Hippoglossus stenolepis (Pacific halibut): 118106119
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Entry
118106119 CDS
T08308
Name
(RefSeq) coatomer subunit beta'-like
KO
K17302
coatomer subunit beta'
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118106119
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118106119
Membrane trafficking [BR:
hsp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
118106119
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
118106119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_LRRK2
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SCAP
Clathrin
Motif
Other DBs
NCBI-GeneID:
118106119
NCBI-ProteinID:
XP_035010282
LinkDB
All DBs
Position
4:complement(25391307..25407722)
Genome browser
AA seq
1224 aa
AA seq
DB search
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMVVSLYSGAVVVWNHDTQTMVKTFELCDLPV
RVARFVARKHWLIAGSDDMQIRVFNYNTLERVHMFEAHADYIRCIAVHPTQPYILTSSDD
MLIKLWDWDRKWACSQVFEGHTHYVMQIVFNPKDNNQFASASLDRTIKVWQLGSRTPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDCLVKIWDYQNKTCVQTLEGHAQNVTCVCFHPG
LPIILTGSEDGTVRVWHSNTYRLENTLNYGMERVWCISGQRGSNSVAIGYDEGSIIIKLG
REEPAMSMDSSGKIMWARHSEVQQANLKAMGEAEFKDGERLMLGVKDMGSCEIYPQTIQH
SPNGRFVVVCGDGEYIIYTAVALRNKSFGSAQEFVWAHDSSQYATREGNNMVKIFKNFKE
KKAFKPDFGSEGIFGGFLLGVRSNNGLAFYDWETADLVRRIEIQPKHIFWSDSGELVCIA
TNESFFVLRYLPEKVSAALESKEAMAEDGVEDAFEVLGEVSEVVKTGVWVGDCFMYTSSV
NRVNYYVGGEIITIAHMDRTMYLLGYIPKDDRLYLGDKELNVVSYSLLLSVLEYQTAVMR
RDFSTADKILPTIPREQRNRVANFLEKQGFRQQALAVSTDPEHKFELALQLGELDTAYQM
ALEAESEHKWKQLAELATTKCQFTLAQECLNHAQDYGGLLLLATASGNTDMVGKLAEGAE
KDGKTNVAFLTYFMQGRLDKCLDLLIKTNRLPEAAFLARTYLPSHVPRVVRLWKESLSKV
NQKAADALADPTQYANLFPGLQQTLLAEQYLKETHVRVRPAAEYPLIMPNEDRNVLEESA
GFVSKEEASEPEEEVQSVKESFIVAAAAPPQAAAPAVEEPIPQEVTDPVSTTEEESIPSA
ASPLPVAMTQEDDDTQVAGGEVAAPEPEVAAIREDTITTLEEASDPVEEDILEESIIDTT
PKEPEMVQSTPAEKVASSVVEDVQEMSQVTDAANDASDSETCITETTVEAVMATKTLAAE
DVPVNTALTIDTDEQATESAAAEEIPVHDKQEKDVISFDEPPVIDTEAVALEAETSVTKE
EVLETAPSVVAVEELISFENTGSSVLDVPVQVETSTGFDLDPLMDPLDDTMPVLKPDPAQ
EPREEGQSTEGTEDSQEPLVSLQAESLVLTALEAPTETNVASDGPGRDEPAEELEDLDDL
DLDNFDLEDIDTTDINLDDELMSE
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgcgattggacatcaagcggaggctgacggcccgatcggaccgggtgaagagc
gtggacctgcaccccacagagccgtggatggtggtcagcctctacagtggcgccgtggtg
gtctggaaccatgacacacagacgatggtgaaaaccttcgagctgtgtgatctgccggtc
agagtggccaggtttgtagccaggaagcactggctcattgctggatcagatgacatgcag
atccgtgtgttcaattataacacactggagagagttcacatgttcgaggcccacgctgac
tacatccgctgcatcgctgtccaccctacccagccctacatcctcaccagcagtgatgac
atgttgatcaagctgtgggactgggacagaaagtgggcctgtagtcaggtgtttgagggc
cacactcactatgtcatgcagattgtcttcaaccccaaagacaacaaccagtttgccagt
gcctctctggaccgaaccatcaaggtgtggcagctgggctcccggactcctaacttcact
ctggagggccacgagaagggagtgaactgtattgactactacagtggaggagacaaaccc
tacctcatatctggggcggatgattgccttgtcaagatctgggattatcagaataaaacc
tgtgttcagactctggagggtcacgcccagaatgtgacttgtgtctgcttccaccctggg
ctgccaatcatcctcacaggctctgaggatggtactgttcgagtgtggcactccaacacc
taccgactcgaaaacacactcaactatggcatggagagggtgtggtgtatctctggccag
cgtggctccaacagtgtggcaattggctatgatgaaggcagcatcatcatcaagctgggt
cgggaggagcctgccatgtcgatggactccagcgggaagatcatgtgggcgcgccattcc
gaagtgcagcaggccaacctgaaggccatgggagaggctgagttcaaggatggagagagg
ctgatgctgggtgtcaaagacatgggcagctgtgagatctacccccagactatccagcac
agccccaacgggaggtttgtagtggtgtgtggagatggagagtacatcatctacactgcc
gtggccctgaggaacaagagctttggctcagctcaagagtttgtctgggcgcacgactcc
tcacagtacgccacaagagaaggaaacaatatggtcaaaatctttaagaactttaaagag
aagaaggcttttaaacctgactttggatctgaaggaatatttggtggtttcttactagga
gtgaggtcaaacaacggtctggccttctacgactgggagacggctgacctagtccgccga
atcgaaatccaacccaaacatattttctggtctgactctggagagctggtgtgtatcgcc
acaaatgagtctttctttgtgctccgctatctgccagagaaagtgtcagcagccctggag
tcaaaagaagctatggccgaagatggtgtagaggacgcctttgaggtgctgggggaggtc
tcagaggtggtgaagacaggagtgtgggtgggagactgcttcatgtacaccagctctgtt
aacagagtcaactattatgtcggaggagagatcatcaccattgctcacatggacaggacc
atgtatctgctcggctacatccccaaggacgaccgtctctaccttggagacaaggaactc
aacgtggtcagctactccctgctgctgtctgtgctggaataccaaactgctgtcatgagg
agggacttcagcacagccgacaagattctacccacaatacccagggagcagagaaaccgg
gttgccaactttttggagaaacaaggtttcaggcagcaggccctggctgtgtccacagac
ccagaacacaagtttgaactggctctgcagctgggagagctcgacactgcctaccaaatg
gctctggaagcagagtcagagcacaaatggaagcagctggcagaactggcgaccacaaag
tgccagtttaccctggcccaggagtgtctgaaccatgctcaagattacgggggattactg
ctgctggccacggcctcgggcaacaccgacatggtgggcaagctggctgagggggccgag
aaggatggcaaaacaaacgtggccttcctcacctacttcatgcaaggacgattggacaaa
tgtctggacctcctcatcaaaacaaatcgactgccagaagctgcattcctggcaagaact
taccttcccagccatgtgccgagggtggtgcgtctgtggaaggagagtctgtccaaggtc
aaccagaaggcggcagatgctctggccgaccccacccagtacgccaacctgttccctggc
ctccagcaaaccctgctggctgagcagtacctgaaggagactcatgtcagggtcagacct
gctgcagaataccctctcatcatgccaaatgaggatcgtaatgttctggaggaatctgca
ggttttgtgtccaaagaggaggccagtgagccagaggaagaggtgcaaagcgtgaaggaa
agcttcatagtagcagcagctgcacctccacaagcagcagcaccagcagtggaggaacca
attccacaggaggtgactgatcctgtttcaacaaccgaagaagaatccattccatcagca
gcttcacctcttcctgtcgccatgactcaggaggatgatgacacccaggtggctgggggt
gaggtggctgcacctgaaccagaggtggcagcaataagggaagacaccatcactacatta
gaggaggcttcagaccctgtagaggaagacatcttggaggagtccatcatagacactacc
cccaaagagccagagatggtacagtccacacctgcagagaaagtcgcatcttcagttgtg
gaggatgttcaggaaatgtctcaagtgactgatgctgctaatgacgccagtgattctgaa
acatgcatcactgagacaacagtagaggccgtcatggcaacaaaaaccttagcagccgag
gatgttccagttaacacagcattaacaatcgacacagatgaacaagcaacagaatctgca
gcagctgaagaaattcctgttcatgacaagcaggaaaaagatgtgatctctttcgatgaa
ccacccgtcatagatacagaagcagtagcattagaagcagaaacttctgttactaaggaa
gaggttttggaaacagcaccatcagtggtcgcagtggaggagctcatctcctttgaaaac
acaggcagctcagtgctggatgtgcctgtgcaagtcgagacttctacagggtttgacctt
gatccactgatggacccacttgatgatacaatgccagtattaaagccagacccagcgcaa
gaaccaagagaagagggacagtccacagaagggacagaggacagccaggagcctcttgtg
tcgctgcaggccgagtcactggttttaacagcactagaagctcctacagagacaaacgtg
gcgtcagacgggcccggacgtgacgaaccagcagaggaacttgaggacctggatgatctg
gatctggacaattttgacttggaggatatcgacaccacagatatcaacctggatgacgag
ttaatgagtgaataa
DBGET
integrated database retrieval system
