Hippoglossus stenolepis (Pacific halibut): 118105831
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Entry
118105831 CDS
T08308
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118105831 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118105831 (ddx6)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118105831 (ddx6)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118105831 (ddx6)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118105831 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
118105831 (ddx6)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118105831 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
AAA
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-GeneID:
118105831
NCBI-ProteinID:
XP_035009666
LinkDB
All DBs
Position
4:3840304..3852794
Genome browser
AA seq
484 aa
AA seq
DB search
MSTARTENPMILGLSNQNGQLRGSVKPAGAPGGGGGGPQLQQLQLNQVKGTINNGSSQSA
PTTNAVIKPGDDWKKNLKLPPRDTRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDHIQAVVIVPTRELALQ
VSQICIQVSKRMGGVKVMATTGGTNLRDDILRLDETVHVIIATPGRILDLIKKGVAKVNQ
VQMIVLDEADKLLSQDFMAMMEEILGFLSKQRQILLYSATFPLSVQKFMNAYLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGE
EVKP
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccaggacggagaacccgatgattctgggcttgtcgaaccagaacgggcag
ctcaggggctcggtgaaaccggctggagccccgggcggaggtggaggaggcccccagctg
cagcagctgcagctaaaccaggtgaaaggcacaatcaacaatggcagctcccagtcggcc
ccgacgacaaacgctgtcatcaagcctggagatgactggaagaagaatttgaaattgccc
ccaagagacacgaggatgaaaacttcggatgtgactgcaacaaaaggtaacgagtttgaa
gattactgcctcaagagggagctgctcatgggaatcttcgagatgggctgggaaaagcca
tctccaattcaggaggaaagcattcccattgcactgtcaggaagggatattttggccaga
gccaagaatggcacagggaagagtggagcctacctcattcccttacttgaacgcattgac
ctgaagagggaccacatacaagctgtggtcatagtgcccaccagagaactggctctgcaa
gtcagccaaatatgtatccaggtcagcaaacgtatgggcggagtgaaggtgatggcaacc
acaggtggaaccaacttgcgcgacgacattttgagactcgatgaaacagtacatgtgatc
attgcgactcccgggaggattttagacctcatcaagaaaggagtggccaaagtcaatcaa
gtgcagatgatagttctggatgaagctgacaaactcttgtctcaggactttatggccatg
atggaggagattctgggcttcctgtccaaacagaggcagattcttctttattctgcaacc
ttccctctcagtgtgcagaagtttatgaatgcctacttgcagaaaccttatgagatcaac
ctaatggaggagctgacactgaagggtgtgactcagtattacgcttatgtaactgaaagg
caaaaagtccactgccttaacaccttgttctccaggctccagatcaaccagtctataatc
ttctgcaactcctctcagagagtggagctccttgccaagaagatctcccagctcggttat
tcatgtttctacattcatgccaagatgcgacaggagcaccgcaaccgtgtgttccacgac
ttcagaaacggcctgtgtcggaatcttgtctgcactgacctcttcacaagaggaattgac
attcaagctgtgaatgttgtgatcaattttgactttcccaagctgggagaaacgtacctt
catcgcattggtagatctggccgctttggacacttgggtctcgccatcaacctcatcact
tacgatgatcgcttcaacctgaaagggatcgaggagcagctcggaacagagatcaagccc
atccctggcatcatcgacaagagcttatacgtggcagagtaccacagcgagagtggcgaa
gaagtcaagccatga
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integrated database retrieval system
