Hippoglossus stenolepis (Pacific halibut): 118105881
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Entry
118105881 CDS
T08308
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03030
DNA replication
hsp03420
Nucleotide excision repair
hsp03430
Mismatch repair
hsp03440
Homologous recombination
hsp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118105881 (rpa1)
03420 Nucleotide excision repair
118105881 (rpa1)
03430 Mismatch repair
118105881 (rpa1)
03440 Homologous recombination
118105881 (rpa1)
03460 Fanconi anemia pathway
118105881 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118105881 (rpa1)
03032 DNA replication proteins [BR:
hsp03032
]
118105881 (rpa1)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118105881 (rpa1)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118105881 (rpa1)
DNA replication proteins [BR:
hsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118105881 (rpa1)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118105881 (rpa1)
MMR (mismatch excision repair)
118105881 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
118105881 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
118105881
NCBI-ProteinID:
XP_035009768
LinkDB
All DBs
Position
4:7955313..7979950
Genome browser
AA seq
598 aa
AA seq
DB search
MAQLTEGAIETLSNGSGVNDAVLQLVNIRKIEGGSGPARFRVMMSDGLHTLSSFMLSTQL
NCMAEDNRLAPNCICILKRHVTNNLKDGRRVVIILEIEVIKSADEVDGKIGDPTPYTEGK
GQQSAPNTEPRPPLLQQNRNEAMNRGSNRDFGKKASAVPSTPGGSSKIVPIASLNPYQSK
WTIRARVTNKGSIRTWSNSRGDGKLFSMELVDESGEIRVTGFNQEVDKFYSLAEVGKVYY
ISKASLKIANKQYTSVKNDYEMTLNGESTIIPCEDSGDVPMVQCEFVSIGDLESREKDAI
IDVIGVCKKVDEVTRLTTKSNKEVSKRTLDLMDMSGKLVTVTLWGEEAEKFDGSGQPIVA
IKGAKVSDYGGRSLSASFSSTLMVNPDIPEAYKLRGWYDKEGHAMEGQSLTEAKGGGGGG
NTNWKTLTDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACSSQDCNKKVLDQQNGMF
RCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNEAAF
DEIFQQANFHTFVFRSRVKLETYNDESRIKATVMEVKPVDHKEYCKRLIVNIRKLAAQ
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctcacagaaggagccatcgagactctgtcaaatggctcaggagtcaacgac
gctgtgcttcagttggtgaacatccgcaagatcgaagggggaagtggtccagctcgcttt
cgggtgatgatgagtgacgggctgcacactctgtcctctttcatgctctccacccagctg
aactgcatggccgaggacaacagactggcccccaactgcatctgtatcctgaagaggcac
gtgaccaataatctaaaggatggacggcgtgtggtgatcattttggaaattgaagtcata
aagtctgctgatgaggtcgatgggaaaataggagaccctactccatacacagagggtaaa
ggccagcagtcggctccaaacaccgagccccgtcctccactgctgcaacaaaatagaaat
gaagcaatgaacagaggttccaatagagactttgggaagaaggcatctgctgtgcccagc
actccagggggcagctccaaaattgtacccatcgccagcctcaacccgtaccagtccaag
tggaccatccgtgcccgtgtaaccaacaagggcagcatccggacatggagcaactctcgc
ggtgacggcaaactcttctccatggagctcgtggatgagagcggggagatacgagtgact
ggtttcaaccaagaggtggacaagttctacagcctggctgaggtcggcaaggtctactac
atctccaaggcctccctgaagatcgccaacaagcagtacacatcggtgaagaatgattac
gagatgacgctgaacggagagtccaccatcatcccctgcgaagacagcggcgacgtgccc
atggtgcagtgcgagtttgtttccatcggtgacctggagagcagagaaaaagatgccatc
atcgatgtgattggagtgtgcaaaaaagtggacgaggtgacccgcctcacgacaaagtcc
aacaaagaggtgtccaagaggacgctcgatctgatggacatgtctggcaagctggtgact
gtcactctgtggggagaggaagcagagaagtttgatggctctggacaacccatcgtggcc
attaagggggcgaaggtctctgactacggaggccgctccctctcagcatccttcagcagc
accctgatggtcaacccagacatccctgaggcgtataaactccgaggctggtacgataag
gagggccacgccatggaaggacagtctctgacggaggctaaaggtggcggcgggggtgga
aacaccaactggaagaccctcaccgacgttaagaccgagcacctgggacacggagacaag
gcagactactacacctgcatagccaccattgtgtacctgcgcaaggaaaactgcctgtac
caggcctgctcgagccaagactgcaacaaaaaagtgttggaccagcagaatggcatgttc
cgctgtgagaagtgtgacaaagagttccccaacttcaagtaccgcctcatcctgtcggct
aacattgcagattatggagacaaccagtgggtgacttgcttccaggagagtgcagaggcc
atcctgggccagaacgcagcttacctggggcagctcaaggactcgaatgaagctgccttt
gatgaaatcttccaacaagccaacttccacacatttgtcttccgcagcagagtgaagcta
gaaacatataacgatgaatccagaatcaaggccacggtgatggaggtgaagcccgtcgac
cataaggaatactgcaagaggttgatcgtgaacataaggaaactggctgcccagtag
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