Hippoglossus stenolepis (Pacific halibut): 118106126
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Entry
118106126 CDS
T08308
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118106126 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
hsp04091
]
118106126 (frem2b)
Lectins [BR:
hsp04091
]
C-Type lectins
Lecticans
118106126 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
TMEM154
LAX
DUF6522
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
118106126
NCBI-ProteinID:
XP_035010291
LinkDB
All DBs
Position
4:complement(5831906..5890568)
Genome browser
AA seq
3116 aa
AA seq
DB search
MARTILPHLHAPGTALLVLAVILTGDAVAQVFDSYGLSYALRSELTEDTILVANNGIRVP
FGRSVFVDPINDLVIQVQPGDRCSITVLDNDPLSQRPGHLSPKKFPCEFGPNDVKYSHFG
SRSPPRDRVTLQLRYDTQTDTIIIPFMMEVEVVFTQLEVLTKNMPLTVERLLGTSNPIDR
RILEFTYDRSAQQCKIASLSSGSVMPRYGKLVAEDRLGAMVDCDEFIQMNIRYQHTFALK
SPNRDYIPMLVELHDKEGNLLKQEFFQIMVRIREGEENTAPKPSFVAMMMMEVDQFVMTA
ITTDMLAAEDVESRDDELIFNITSPLSFEEGYIVSTDDRNLPITSFYQGDLKDLKIAYKP
PAVDSDTERIFQIEFEVVDTEGAVSDPFAFMIVVKPMNTLAPVVTRNAGQLLYEGQSRPL
SSSHNLEISDEDNLDKVQITVIDGLRRGELTVLGSRRKFFTPSDLDAGVVIYQHDGSDTY
SDNIIFRMTDGTNEVEFLFPITVVPTDDEPPIINANTGLVLFKNQMMPVSSLMLSAADID
SEDSTIKFITEPPFSTIGQVLLRQAEAPEDPSTWKFNTDDEMYEKVVSEWLQQDIIDGKL
FYKHVGPHSTSTVMDQFVFRVQDDNDPPNQSGESAFIIKILPVDDLPPELYPGTTLQITV
HEYQLTHFRRKFLRYSDLDSEDRDLKYMIIQPPTDTDENNPVVLGTLVLTESPNTVVTTF
TQAQINHHKIAFKPPDLELGITTHVLQFKYAVEDVSGNSVEGVFTIFLQPVDNTPPQITN
SGFTVLERGTHIITSAELDTSDTDTDSSQIIFTVTQPPLHGQIQFTFTDMTKGNTFNLED
IGNGRITYIHNGDESTVDLIQIDVSDRVHVVPISIKISVKPIDDEIPTISLPAGTIGSYI
DVLENGATEITSNVIQGRDEDTDDLRLTFIVEDPPLFGEILVRGVPSRTFTQADIINGHV
VYAHTSGEIGFTTKEDFFNLTLTDMSDEWTVGGNKITGVRVHVTILPLDSQAPELFVGPQ
FTVVEGEKNVIHILHISADDVDTPNDDLLCTIIVQPTSGYVENISPAPGSEKSRSGTAIS
AFTIKDIRLNHIYYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPISIIPSNDEKPEIY
MREFVVMEGMNIVIDTPILNGADADLPTDQLTFIISKPPKHGFILNQRTTGTVPVFNFTL
DQIREASSIVYEHDDSETTEDSFDIVLIDGKFSVEKTVIVMIIPVDDETPRMAINDGLEI
EIGDVKVIDGNVLKATDLDSEDSTLTYIIRYGPGQGYLQWTAPSGMLQNITVGMNFTQNE
VDLGLIVYIHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGGIDMVFPDVVSKGVSLKEG
GRVTLTTDLLSTSDLNSPDEHLVFTITRAPMRGHLECTDTPGMPISSFTQLQLAGNKVYY
LHTSDDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVVTVHGLVVTEGENKLITPF
ELTVEDRDTIDRLLKFTVTQIPVHGRLLFNNTRPVSSFTKQDLNENMISYKHDGTESAED
SFSFTVTDGTHTDFFVFPDTVFETRRPQVMKISVLPVDNGVPQIVVNRGAPTLRVLESGH
LGFVITSKTLKAEDRDSVQNSVTFRITVAPEHGYMINLGKGNVTITTFTQAEIDEMNICY
VLRDGDNPTNDNFYFSIEDNGGNKLKHQQFRLNWAWISLEKQSYVVDEEVKFLEVVLRRR
GYLGETSFVSIGTKDGTAEKDKDFRGKSQKQVQFNPGQTTATWRVRILSDSDYEVSETFQ
ILLSEPVMAALEFPEVATVEILDPDDESTVFIPSAVYNIEEDIGELLVPVRRSGDVSQEL
MVICYTQQVSATGTVPTMVLSYSDYISRPEDHHGILRFDKGEVEKSCRVVIIDDSLYEEE
ESFIVSLSMPMGGRVGSEFPEATITIIPDADDAPVFYFGNTDYHVDESDGFVEVQVWRTG
TDLSKAGTVTVRSRKTEPVSAEAGVDYVGISRNLDFAPGVNMQTFRVTILDDLGQPVLEG
PERFELILRMPMSGVLGEPSKSTILVNDSVSDLPKVQFRDAVYVGKEDSGRISATVYRSG
DISYRSTVRCYSRQGTAQVMMDFNERPNTDASVITFLPGEIEKPCVLLLVDDTEHEEEEE
LRLVLGSPKSESPFGASVGGQNETLIKIKDDADKSIIMFGETKFSVNEPMESGQVSVVKI
PVLRVGDTSKVSVVRVHTKDGSATSGEDYHPISEEIVFKEGDTEHYVEVEVLYDGVREMR
EAFTVHLKPDENMVAETKMSKAIIYIEEINSMADVTFPSVPRVVSLLQYDDIDRSRDSLP
LAGYPVICVTACNPKYPDYDKTGSICVSENINNTLTRYRWLVSAPTGPDGVTSPMREVDF
DTFFTSSKLITLDSVYFQAGSRVQCAARAVNSNGDEGLELPSHVVSISPDEGMCQPRVVG
TVGAEPFSAKLRYTGGEDTDHPNLIKVTVTMPHIDGMLPIVSTRALSNFELTLSPDGTRV
GHHRCSNLLDFTEVKTRHGFLTDATKNPEVIGETAPYQFSSSLRGSSTLRFYRNLNLEAC
LWEFTSYYDMSELLSDCGGTIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGAGGWQHFD
LQSELRLTFVYDTAILWRDGIGSPPEAELQGALYPTSMRINGHGRLVVNFRTEARFRGLF
VFAHPASPLTSMVMCPEHAGLTFNISLVRNEPTYNQPIQQWTFISDFAVRDYSGTYTVKL
VPCTSPPNLEYTIPPVCNPREPLTFDLDIRFQQVSDPVAAEFSLNTQMILISKRSLWLSD
GSMGFGQESDTAFSQGDTVYSRVMVDPVQNLGDSFICNIEKVFLCTGADGYVPKYNPSNF
EFGCLADAPSILYRFKIIDKAQPETQARSFGSVAFNAFLAVDDPDALALVRQPGSDGFKM
DSSALFQVSAGREWYIHTIYTVRSRDNANRGIGKRSLEYHVMSQHTDLPPKGQGRVRRSA
NDVPDVIEEIGVSNNRGTNILHIALDPGAQRRTSPEREIFTKGIILGEANHRDDGDDGLV
LIIGVFVGLLLTVLIVIVVVLLVRSKRGKKKDVPKTSSSAEPMMTQGLGGSDSSEV
NT seq
9351 nt
NT seq
+upstream
nt +downstream
nt
atggctcggactatcctcccgcatctgcacgcgcctggcaccgctctgctcgtgctcgcc
gtgatcctgacaggtgatgcggtcgcgcaggtttttgacagctacggattatcctacgcc
ctcagatccgagttgacggaggacaccatactggtcgccaacaatgggatccgcgtgcct
ttcgggagatcagtgttcgtggatcccatcaacgatttggtgatccaagttcagcccgga
gacagatgcagcatcacggtcctggacaatgacccgctgtcccagaggcccgggcacctg
tccccgaaaaagtttccctgcgaatttggccccaacgacgtgaagtattcccacttcggc
tccaggagtcccccgagggacagagtgacattacagctcaggtatgacacccagactgac
accatcatcatacctttcatgatggaggtggaggtcgtcttcacacagctggaggtactc
accaaaaacatgccactcactgtcgagaggctgctgggcaccagtaaccccattgacagg
cgaatcttagagttcacctatgacaggagtgcacaacaatgcaaaatagcctccctctcc
agtggcagtgtgatgcccaggtatgggaaacttgtggctgaggacagactcggagcaatg
gtggactgtgatgaatttattcaaatgaacatccgctatcagcacacttttgctttgaag
tcgccaaacagagattatattccaatgctcgtggagttgcacgataaggagggcaatttg
ctcaagcaggaattcttccaaattatggtccggattagagagggagaggagaacacggcc
cctaaacccagctttgtggcaatgatgatgatggaagtggaccagtttgtaatgactgct
ataaccacggacatgctggcagctgaggatgttgagtctagagatgatgaattaattttc
aacatcacctccccgctgtcctttgaggagggctacatagtgagcacggatgataggaat
ttaccaatcacctctttttaccagggggacctcaaagacttgaaaattgcctacaaaccc
cctgctgtggattcagacactgagcggattttccagattgagtttgaggttgtggacacg
gagggggccgtgtcagaccccttcgctttcatgattgttgttaagcccatgaacacgttg
gcccccgtggtgacgaggaacgccggccagttactgtatgagggtcagtccaggcctctg
tccagctcgcacaatctggaaatcagcgacgaggacaatttagacaaagtccaaatcact
gtcattgacgggctgaggcgcggagaattaactgttctgggctcgaggaggaaattcttc
accccgagtgacctggacgctggagtagtgatttatcaacatgacggcagtgacacgtac
agcgataacatcatcttcagaatgacagacggcacaaatgaggtggagtttctgtttccc
atcactgtggtgccgacggatgacgagcctcccatcatcaacgccaacactggtttggtt
ttgttcaaaaaccaaatgatgccggtctcctcgctcatgctcagtgcagcagacattgac
tcggaggattctacaataaaattcatcaccgagcctcccttctccacgatcgggcaggtg
ctgctgcgccaggccgaggcccccgaggacccatcaacctggaagtttaatacagatgat
gaaatgtacgagaaagtagtgagcgagtggctgcagcaggatatcatcgatggtaaattg
ttttacaagcatgtcgggccccacagcaccagcacggtgatggatcagtttgtgtttcgg
gttcaggatgacaacgacccgccgaaccaatcaggtgagagcgcgttcattatcaaaatc
ctccctgtcgacgacctcccacccgagctgtaccctggcacgactctgcaaatcaccgtg
cacgagtatcagctcactcacttccggagaaagttcctccgttactctgacctggactca
gaggaccgggacctcaagtacatgatcatccagccgccgacggacacagacgagaacaac
cccgttgtcctggggactctggtattaactgaaagtccaaacactgtggtcacaactttc
actcaagcgcaaattaaccaccacaaaatagctttcaaaccacctgaccttgagctggga
attaccactcatgttttgcagttcaagtacgccgtggaggatgtttctggaaatagcgta
gagggagttttcaccatatttttacagcctgtggacaacacgccgcctcaaataaccaac
tctggcttcactgtgctcgaacgcggcacacacatcatcacgagcgctgagctggacacc
tcggacacagacaccgacagcagtcagataatattcaccgttacacagccaccgctgcac
ggacaaatccaatttacattcaccgacatgacaaaaggaaacactttcaacctggaggat
attggaaatggcagaatcacgtacatccataacggggatgaatcaacagttgatttgatc
caaatagatgtaagtgatagggtccacgttgtcccaattagtataaaaattagcgtgaag
ccaattgatgatgagattccaactatcagtctcccggccggcacaatcggctcctacata
gatgtgctggaaaacggagccacagaaatcaccagtaatgtcattcagggaagagacgag
gacacggatgaccttcgtttgaccttcatcgttgaggacccgccgttgttcggtgaaatc
ctggtgagaggcgtcccgtctcgcacgttcacccaggctgatattattaacggccacgtg
gtctatgctcataccagcggggagataggcttcaccacaaaggaggactttttcaacctc
actctgacggacatgtctgacgagtggaccgttggaggaaataagatcacaggtgtccga
gtgcacgttactattcttcccttggacagccaggctccagagctcttcgtggggccacag
ttcaccgttgtcgagggggagaagaatgtcattcatattctccacataagcgctgacgat
gtcgacacccccaacgacgacctcctttgtacaatcattgtacagccgacatcagggtac
gtggaaaacatctccccggcccccggctcagagaaatccaggtctgggacagccattagt
gctttcaccatcaaggacatcagactgaatcacatttattatgttcaaagcattcacaaa
ggagtggagccggtagaggacaggtttacgttcagatgctctgatggcatcaatttctct
gaaaggcactttttcccaatctctataatcccctctaatgatgaaaagcctgagatttac
atgagagagtttgtagtcatggagggcatgaatatagtcattgacactcccattctgaat
ggtgctgatgcagatctccccactgatcagctcacatttattatcagcaaacccccgaag
cacggatttattctcaatcagcgcaccacgggcaccgtccccgtctttaacttcaccttg
gatcagatcagggaggcctccagcattgtgtacgagcacgacgactcagaaaccacagaa
gacagctttgatattgttctcatagatggaaagttcagtgtcgagaaaaccgtcatagtt
atgatcatccccgtggacgacgaaaccccgaggatggcgatcaatgacgggcttgaaatt
gaaataggtgacgtgaaagtcatagacggcaacgttttaaaagcgacagatctggactct
gaggatagcacgctaacttatattattcgctatgggcccggtcaggggtatttgcagtgg
acggcgccctcggggatgttgcaaaatatcacagtcggaatgaactttacacagaacgaa
gtggatctgggtttgatcgtgtacatccataatgggcaggaggggattcgagacctcatc
aaattcgatgtgacagatggcatcaaccctttgattgacagatatttttatgtgactgtg
ggcggcatcgacatggttttcccagacgtggtcagtaaaggtgtttcccttaaagagggc
ggcagggttactctgacaacagacctcctcagcacaagcgacctcaacagcccagatgaa
cacttggtcttcacaatcacccgagctccaatgagaggccacttggagtgcacggacacg
cccgggatgcccatctcatccttcacgcagctgcagctggccggcaacaaagtctactac
ctgcacacctctgatgacgaagtgaaaatggacagctttgaatttgaagtgaccgatggc
tacaaccccgtgttccgcactttccgcgtctccatcaccgacgtggacaacaaaaagccg
gtggtgacggtgcacggcctggtggtgactgagggcgagaacaagctcatcacgcctttt
gagctaacggtggaggacagagacaccattgaccgcctcttgaagttcacagtcactcag
atcccagttcatggtcgcctgctctttaacaacaccaggcctgtcagctccttcacaaag
caggacctgaatgagaacatgatcagctacaagcacgatggcacggagagcgcagaggac
agcttctccttcaccgtcaccgatggcactcacacggacttctttgtcttccccgacact
gtgttcgagacccgaaggccccaagtaatgaagattagcgtcctcccggtggataacggg
gtgccacagattgtggtgaacaggggcgccccaacgctgcgggtcctggagtcaggtcac
ctggggtttgtgatcaccagtaagaccctgaaagcagaggacagagacagtgttcagaac
tctgtgacctttaggataaccgtcgccccagaacacgggtacatgatcaacctcggcaaa
ggaaatgtcacaatcaccacgttcacgcaagctgaaattgacgagatgaacatctgctac
gttctgagggacggtgacaatccgacaaacgacaacttctacttctccattgaggacaac
ggaggcaacaaactgaaacaccagcagttccgtctgaactgggcgtggatctctttagag
aagcagagctacgtggtggatgaagaggtcaagttcctggaggtggtgctgcggcgtcga
ggctacctgggagaaacttcattcgttagtatcggcacaaaggatggcactgcagagaag
gacaaagacttccgggggaagtctcagaaacaggttcagttcaaccccggtcagaccacg
gccacctggagggtccgcatcctgtcggacagcgactatgaagtgtccgagacctttcag
atcctcctctcggagccggtgatggccgccctggagttcccagaggttgcgactgtggag
atcctggaccctgatgatgaatcaacggtgttcataccctcggctgtttacaacatcgag
gaggacatcggcgagctgctggtccccgtgcgcaggagcggggacgtcagtcaggagctc
atggtcatctgctacactcagcaagtctcggccacgggcaccgtccccaccatggtgctc
tcctactccgactacatctccaggcctgaggaccaccacggcatcctgcgtttcgacaaa
ggcgaggtggagaaatcctgccgggtggtgatcatcgacgactccctgtatgaagaggag
gagagcttcatcgtcagcctcagcatgcccatgggaggacgggtgggctcggagtttccc
gaagccacaattacaatcatccccgatgcagacgacgctcccgtcttctactttggcaac
acggactaccacgtggacgagagcgacggcttcgtggaggtgcaggtgtggaggacgggg
accgatctgtccaaagcgggcaccgtcaccgtgcgctccagaaagacggagcccgtctcg
gctgaggccggtgtagattatgtggggatcagccggaatctggacttcgcaccgggggtc
aacatgcagactttccgcgtgaccatcctggatgacctgggccagccggtgctcgagggg
ccggagaggtttgaactgattctacggatgccgatgagcggcgtcctcggggagccgagc
aaatccaccatcctcgtcaatgattccgtctctgacctgccaaaggtgcagttccgtgat
gctgtgtacgtgggcaaagaggactcagggcggatctcagctaccgtgtaccgcagtggt
gacatcagctacagatccacagtgcgctgttacagcaggcagggcacagcccaggtcatg
atggacttcaatgagaggcccaacacagacgcttccgtcatcaccttcctaccaggagag
attgaaaagccttgtgttctgttgctcgtcgatgacacggagcacgaggaggaagaagaa
ctccgtctcgtgttgggaagccccaagagtgaatctccttttggagcgtctgtcggagga
cagaacgagacgctcatcaagattaaagacgacgcagacaagtcgatcattatgttcgga
gagaccaagttcagtgtgaatgagccgatggaaagtgggcaagtgtcggtggtgaagatc
ccagtgctgcgagtcggagacacatccaaggtctccgtggtccgagttcacaccaaggat
ggatccgccacctctggggaggactaccatcccatatctgaggaaatcgtgttcaaagag
ggcgacactgagcactatgtggaggtggaggttctatacgacggcgtccgagagatgagg
gaggcgttcaccgttcacctgaagccggatgagaacatggtggcggagacgaagatgagc
aaagcaataatctacattgaggagatcaacagcatggcggatgtcaccttcccctcggtg
cccagggtggtttctctgctgcagtacgatgacatcgacaggagcagggactctctgcct
ctggctggatacccggtcatttgtgtcacggcctgtaatcccaaatacccagactacgac
aaaacaggctccatctgtgtgagcgagaacatcaacaacaccctgactcgctatcgctgg
ctcgtgagcgcccccaccggccccgacggcgtaaccagcccgatgcgggaagttgacttt
gacacgttcttcacctcctctaagctcatcactttggactcggtctacttccaggccggt
tccagggtccagtgcgctgccagggctgtgaactcgaacggggatgaaggcctggaactc
cccagccacgtagtgtccatcagcccggacgagggaatgtgtcagcctcgtgttgtgggc
acagtgggggccgagcccttctctgccaagctgcggtacaccggaggcgaagacacggac
catcccaaccttatcaaagtaactgtcaccatgcctcacatcgacggtatgttgcccata
gtgtccacccgggccctctctaacttcgagctcaccctgagccctgacggaacccgtgtc
ggccaccaccgctgctctaacttgctggacttcaccgaggtcaagacccgccatggcttc
ctcaccgacgccaccaagaatccagaagtcatcggcgagacggcaccttaccagttcagc
agctccctcaggggatccagcacgctgcggttctacagaaacctcaacttggaggcctgt
ttgtgggagttcaccagctactacgacatgtccgagctgctcagcgactgcggaggcacc
attgggactgatggacaggtgctgaatctggtccagtcctacgtgaccttacgagtcccg
ctccatgtgtcctacgtcttccactcgcccgtgggagcaggtggatggcagcacttcgac
ttgcagtcagagctgaggctcacgttcgtgtatgacactgccatcttgtggagggatggt
atcggtagcccaccagaggctgaactacaaggtgccctctacccaaccagcatgcgtata
aatggccacggacgactggtggtcaacttccgcactgaggctcggttcagaggccttttt
gtgtttgcacatccagcttcaccactcacctccatggtcatgtgcccggagcacgctggt
ttgacctttaacatcagcctcgtgaggaacgagccgacctacaaccagcccatccagcag
tggaccttcatctccgattttgccgtgcgtgactactccggcacgtacacagtgaagctg
gttccctgtacatcccctcccaacctggagtacaccatccctcctgtgtgcaaccccaga
gagcctctgaccttcgacctggacattcgctttcagcaggtgagcgaccccgtggccgct
gagttcagtctgaacacgcagatgatcctaatctccaaacgctcgctgtggctctccgac
ggctccatgggcttcggacaggagagcgacacggccttctcgcagggagatacggtttac
agccgagtgatggtggatccggtgcagaacttgggcgactccttcatttgtaacatagaa
aaagttttcctctgcaccggagctgatggatacgtcccgaaatacaaccccagcaacttt
gagtttggctgtctggccgacgctccgtcgattctctacagattcaagatcattgacaag
gcccaaccggagacccaggctcggtcatttggcagcgtggctttcaacgccttcctggcg
gtggacgaccccgacgctttggctctggtgaggcaacctgggtccgacggtttcaaaatg
gattcctcagctctcttccaggtgtctgcaggaagagagtggtacattcacaccatctac
accgttcgttcccgggacaacgctaaccgtggcatagggaagaggagtctggagtaccat
gtgatgagccagcacacagacctgcctccaaagggtcaaggacgcgtcaggaggtcggcc
aacgacgtgccggacgtaatcgaggagatcggcgtgagcaacaaccggggcaccaacatc
ctgcacatcgcgctggaccctggcgcccagcggaggacgagcccggagagggagatcttc
accaaagggatcatactcggcgaggccaaccacagagacgacggtgacgacggactcgtg
ttgatcatcggcgtcttcgtggggctgctcctcacggttctcatcgtcatcgtggtggtg
ctgctcgtccggtccaagcgagggaagaagaaagacgtccccaagacctccagcagcgcc
gagcccatgatgacgcaaggcctcggtggcagcgacagctccgaggtttaa
DBGET
integrated database retrieval system
