Hippoglossus stenolepis (Pacific halibut): 118105979
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Entry
118105979 CDS
T08308
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04382
Cornified envelope formation
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04518
Integrin signaling
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118105979 (col4a4)
04518 Integrin signaling
118105979 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118105979 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118105979 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118105979 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118105979 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118105979 (col4a4)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118105979 (col4a4)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118105979 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118105979
NCBI-ProteinID:
XP_035009959
LinkDB
All DBs
Position
4:697819..726532
Genome browser
AA seq
1665 aa
AA seq
DB search
MLPTSCCAPFTWLCCLLMILTAPPAALGGDQSEPCAGRDCSTCKCFPAKGARGTPGGLGE
QGRQGPPGFPGPQGPPGEKGQRGDEGPTGAAGLKGDVGSVGVLGFPGLEGVPGHPGPAGG
PGFPGLDGCNGTRGQRGDPGLPGEQGPDGELGFPGLKGFPGDPTVYFIQYPGVPGETGTR
GLTGLQGEQGLPGPIGGLGPAGLDGTNGLPGLPGSRGPPGEKGRSLPGQKGDEGEQGLQG
PPGPFEYVDPPEDLYIKGEQGPKGVKGVCGLDGLPGLDALPGIKGEKGILGFPGSRGFSG
SSGLVGEKGFKGIKGSPGLPGLIGREGPKGMMGDPGPKGLPQEADITHTGEDGDPGPSGP
SGPPGVMGLMGMHGPPGAPARLIPGTTGAVGQGGVPGSKGDRGDPGQVFTDGPIPGEPGK
PGRPGLKGPRGEPGNPGRYCLPGAIGESGEPGQQGPSGAQGFPGFKGTDGDCSCGPPVIL
RGPPGSVGDIGYAGFPGVQGAPAQRGEQGEPGDVGESGQQGLVGFPGVKGFKGQKGDFIV
VDIIGEKGNRGQLGPEGRQGFSGRRGLDGLPGAPGDPGPQGESFSNSPGERGFPGFLGPK
GLSGPPGSRGVGVVGAIGQQGALGDPGPSGIQGPLGPKGATGETLPCVPRNPGPPGEKGD
TGNAGYPGFPGPSGFRGITGPDGIKGDKGQSGLPGLPGRQGPPGLVGDTGEEGPEGFSYG
GDPGSPGIQGFPGLRGPAGDSEVGPSGPRGFPGPLGSQGPKGVPGPPGNDGLQGALGLAG
GPGAKGQKGQDGAPGITGPAGPSPNFCEIGKPGLRGPFGPQGPIGPPGFQGEKGEIGEVG
PPAFGPQGPVGKPGSPGFPGFPGLQGPTGPIGDSGLPGPNGQKGLLGPQGKYGGPGAPGQ
TGAPGAPGTTGERGFNGRDGAQGCEGTKGEKGCNGAPGSPGETKYILIKGEGGKQGTSGI
SGFPGPRGSKGVQGATGNSGYPGINGPSGIIGPPGTPGRYSTPGLPGPPGRQGPPGLIGF
PGETGDSGDLGCPGNSGEPGREGCTGQKGDKGDSVGCPGTPGERGLPGDFGPSGPPGPRG
EPGGPGFIGDPGLKGCKGDPGHRGDPGQSGVIGPYGPRGRPGGPGLPGNAGTDGPPGPQG
CPGLQGPPGPLGLHGLDGLKGVKGDMGTRGLALPGPPGLKGLPGDKGPQGPPGPCGPSQP
GQPGTKGPPGPKGPQGSYGSPGKPGPSCKDPVPGPRGDPGCPGPDGEPGCPGDMGDPGPN
PPVAGDEGDNGDTGYRGLVGLKGYQGSKGLPGIAGDWGVKGMKGSQGLMGLPGNRGPRGC
PGSGAPPGPKGLDGLVGPKGEKGGVSPCPYYPPAQPGPPGPPGPPGKPGEIGLIGEIGPR
GFKGVTGDPGSEGPIGFVGPSGPDGNQGEAGLQGENGDVGAKGDSGPIGDRGPPGQSKNL
NSGFLLVRHSQSNQIPTCPLNMRVLWNGYSLLYLEGQEKAHTQDLGQAGSCMQVFSTMPF
STCNMGACSYASRNDKSYWLSTTAALPSIPVSGPSIEEHISRCVVCEAPSSPVALHSQTS
DQPDCPPQWTSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLSDFRAQPFVECQGPRGTCHY
FANIYSFWLTIVDTSTVASNSSSTTLTDGWQQRSNIGKCNVCMRD
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctacttcctgctgcgcccccttcacctggctctgctgcctcctgatgatcctg
accgctcccccagccgctcttggaggcgaccagtcagagccgtgcgctgggcgggactgt
tccacctgcaagtgttttccagccaaaggagcgaggggtactccaggtggtctgggggaa
cagggtcgtcaggggcccccaggattcccgggtcctcaggggcctcccggagaaaagggc
cagagaggagacgaggggccgacaggagctgcaggcctgaaaggagacgtgggaagtgtt
ggtgttcttggatttccgggtttagagggagtcccgggtcacccaggtcctgctggaggt
ccaggttttccgggtctggatggatgtaatggcaccagagggcagagaggcgatcctgga
cttccaggagaacaaggacctgatggagaactgggttttccaggactgaagggatttcca
ggagatccaacagtttacttcatacagtaccctggagtacctggagagactgggaccaga
ggacttactggacttcagggtgagcagggactccctggaccaattggaggtctgggtcca
gcaggactggacgggaccaacggtctcccgggtctgcctggatccaggggtccacctgga
gaaaaaggtcgatctctgcccggacagaaaggagacgagggggaacagggtctccagggg
cctccagggccgtttgagtacgtcgaccctccggaagacctgtacatcaaaggagaacag
ggtcctaagggggttaaaggcgtctgtggactcgatggacttccaggtctggacgcactt
ccaggaatcaaaggagagaaggggattctgggattccctgggtccaggggattttctggc
agctctggtctggtcggagaaaaaggattcaaggggatcaaaggaagtccaggtctccca
ggtctgattggacgagaaggtcctaagggcatgatgggagatccaggacctaaagggctc
cctcaggaggccgacatcactcacacaggtgaggatggggaccccgggccctctggaccg
agtggccctccaggagtcatggggctgatgggaatgcatggacccccaggagcccctgcc
agattaatacctggaacgacaggtgctgtgggtcagggcggagttccaggatccaaggga
gacagaggagatcctggtcaagtctttaccgatggacccatacccggagaacctggaaaa
ccaggacggcctggactcaaaggaccgaggggagagccagggaatccaggtcgttactgt
cttcccggggctataggagaatctggagagccgggtcaacagggaccctcaggggctcag
ggcttcccaggcttcaaaggcactgatggggactgttcctgtggccctcctgttatactg
aggggccctcctggctctgtgggtgacatagggtatgctgggtttccaggagtccaggga
gccccagcgcagagaggagagcaaggtgaacctggagacgttggagagagtggacaacag
ggtctggttggatttccaggtgtcaaagggttcaaagggcagaagggagatttcattgtg
gtggatattattggtgaaaagggaaacaggggccagctgggccctgaaggaaggcaagga
ttctcagggagaagaggactagatgggctccccggggccccaggagaccccggtccacag
ggtgaaagtttctctaactctcctggagaaagaggcttcccaggatttctagggccaaag
ggattatcaggacccccaggttcccgtggagtaggtgtagtcggtgctataggacagcag
ggggccctgggggaccctggaccttcaggaatccagggtccactagggccaaagggggct
actggggagactctaccctgtgtacccagaaaccccgggccccctggagagaagggagac
actggaaacgcaggttatccaggattcccgggaccttcaggctttcgtggcatcacggga
cctgatggaattaaaggagataaaggacaatctggacttcctggactacctggacgacaa
ggacctccaggtttggtcggagataccggagaagaaggacctgaggggttcagttatggt
ggagatccgggctctcctgggatccagggctttcctggactcaggggcccagcaggggac
tctgaggttgggccttcaggacccagaggtttcccaggaccactaggctctcagggacct
aaaggagtccctggccccccaggcaatgacggactacaaggagccctgggtctggctggg
ggccctggagcaaagggccagaaaggacaggatggagccccagggataaccggtcccgca
ggcccctcacctaacttctgtgagatcggaaaacctggtttaaggggtccctttggccct
cagggacccattggaccaccaggttttcagggggagaaaggtgagattggggaggtgggt
cctccagcttttggccctcaaggtcctgtaggtaaaccgggctctccaggtttcccaggg
ttcccagggctgcaaggccccactggccccattggagactctggactgccaggacccaac
ggtcagaaaggtctgcttggcccccaaggaaagtacggagggccaggggctccaggacag
accggggcccctggagctccagggacgactggggaaagagggttcaatggacgagacgga
gctcaaggatgtgaagggacaaaaggagaaaaaggctgtaatggggccccagggtctcca
ggggaaaccaagtacatcctcattaaaggagagggaggaaaacaaggaacctctggcatc
agtggcttcccaggaccacgaggaagtaaaggtgtccaaggtgctacaggtaattcaggg
tatccaggaatcaacggaccctcaggtatcataggacccccaggaacaccaggtcgctac
agtacgccaggattaccaggaccacctggacgtcaaggacctcccggactcatcggcttc
ccaggagagacaggagattcaggtgacctgggatgtccggggaactctggagaacctggt
cgcgaaggatgtaccggacagaaaggtgacaaaggagactctgttggttgtcctggtaca
ccaggagagaggggacttcctggagacttcgggccgtctggacctcctggacctcgtgga
gagcctggaggacccggtttcattggggatccaggtttgaaaggttgtaaaggagatccc
ggccaccgtggagacccgggtcaatcaggtgtgatcggtccctatggtcccagaggtcgt
ccaggtggtccaggtcttcctggcaatgcaggtactgatgggcccccaggaccacagggc
tgcccaggacttcaagggcctcctggaccgctgggacttcatggactggacggacttaaa
ggagtgaagggggacatggggaccagaggtctggctctgccaggtcctccaggtctcaaa
ggtcttccaggggataagggtcctcaaggtcctccaggtccctgtggtccatcccagcca
ggacaaccaggaaccaaaggccccccaggacccaaaggaccacaaggcagttatggatct
ccaggtaaacctggaccaagctgtaaagatccagtcccaggccctcgtggagatcctggt
tgtcctggaccagatggcgagccaggttgtcctggggacatgggggatcctggtccaaat
cctcccgtagctggggatgagggagataacggagacacagggtacaggggactagtggga
ctaaagggatatcaaggatccaaaggattgccaggcatcgctggagactggggagtgaaa
ggtatgaaagggtcacaaggtctgatgggactacctggtaatcggggcccaagaggttgt
cctggttctggagcacctcctggacctaaaggtcttgatggattggtgggtccaaaagga
gaaaagggaggagtctccccctgcccctactacccccctgcccaaccggggcccccaggt
ccccctggcccccctggtaaacctggagagattggcctcattggagaaatcggcccgagg
ggtttcaaaggtgtaacgggggatcccgggtctgagggaccaattggttttgtggggccc
tcaggtccagatggaaaccaaggagaggcaggcctgcagggggagaacggagatgttgga
gccaaaggtgattctggtccaatcggtgaccgcggtcctcctggacaatccaaaaacttg
aactcaggtttcctgttggtgaggcacagccaatcaaatcaaattcccacctgtccatta
aacatgagggtcctatggaacggatacagtctgctgtacctggagggtcaggagaaggct
cacactcaggacctgggtcaggccgggtcatgtatgcaagtgttttccactatgccgttc
tccacctgtaacatgggagcctgctcttacgcaagtcgcaatgacaaatcctattggctg
tccacgacggcggccctccccagcatacctgtgagcgggccctccatcgaggagcacatc
agccgctgtgtggtgtgtgaagccccctcctcacctgtcgcactgcacagccagacctcc
gaccagccagactgccccccccagtggacgagtctgtggacagggtactcctttctcatg
catacgggtgcaggtgatgagggcggcggtcagtctctgacgtcatcagggagctgtctg
tcggacttcagggcccagcccttcgtggagtgtcaggggccccgaggaacctgccactac
tttgccaacatctacagtttctggctgaccatagtggacacgagcaccgtcgcctccaac
agctcctccaccacgctgaccgacggctggcagcagaggagcaacatcgggaagtgcaac
gtctgcatgagggattga
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