Hippoglossus stenolepis (Pacific halibut): 118105771
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Entry
118105771 CDS
T08308
Symbol
ncam1b
Name
(RefSeq) neural cell adhesion molecule 1b isoform X1
KO
K06491
neural cell adhesion molecule
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
hsp04514
Cell adhesion molecule (CAM) interaction
hsp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
118105771 (ncam1b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
118105771 (ncam1b)
04517 IgSF CAM signaling
118105771 (ncam1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118105771 (ncam1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118105771 (ncam1b)
04090 CD molecules [BR:
hsp04090
]
118105771 (ncam1b)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118105771 (ncam1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
hsp00537
]
118105771 (ncam1b)
04091 Lectins [BR:
hsp04091
]
118105771 (ncam1b)
Membrane trafficking [BR:
hsp04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
118105771 (ncam1b)
Cell adhesion molecules [BR:
hsp04515
]
Immunoglobulin superfamily
NCAM1/2
118105771 (ncam1b)
CD molecules [BR:
hsp04090
]
Proteins
118105771 (ncam1b)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
118105771 (ncam1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
hsp00537
]
Others
118105771 (ncam1b)
Lectins [BR:
hsp04091
]
I-type lectins (Siglecs)
118105771 (ncam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
V-set_CD47
Ig_PDGFR_d4
C2-set_2
Pur_ac_phosph_N
C2-set
Motif
Other DBs
NCBI-GeneID:
118105771
NCBI-ProteinID:
XP_035009477
LinkDB
All DBs
Position
4:complement(8602080..8673245)
Genome browser
AA seq
1239 aa
AA seq
DB search
MVQPRDVFLALLLWGSTVSLEVQITPSHGEISLGESKFFMCEAVGVAKHIDWFGPSGDRI
EPNRPDITVTRNDESSSTLTLYKAGIENAGTYKCVATNGDQQGESTVKVKIFQKITFTNV
PSPQEFTERDNADIVCDVVSSPPPTVIWRYKGSRIQMEKDVRFKVLSNNHLQIRGIKKTD
EGSYTCEGRLMARGEIDLRVIKVVVNVLPTIRVWQSEVNATADVGQPAMLTCAADGFPEP
MVTWTRGDVVLDAGEKYSFNEDGSEITIMDVTKLDEGDYTCIAKNKAGESEQELSLRVFV
KPRITFIVNQSTSEMEEQVTLTCEASGDPTPTINWSYGERAFTEGEQAHLNRIYQASWTR
PEHHKSLDGNVVVRSDARVSSLTLKYVKYTDAGSYLCTATSAIGEDGQSAYLEVRYAPKI
HGEVAVYTWEGNAVNISCEVKAHPSDASIVWLRDRLQLPNSNTTNIKIFRTPSVSFLQIT
PESENDFGSYNCSASNEMGTESKEFLLIQAEVPSAPFISEVRPFSTSAQIQFAEPDSTGG
VPVLKYKAEWRTQGRGSWAQEVYVVEDGAISEVTITDLKPEGNYEMKLSAINGKGEGESS
PAEFFKTEPVHGTFRFFTEDTEGNPNPPKLEGAVQPKGNSLRVSWIKQDDGGSPILHYLI
RYKPIQASEWKPEIRLPSGSEYVVLSSLEWDTEYNVYVVAENQKGKSQPASMSFRTSTQP
EAIPDMGEEAALSMGIMIWAGILVVVFLLLLLAVDVTCYFVNKCGLIMCLCGKSGTGTKG
HNLEEGKAAFVKDESKEPIVEVRTEDEYTANHNAAGPTEPNEMTPLTEPELAAFTAALAL
ETLSSVATNSDTATATIDPAQDSPSSESTTLTFSLSTPANDPSPTPIRAPAPTPESNVTP
LAPILFTAAIEAKMAPLVEQRGSYAPEEQEKITTPPCTPETPKPQKSGTPIPPKRRHSPK
LAALNAKGSPPVSPLATSSPASSPAPDTKKKAPSPPVAKPLTKQDPVALAFEIPAQTASA
RANTAPPKPDTDSNATAPDSSGRSLTASDTNNPSDQTVDSNTPTAKDAATSSPSVTHTAL
NAEESAPLVADVPSPLPVTTIPTPAPPRPQGLVSNDLHTAPSDMYDFLTPDVGPRFSADL
DLELTNGTERRFLPPADLISLESPPSAPSLPNGDGADLPPSGPVLDASETLAKTAPVNDE
KLFSDEKVKLEEAGFSNALTEIAAEHNSVMQTKTTESKA
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggtccagccacgggatgtttttttagccttgcttctctggggcagcacagtgtcactg
gaagtgcagatcacaccaagtcacggtgagattagcctgggggagtccaaattcttcatg
tgtgaggctgtcggtgttgccaagcacatagactggtttggaccgagcggcgacaggata
gaaccgaacagacccgacataacggtaacccgtaacgatgagtcatcctccaccctcaca
ctgtataaagctgggattgagaatgcggggacatacaagtgtgtcgctaccaatggagac
cagcaaggggagtcgaccgttaaagtgaaaatctttcaaaaaatcaccttcacgaatgtt
ccctcaccccaagagtttactgaaagagacaatgccgacatcgtttgtgacgtggtcagt
tcccctcctcccactgtcatctggagatataaaggatcaagaatacagatggagaaagat
gttcgctttaaggtgctgagcaacaatcaccttcagatccgtggcataaagaagacggat
gagggctcatacacctgtgagggtcgcctcatggcccgcggcgagattgatctgcgggtc
atcaaggtcgtggtgaacgtgctcccgaccatcagggtatggcagtcagaggtgaatgcc
acagcagatgtcgggcagcctgccatgttgacttgtgctgccgatggctttcctgaaccc
atggtgacatggacaaggggtgacgtggttctcgacgcaggagagaagtacagctttaat
gaagatggctctgaaattacaataatggatgttaccaagctggatgaaggagactacaca
tgcattgccaagaacaaggctggggaaagtgagcaggagctcagtctcagagtgtttgtc
aaacccaggatcacattcatcgtgaaccagagcacgtcagagatggaggagcaggtaact
ttgacttgtgaggcttcaggtgatccaactcccaccatcaactggagctatggcgagcgc
gccttcaccgaaggagaacaggcacatctaaacaggatctatcaggcatcatggactcgg
cctgagcatcacaagagtctggatgggaatgtggtggtgaggagtgacgctcgtgtgtcc
tccctcactctgaagtacgtgaagtatacggatgccggctcgtacctctgcacagcaacc
agtgccattggagaggatggtcagtcggcatacctggaggtccgctatgcccctaaaata
catggtgaagtggcagtgtatacctgggaggggaatgcagtgaatatcagctgtgaggtc
aaagctcatcccagtgatgcgtctattgtttggctgagagaccgactgcagctgcccaac
tcgaacaccaccaacattaagatcttcaggactccatcagtcagcttcctgcagataacc
ccagagtctgaaaatgactttgggagctataactgctccgcctctaatgagatgggcaca
gagtccaaggagttcctgctcattcaggccgaggtgccgtcggctccgttcatcagcgag
gtgagacccttctccacctcagcacagatccagtttgcggagcccgattccactggaggc
gtccctgtcctgaagtacaaagcggagtggaggacgcagggcaggggcagctgggctcag
gaggtctacgtggttgaagatggcgccatcagtgaggtgaccatcaccgacctgaaacca
gagggcaactacgaaatgaagttgtctgccatcaacggaaagggtgaaggtgaaagcagc
ccggcagagttcttcaagacggagcctgtccacggcacttttcgttttttcactgaagac
acagaagggaatcccaaccctcctaagcttgagggggctgttcaacctaaaggtaactcg
ctcagagtcagctggatcaagcaagacgacggcggctcacccatcttacattatctcatc
cgctacaaaccaatacaagcgtcagagtggaaaccagagatccgactacccagcggcagc
gagtacgtggttctcagcagcctggagtgggacacagagtacaatgtgtatgtggtggca
gagaatcagaagggcaagtcccagccagcgagcatgtccttcaggacgtccacgcagcca
gaagccatcccagatatgggtgaggaggcagcgctctccatgggcatcatgatctgggca
gggatccttgttgtggtgtttctgctgctgctgctggcggtggacgtcacctgctacttt
gtcaacaaatgtggcctcatcatgtgcctctgcggcaaatctggcaccgggaccaaagga
cacaacctggaggagggcaaggcagcgttcgtgaaagatgagtccaaagagccaatagtg
gaagtcagaacagaggacgagtacacagccaatcacaacgcagcaggacccacagaaccc
aatgaaatgacacctctcacagagccagagctggcggctttcactgctgctctggcactg
gaaaccctctcgtccgtagccaccaactctgacacagccactgcaacaattgaccctgct
caggacagcccctctagcgagtccactaccctcacttttagcctgtctaccccggccaac
gacccctcacccacccccatcagggccccggccccgactccagagtcaaatgtgaccccg
ctggcccctatactcttcacggctgccattgaggctaaaatggccccgttagtagaacaa
agaggaagttacgccccggaagaacaggagaaaataaccacccctccttgtacccctgaa
acacctaaacctcaaaaatctgggacaccaataccaccgaaacgtagacactctcccaaa
cttgccgcactgaatgctaaaggtagcccccctgtatctccactcgccacgtcctccccg
gcatcctctcccgctcccgacaccaagaaaaaggctccgagcccaccggttgccaagccc
ctgacgaaacaagaccctgtagccttagccttcgagataccagcgcaaactgcctccgct
cgagcaaacactgcccctccaaaaccagacaccgattcaaacgccactgccccagattcc
agtgggcgtagccttactgcctccgacaccaacaacccctccgaccaaactgttgacagc
aacacacccactgccaaagatgctgctaccagctctccctcagtgacccacactgctctt
aatgctgaagaatctgctcctctagttgcagacgtcccctctcctcttcccgttactacc
attcctactcctgccccccctcgtccccaggggctggtctccaatgatctccacacagcg
ccatcagacatgtacgactttctaacccccgacgtggggcccagatttagtgcagattta
gacttagagctgacaaatgggacagagagacgcttcctcccccccgcagaccttattagc
ttagagagcccgccctctgccccctctctgcccaatggagacggcgcagacctccccccc
tctggcccagttctggacgcatcagagactctggccaagactgctcctgtcaacgatgag
aagcttttttccgacgagaaagtcaagctggaggaggcaggattttcaaacgccctgaca
gagatcgctgcagaacacaacagtgtcatgcagacaaaaaccaccgagagcaaagcatga
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integrated database retrieval system
