctctacaacgatctaccctgg
agacctgcagaggagggagacactcatgcctgcaaacgctgtgagtgcaacaaccatgcc
cagcgctgtcattttgaccaggcagtgtacgatgctagttggcagagtagtggaggtgtg
tgtgagggttgtctgcaccacaccacagggccaaagtgcgaccagtgtgccccaggctac
caacccaacccccgcagccgaatggaccgtcctgacgcctgcattcgctgtatctgcaat
cctgaggggacagtgaacgggggccagtgtgacgacatcacaggctcgtgtcagtgtaaa
gtgaatgtcgaaggtccccgctgtgaccgctgtaaaagaggccaccatggtctgagcgac
tccaaccctctgggctgcaccaagtgttcctgttctcctgacgggtccatgtcagacgtc
tgtgacgctctgactggccagtgtccctgtcatccccacttccatggcctgacctgtgaa
gtctgttcaaaaggctactggaaaccagtcctgtccggacgctgtaaaccctgtgcctgt
gaccccaccaggtcatacagtgatacctgtgaccaggtgactggtcagtgccaatgcaga
ccagggtttggaggccgaacatgtacagagtgcccagagaactcttacggagacccacta
ataggctgccagccatgtgggtgtgatacagatggaacccttccagaggtttgtgataag
cagacaggagcctgtttatgtcagctgggtgtcaccgggacacgctgtgactcctgcact
cgaggacactgtgattctttccctgcctgcgagacgtgtccctcctgcttcttcacactg
gatgcacagatgcagaacctcagcttaactctggagagactctcctccggcttcccctca
cgtcctggaggtgacactgatattggaaagttcgggcctcgcatccggaccctggaggcc
agtctgaaactgatccaagactccatcctccttcctccaaatattgtcaaacagatcgat
ggtgctctgtcccgactggacaagctgagggaccaggtggacgaggttaatgatgacctc
ccacctgctacaagacctcctggtctggagtcagagctgaacaagctgcaggctctgctg
gatggcctcagtgtgttgtacaaagccaagaaaagtgccacagagaacaccatcagtccc
aacaatgcaggagcatttactgccatcaagaacgcctatgatgagtcgacagatgcagcc
aagaaggtagatgccagcggaaacacggtgaaggagtcagctgacaagagagaagaaact
aaagatcttcagggcaacgtgcaaccagacaacaccagagatctgaacaatctgaaccag
agcatggctacccaacctgacctcactcctgttgccaaacaggtatgcggcagtgttcgc
actgagccctgcacccctcttctatgtgagggtggagacttgtgtccaccgcggggaacc
ccaatgtgtgtaaaggggaaaaagtgtgtgggcgccctgccgctgagtaagagggcaaag
gctgattctaaggatgtgaaggagcaactggacaagctctctgtgaatgtcacggaggct
acagagaagcttcaggaaacacaggacacaaccaatcaggtgagacagtcagcagaaaag
ctgtccaataagatgaagcggaccagagacgagctagaagatgacttaaaggagacacgt
gatgctgtgaaggaactcaaagacttcctgtcagacccgtcctccaacctgacccacatc
aaggaggtgagtgactggatcctgaatgccaagctgcctatcgaacaggctgatctgaag
agaaagctggaggagctgaagaatctggcagccattcttccagacagcacagctgtgttg
aaggacgcagagcccctgctggcgagagccaggaaactgttgcaggaggcccaggatgcc
agggacacagctctgggagtaaatgcggatgtggacgggctgctggaaggcttgggttcg
gtggacagctctctcactggcctggaggaaaaactgcagagcagcatagattccatagac
aacctgaacaataccctgactgaggccaaggacaagctgcccccagcagagaaggatctg
gatgatgtatccacgcagataaagtcaataaaacctcaactggacgagatcaaagacatt
ctgcagaatgggagccagcaggccgggttagcacaggcaactgcagacaaagcggaggat
gaagcagctgctgcaaatgaggacctgttgtccttagaggacgagcttgacaaacttaaa
gaccaggttgctgccagtgggtctggtggaaatgccggggatgtgggagatcgactggca
aagctacagcaggacgctggaactctggccaacaccactgctgacatgatgaattctcta
gaaggtaaggcagattccctgaggagccttcaggatcagattgttcagaactcaacaatg
cttgaaggacttgatgtcaagctaaaagaactgtttcaacaacttcgaaagaaagccatt
gacctgagcacctgccagggctga
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